Wall clock time and date at job start Tue Mar 31 2020 06:13:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47167 * 2 1 4 4 C 1.53003 * 109.47357 * 180.02562 * 3 2 1 5 5 H 1.09004 * 109.46636 * 305.00313 * 4 3 2 6 6 C 1.52999 * 109.46815 * 64.99920 * 4 3 2 7 7 C 1.52998 * 109.47386 * 57.26751 * 6 4 3 8 8 C 1.50694 * 109.47105 * 185.00226 * 4 3 2 9 9 O 1.21280 * 120.00010 * 335.59820 * 8 4 3 10 10 N 1.34778 * 119.99910 * 155.60137 * 8 4 3 11 11 C 1.46493 * 120.00184 * 175.66995 * 10 8 4 12 12 C 1.53001 * 109.47579 * 179.97438 * 11 10 8 13 13 C 1.53783 * 113.61326 * 274.13853 * 12 11 10 14 14 C 1.53960 * 87.01528 * 220.04126 * 13 12 11 15 15 N 1.46495 * 113.53982 * 270.80778 * 14 13 12 16 16 C 1.36932 * 120.00451 * 252.49723 * 15 14 13 17 17 H 1.08007 * 119.99956 * 0.02562 * 16 15 14 18 18 C 1.38806 * 120.00501 * 180.02562 * 16 15 14 19 19 N 1.31616 * 119.99828 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00345 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47211 * 89.99509 * 20 18 16 22 22 H 1.48501 * 109.47287 * 210.00046 * 20 18 16 23 23 H 1.48501 * 109.47011 * 329.99444 * 20 18 16 24 24 C 1.53775 * 113.61697 * 176.52715 * 12 11 10 25 25 H 1.08991 * 109.47366 * 59.99771 * 1 2 3 26 26 H 1.09004 * 109.46752 * 179.97438 * 1 2 3 27 27 H 1.09006 * 109.46846 * 299.99355 * 1 2 3 28 28 H 1.09001 * 109.46816 * 240.00168 * 2 1 3 29 29 H 1.09004 * 109.47512 * 120.00389 * 2 1 3 30 30 H 1.09001 * 109.47115 * 60.00352 * 3 2 1 31 31 H 1.09004 * 109.47223 * 300.00567 * 3 2 1 32 32 H 1.09004 * 109.47487 * 297.26287 * 6 4 3 33 33 H 1.09003 * 109.46880 * 177.26590 * 6 4 3 34 34 H 1.09000 * 109.47073 * 53.58148 * 7 6 4 35 35 H 1.08997 * 109.46974 * 293.58671 * 7 6 4 36 36 H 1.09001 * 109.47435 * 173.58583 * 7 6 4 37 37 H 0.96999 * 119.99763 * 355.66573 * 10 8 4 38 38 H 1.09003 * 109.47103 * 299.99492 * 11 10 8 39 39 H 1.09004 * 109.47418 * 59.99527 * 11 10 8 40 40 H 1.09003 * 112.84818 * 45.33223 * 12 11 10 41 41 H 1.09000 * 113.61196 * 334.55963 * 13 12 11 42 42 H 1.09003 * 113.61411 * 105.46670 * 13 12 11 43 43 H 1.09004 * 113.73724 * 139.93891 * 14 13 12 44 44 H 0.97000 * 119.99659 * 72.49475 * 15 14 13 45 45 H 0.97002 * 120.00035 * 180.02562 * 19 18 16 46 46 H 1.09006 * 113.61500 * 254.52894 * 24 12 11 47 47 H 1.08994 * 113.61966 * 25.43444 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 1 3.9337 0.8529 0.8409 6 6 4.0794 0.8331 -1.3083 7 6 3.5135 1.6198 -2.4922 8 6 4.0724 2.8579 0.1232 9 8 3.3725 3.7829 -0.2309 10 7 5.2994 3.0957 0.6276 11 6 5.8255 4.4625 0.6604 12 6 7.2257 4.4554 1.2771 13 6 7.2230 4.5370 2.8127 14 6 8.4278 5.4869 2.6842 15 7 9.7193 4.7956 2.6738 16 6 10.5445 4.8697 3.7641 17 1 10.2429 5.4376 4.6319 18 6 11.7685 4.2152 3.7540 19 7 12.1358 3.5228 2.6967 20 14 12.8938 4.3157 5.2416 21 1 12.5854 3.2001 6.1719 22 1 14.3081 4.2156 4.8002 23 1 12.6824 5.6116 5.9354 24 6 7.9042 5.8354 1.2809 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8901 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6766 1.9564 -0.8900 32 1 3.7567 -0.2060 -1.3750 33 1 5.1684 0.8774 -1.3298 34 1 3.7398 2.6786 -2.3662 35 1 2.4332 1.4820 -2.5369 36 1 3.9644 1.2594 -3.4168 37 1 5.8340 2.3619 0.9689 38 1 5.8772 4.8564 -0.3546 39 1 5.1676 5.0909 1.2609 40 1 7.8576 3.6593 0.8832 41 1 6.3328 5.0139 3.2230 42 1 7.4611 3.5918 3.3006 43 1 8.4019 6.3251 3.3805 44 1 9.9900 4.2853 1.8945 45 1 12.9910 3.0650 2.6898 46 1 8.6916 5.9370 0.5339 47 1 7.2007 6.6679 1.2716 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001100797807.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:15 Heat of formation + Delta-G solvation = -40.702558 kcal Electronic energy + Delta-G solvation = -22275.150842 eV Core-core repulsion = 19071.551731 eV Total energy + Delta-G solvation = -3203.599110 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.18416 -38.64029 -36.56425 -34.59679 -33.28271 -32.99465 -30.24158 -29.18163 -27.41979 -25.15613 -25.03140 -23.72982 -23.01040 -21.73407 -20.99655 -19.51115 -18.33131 -17.35584 -16.79559 -16.29597 -15.84696 -15.56667 -14.91275 -14.41266 -14.28693 -14.13924 -13.85149 -13.68215 -13.37905 -12.95517 -12.89693 -12.81556 -12.29948 -12.19770 -12.04030 -11.92783 -11.50085 -11.40434 -11.23714 -11.16135 -11.05353 -10.85371 -10.83118 -10.64024 -10.48968 -10.19758 -10.03734 -9.71021 -9.65795 -9.40349 -8.95568 -8.88625 -7.02149 -5.82891 -3.11892 2.67413 3.23835 3.40298 3.45780 3.47325 4.47646 4.50867 4.53958 4.65751 4.88109 4.91551 4.99383 5.05589 5.06663 5.15829 5.23907 5.34549 5.41833 5.43634 5.46313 5.55312 5.62601 5.63541 5.68763 5.71740 5.78710 5.85908 5.86889 5.93929 5.95661 6.03726 6.07038 6.11947 6.20806 6.25392 6.36248 6.46940 6.59254 6.73236 6.89644 7.03146 7.57141 7.67053 8.27295 8.36389 9.47044 10.04615 10.38865 11.39590 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.026449 B = 0.002741 C = 0.002674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1058.389146 B =10212.604307 C =10469.220563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.126 4.126 3 C -0.103 4.103 4 C -0.109 4.109 5 H 0.089 0.911 6 C -0.112 4.112 7 C -0.158 4.158 8 C 0.516 3.484 9 O -0.545 6.545 10 N -0.725 5.725 11 C 0.131 3.869 12 C -0.119 4.119 13 C -0.168 4.168 14 C 0.167 3.833 15 N -0.706 5.706 16 C -0.242 4.242 17 H 0.072 0.928 18 C -0.013 4.013 19 N -0.933 5.933 20 Si 0.909 3.091 21 H -0.289 1.289 22 H -0.291 1.291 23 H -0.281 1.281 24 C -0.148 4.148 25 H 0.054 0.946 26 H 0.052 0.948 27 H 0.053 0.947 28 H 0.064 0.936 29 H 0.061 0.939 30 H 0.063 0.937 31 H 0.077 0.923 32 H 0.075 0.925 33 H 0.067 0.933 34 H 0.061 0.939 35 H 0.058 0.942 36 H 0.053 0.947 37 H 0.402 0.598 38 H 0.061 0.939 39 H 0.065 0.935 40 H 0.092 0.908 41 H 0.067 0.933 42 H 0.066 0.934 43 H 0.062 0.938 44 H 0.385 0.615 45 H 0.256 0.744 46 H 0.068 0.932 47 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.614 -6.336 -7.481 21.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.163 4.163 3 C -0.141 4.141 4 C -0.130 4.130 5 H 0.108 0.892 6 C -0.150 4.150 7 C -0.215 4.215 8 C 0.302 3.698 9 O -0.423 6.423 10 N -0.376 5.376 11 C 0.007 3.993 12 C -0.138 4.138 13 C -0.209 4.209 14 C 0.055 3.945 15 N -0.344 5.344 16 C -0.373 4.373 17 H 0.090 0.910 18 C -0.209 4.209 19 N -0.581 5.581 20 Si 0.740 3.260 21 H -0.217 1.217 22 H -0.217 1.217 23 H -0.207 1.207 24 C -0.188 4.188 25 H 0.073 0.927 26 H 0.072 0.928 27 H 0.073 0.927 28 H 0.083 0.917 29 H 0.080 0.920 30 H 0.082 0.918 31 H 0.096 0.904 32 H 0.093 0.907 33 H 0.085 0.915 34 H 0.080 0.920 35 H 0.077 0.923 36 H 0.072 0.928 37 H 0.236 0.764 38 H 0.079 0.921 39 H 0.083 0.917 40 H 0.110 0.890 41 H 0.085 0.915 42 H 0.085 0.915 43 H 0.080 0.920 44 H 0.219 0.781 45 H 0.066 0.934 46 H 0.087 0.913 47 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -19.964 -5.609 -7.581 22.079 hybrid contribution 1.065 -0.597 0.723 1.419 sum -18.899 -6.206 -6.857 21.041 Atomic orbital electron populations 1.21761 0.95838 1.01438 1.01926 1.21590 0.95922 0.96703 1.02112 1.21496 0.92349 0.96766 1.03514 1.21396 0.97836 0.93662 1.00144 0.89232 1.21471 1.00748 0.99797 0.93010 1.21876 1.01219 1.01077 0.97337 1.20616 0.81216 0.91243 0.76704 1.90671 1.56236 1.46016 1.49372 1.46134 1.17635 1.10732 1.63071 1.21452 0.94475 0.82620 1.00710 1.22701 0.94058 0.99600 0.97438 1.23909 1.00637 1.02420 0.93959 1.21093 0.85893 0.93622 0.93892 1.42169 1.14928 1.58965 1.18362 1.19292 0.97365 1.26185 0.94460 0.90995 1.24763 0.98071 1.00319 0.97759 1.69659 1.22607 1.37179 1.28661 0.86165 0.80184 0.77673 0.82025 1.21681 1.21746 1.20688 1.23437 0.99549 0.95241 1.00541 0.92732 0.92848 0.92748 0.91687 0.92030 0.91777 0.90448 0.90681 0.91465 0.92007 0.92250 0.92802 0.76422 0.92067 0.91687 0.88961 0.91456 0.91540 0.91976 0.78126 0.93436 0.91345 0.90495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 9.91 37.16 0.37 -0.67 16 2 C -0.13 -0.91 5.69 -26.73 -0.15 -1.06 16 3 C -0.10 -0.95 3.85 -26.73 -0.10 -1.06 16 4 C -0.11 -1.03 2.50 -91.77 -0.23 -1.25 16 5 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 6 C -0.11 -0.95 5.39 -26.73 -0.14 -1.09 16 7 C -0.16 -1.47 9.17 37.16 0.34 -1.13 16 8 C 0.52 6.56 6.03 -10.99 -0.07 6.49 16 9 O -0.55 -8.81 15.45 5.56 0.09 -8.72 16 10 N -0.72 -8.82 5.55 -60.30 -0.33 -9.16 16 11 C 0.13 1.77 5.50 -4.04 -0.02 1.74 16 12 C -0.12 -1.77 3.62 -89.81 -0.33 -2.10 16 13 C -0.17 -2.78 7.44 -25.82 -0.19 -2.98 16 14 C 0.17 3.24 4.57 -67.03 -0.31 2.94 16 15 N -0.71 -17.26 5.31 -52.55 -0.28 -17.54 16 16 C -0.24 -6.61 9.97 -15.06 -0.15 -6.76 16 17 H 0.07 1.91 7.83 -52.48 -0.41 1.50 16 18 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 19 N -0.93 -27.67 13.06 55.49 0.72 -26.95 16 20 Si 0.91 22.07 29.55 -169.99 -5.02 17.05 16 21 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 22 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 23 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 24 C -0.15 -2.37 7.39 -25.92 -0.19 -2.56 16 25 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 27 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 28 H 0.06 0.43 6.62 -51.93 -0.34 0.09 16 29 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.08 0.80 6.14 -51.93 -0.32 0.48 16 32 H 0.07 0.52 6.70 -51.93 -0.35 0.17 16 33 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.06 0.72 6.58 -51.93 -0.34 0.38 16 35 H 0.06 0.52 6.64 -51.93 -0.34 0.17 16 36 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.40 4.26 8.48 -40.82 -0.35 3.91 16 38 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.06 0.93 7.87 -51.93 -0.41 0.52 16 40 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16 41 H 0.07 1.01 7.92 -51.93 -0.41 0.60 16 42 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 43 H 0.06 1.22 8.10 -51.93 -0.42 0.80 16 44 H 0.38 9.94 7.90 -40.82 -0.32 9.62 16 45 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 46 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 47 H 0.08 1.08 8.10 -51.93 -0.42 0.66 16 LS Contribution 371.67 15.07 5.60 5.60 Total: -1.00 -30.73 371.67 -9.14 -39.87 By element: Atomic # 1 Polarization: 18.45 SS G_CDS: -8.65 Total: 9.80 kcal Atomic # 6 Polarization: -8.68 SS G_CDS: -1.27 Total: -9.95 kcal Atomic # 7 Polarization: -53.76 SS G_CDS: 0.11 Total: -53.65 kcal Atomic # 8 Polarization: -8.81 SS G_CDS: 0.09 Total: -8.72 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -30.73 -9.14 -39.87 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100797807.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.835 kcal (2) G-P(sol) polarization free energy of solvation -30.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds