Wall clock time and date at job start Tue Mar 31 2020 06:17:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52997 * 109.47408 * 2 1 4 4 C 1.53002 * 109.47469 * 179.97438 * 3 2 1 5 5 H 1.09003 * 109.47119 * 305.00001 * 4 3 2 6 6 C 1.53001 * 109.47008 * 64.99718 * 4 3 2 7 7 C 1.50702 * 109.47209 * 185.00027 * 4 3 2 8 8 O 1.21284 * 120.00047 * 359.97438 * 7 4 3 9 9 N 1.34780 * 119.99828 * 179.97438 * 7 4 3 10 10 C 1.46495 * 119.99841 * 179.97438 * 9 7 4 11 11 C 1.53002 * 109.47221 * 180.02562 * 10 9 7 12 12 H 1.09004 * 110.63905 * 54.29711 * 11 10 9 13 13 C 1.54329 * 110.71787 * 291.16004 * 11 10 9 14 14 N 1.47020 * 107.26924 * 219.26194 * 13 11 10 15 15 C 1.36937 * 125.65219 * 178.97289 * 14 13 11 16 16 H 1.08000 * 119.99546 * 349.94432 * 15 14 13 17 17 C 1.38805 * 120.00312 * 169.94530 * 15 14 13 18 18 N 1.31623 * 120.00222 * 350.42037 * 17 15 14 19 19 Si 1.86802 * 119.99998 * 170.42811 * 17 15 14 20 20 H 1.48500 * 109.47491 * 94.13811 * 19 17 15 21 21 H 1.48500 * 109.47155 * 214.13811 * 19 17 15 22 22 H 1.48500 * 109.46835 * 334.13569 * 19 17 15 23 23 C 1.47433 * 108.70315 * 358.94458 * 14 13 11 24 24 C 1.55150 * 110.72444 * 177.44193 * 11 10 9 25 25 H 1.09005 * 111.00480 * 35.96282 * 24 11 10 26 26 C 1.53002 * 111.00505 * 272.11670 * 24 11 10 27 27 H 1.09001 * 109.47183 * 59.99779 * 1 2 3 28 28 H 1.08994 * 109.47549 * 179.97438 * 1 2 3 29 29 H 1.09006 * 109.47152 * 300.00488 * 1 2 3 30 30 H 1.08996 * 109.47642 * 239.99660 * 2 1 3 31 31 H 1.09001 * 109.46968 * 119.99712 * 2 1 3 32 32 H 1.09006 * 109.47362 * 59.99641 * 3 2 1 33 33 H 1.09001 * 109.47129 * 300.00254 * 3 2 1 34 34 H 1.09004 * 109.47053 * 300.00290 * 6 4 3 35 35 H 1.09003 * 109.46950 * 60.00179 * 6 4 3 36 36 H 1.09004 * 109.47074 * 180.02562 * 6 4 3 37 37 H 0.97004 * 119.99794 * 359.97438 * 9 7 4 38 38 H 1.08998 * 109.47251 * 60.00232 * 10 9 7 39 39 H 1.08997 * 109.47516 * 299.99927 * 10 9 7 40 40 H 1.08996 * 109.88367 * 338.68230 * 13 11 10 41 41 H 1.08999 * 109.88545 * 99.84943 * 13 11 10 42 42 H 0.96994 * 120.00385 * 180.02562 * 18 17 15 43 43 H 1.08992 * 110.36487 * 142.96691 * 23 14 13 44 44 H 1.09003 * 110.35857 * 265.28715 * 23 14 13 45 45 H 1.09006 * 109.46942 * 60.00022 * 26 24 11 46 46 H 1.08998 * 109.47086 * 179.97438 * 26 24 11 47 47 H 1.08993 * 109.47327 * 299.99752 * 26 24 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9330 0.8531 0.8427 6 6 4.0805 0.8326 -1.3064 7 6 4.0723 2.8579 0.1245 8 8 3.2841 3.7763 0.2039 9 7 5.3974 3.1032 0.1470 10 6 5.8857 4.4791 0.2668 11 6 7.4157 4.4791 0.2676 12 1 7.8004 3.9578 -0.6090 13 6 7.9610 3.8435 1.5639 14 7 9.1319 4.6308 1.9770 15 6 9.8920 4.4050 3.0934 16 1 9.5586 3.6993 3.8399 17 6 11.0908 5.0831 3.2657 18 7 11.5911 5.7966 2.2792 19 14 11.9943 4.9831 4.8977 20 1 13.0052 3.8969 4.8381 21 1 12.6725 6.2762 5.1681 22 1 11.0234 4.6967 5.9842 23 6 9.3527 5.7033 0.9897 24 6 7.9647 5.9290 0.3288 25 1 7.3323 6.5602 0.9532 26 6 8.1101 6.5201 -1.0749 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8900 30 1 1.8933 -0.5138 -0.8899 31 1 1.8932 -0.5138 0.8900 32 1 1.6766 1.9564 0.8900 33 1 1.6766 1.9563 -0.8900 34 1 3.7172 -0.1912 -1.3959 35 1 3.7175 1.4219 -2.1485 36 1 5.1706 0.8322 -1.3057 37 1 6.0277 2.3685 0.0838 38 1 5.5216 4.9141 1.1975 39 1 5.5232 5.0680 -0.5757 40 1 7.1987 3.8766 2.3421 41 1 8.2563 2.8114 1.3749 42 1 12.4290 6.2701 2.3995 43 1 9.6882 6.6133 1.4869 44 1 10.0812 5.3872 0.2430 45 1 7.1367 6.5354 -1.5653 46 1 8.4962 7.5368 -1.0027 47 1 8.8005 5.9094 -1.6566 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001101828587.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:32 Heat of formation + Delta-G solvation = -49.471079 kcal Electronic energy + Delta-G solvation = -22672.756826 eV Core-core repulsion = 19468.777484 eV Total energy + Delta-G solvation = -3203.979342 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.96567 -38.07709 -36.13274 -34.62448 -33.00877 -32.14398 -30.74784 -29.19827 -26.83606 -26.04672 -25.29724 -23.95681 -22.60769 -21.21341 -20.08517 -19.85622 -19.14455 -17.07546 -16.64473 -16.07480 -15.72166 -15.31688 -14.77212 -14.37492 -14.16621 -14.00325 -13.70469 -13.46847 -13.07078 -12.81804 -12.66478 -12.56030 -12.47101 -12.09167 -11.86934 -11.58269 -11.54161 -11.41332 -11.18650 -11.14828 -11.02204 -10.82641 -10.78942 -10.72747 -10.23353 -10.03052 -9.95343 -9.87595 -9.66327 -9.43029 -8.90437 -8.58755 -6.80538 -5.75612 -3.08058 2.72405 3.27620 3.38686 3.44731 3.46856 4.48237 4.53092 4.57483 4.69322 4.94057 5.01356 5.07582 5.11758 5.24540 5.28258 5.33194 5.43655 5.46351 5.56403 5.58002 5.60508 5.65922 5.74334 5.76450 5.84894 5.87358 5.92964 6.05799 6.10203 6.13502 6.18399 6.19575 6.26108 6.46293 6.52256 6.58440 6.62594 6.77058 6.94567 7.51154 7.58983 7.60787 7.78094 8.25541 8.31304 9.18858 9.80793 10.48578 11.37463 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.023864 B = 0.003224 C = 0.002968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1173.024783 B = 8682.793872 C = 9432.895612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.126 4.126 3 C -0.100 4.100 4 C -0.113 4.113 5 H 0.097 0.903 6 C -0.145 4.145 7 C 0.514 3.486 8 O -0.546 6.546 9 N -0.725 5.725 10 C 0.132 3.868 11 C -0.109 4.109 12 H 0.077 0.923 13 C 0.141 3.859 14 N -0.604 5.604 15 C -0.229 4.229 16 H 0.075 0.925 17 C -0.007 4.007 18 N -0.918 5.918 19 Si 0.910 3.090 20 H -0.289 1.289 21 H -0.290 1.290 22 H -0.281 1.281 23 C 0.181 3.819 24 C -0.113 4.113 25 H 0.071 0.929 26 C -0.134 4.134 27 H 0.053 0.947 28 H 0.052 0.948 29 H 0.054 0.946 30 H 0.064 0.936 31 H 0.061 0.939 32 H 0.070 0.930 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.060 0.940 36 H 0.060 0.940 37 H 0.401 0.599 38 H 0.067 0.933 39 H 0.064 0.936 40 H 0.024 0.976 41 H 0.018 0.982 42 H 0.253 0.747 43 H 0.068 0.932 44 H 0.028 0.972 45 H 0.045 0.955 46 H 0.054 0.946 47 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.878 -9.240 -8.309 20.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.164 4.164 3 C -0.138 4.138 4 C -0.134 4.134 5 H 0.115 0.885 6 C -0.203 4.203 7 C 0.300 3.700 8 O -0.424 6.424 9 N -0.376 5.376 10 C 0.009 3.991 11 C -0.128 4.128 12 H 0.095 0.905 13 C 0.015 3.985 14 N -0.330 5.330 15 C -0.358 4.358 16 H 0.093 0.907 17 C -0.204 4.204 18 N -0.565 5.565 19 Si 0.740 3.260 20 H -0.216 1.216 21 H -0.216 1.216 22 H -0.206 1.206 23 C 0.056 3.944 24 C -0.134 4.134 25 H 0.089 0.911 26 C -0.192 4.192 27 H 0.073 0.927 28 H 0.071 0.929 29 H 0.073 0.927 30 H 0.082 0.918 31 H 0.080 0.920 32 H 0.089 0.911 33 H 0.086 0.914 34 H 0.087 0.913 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.235 0.765 38 H 0.086 0.914 39 H 0.082 0.918 40 H 0.042 0.958 41 H 0.036 0.964 42 H 0.063 0.937 43 H 0.086 0.914 44 H 0.046 0.954 45 H 0.064 0.936 46 H 0.073 0.927 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -16.232 -8.489 -8.149 20.049 hybrid contribution 0.985 -0.422 0.841 1.362 sum -15.247 -8.912 -7.308 19.113 Atomic orbital electron populations 1.21760 0.95843 1.01399 1.01975 1.21605 0.95958 0.96758 1.02061 1.21422 0.92346 0.96506 1.03516 1.21353 0.97803 0.93704 1.00547 0.88527 1.21830 1.01273 1.01272 0.95893 1.20651 0.82287 0.91242 0.75851 1.90684 1.55406 1.46524 1.49770 1.46114 1.06954 1.10067 1.74430 1.21429 0.93725 0.82168 1.01823 1.22472 0.92407 0.98609 0.99293 0.90492 1.21335 0.90470 0.94039 0.92623 1.44460 1.30757 1.31554 1.26199 1.19008 0.99569 1.21761 0.95427 0.90722 1.24818 0.96884 1.00722 0.97961 1.69952 1.20506 1.36052 1.29986 0.86138 0.79570 0.77038 0.83221 1.21628 1.21595 1.20608 1.21531 0.89355 0.92979 0.90547 1.22669 1.00581 0.93602 0.96506 0.91076 1.21645 1.00497 1.00834 0.96221 0.92746 0.92882 0.92687 0.91767 0.91999 0.91126 0.91374 0.91286 0.92116 0.92054 0.76498 0.91425 0.91767 0.95850 0.96382 0.93704 0.91383 0.95423 0.93596 0.92723 0.92815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 9.91 37.15 0.37 -0.71 16 2 C -0.13 -0.94 5.69 -26.74 -0.15 -1.09 16 3 C -0.10 -0.96 4.03 -26.73 -0.11 -1.07 16 4 C -0.11 -1.08 2.72 -91.77 -0.25 -1.33 16 5 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 6 C -0.15 -1.12 8.84 37.16 0.33 -0.79 16 7 C 0.51 6.87 7.15 -10.98 -0.08 6.80 16 8 O -0.55 -9.42 15.92 5.55 0.09 -9.33 16 9 N -0.72 -9.28 5.32 -60.30 -0.32 -9.60 16 10 C 0.13 1.96 5.00 -4.04 -0.02 1.94 16 11 C -0.11 -1.79 2.44 -88.79 -0.22 -2.01 16 12 H 0.08 1.20 8.04 -51.93 -0.42 0.78 16 13 C 0.14 2.86 6.64 -3.06 -0.02 2.84 16 14 N -0.60 -15.34 3.40 -169.77 -0.58 -15.91 16 15 C -0.23 -6.40 10.24 -15.06 -0.15 -6.55 16 16 H 0.07 2.03 7.85 -52.49 -0.41 1.61 16 17 C -0.01 -0.20 5.40 -17.43 -0.09 -0.30 16 18 N -0.92 -26.87 10.68 55.49 0.59 -26.28 16 19 Si 0.91 22.05 29.56 -169.99 -5.03 17.03 16 20 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 21 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 22 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 23 C 0.18 4.30 4.91 -2.27 -0.01 4.29 16 24 C -0.11 -2.06 3.11 -88.22 -0.27 -2.33 16 25 H 0.07 1.31 8.05 -51.93 -0.42 0.89 16 26 C -0.13 -2.04 9.32 37.16 0.35 -1.69 16 27 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 0.42 6.57 -51.93 -0.34 0.08 16 31 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.07 0.78 7.96 -51.93 -0.41 0.37 16 33 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.07 0.43 6.57 -51.93 -0.34 0.09 16 35 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.06 0.44 7.57 -51.93 -0.39 0.05 16 37 H 0.40 4.36 7.82 -40.82 -0.32 4.04 16 38 H 0.07 1.12 8.00 -51.93 -0.42 0.70 16 39 H 0.06 0.95 8.12 -51.93 -0.42 0.52 16 40 H 0.02 0.48 7.73 -51.93 -0.40 0.08 16 41 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 42 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 43 H 0.07 1.82 6.93 -51.93 -0.36 1.46 16 44 H 0.03 0.71 7.93 -51.93 -0.41 0.30 16 45 H 0.04 0.61 8.12 -51.93 -0.42 0.19 16 46 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 47 H 0.05 0.81 8.08 -51.93 -0.42 0.39 16 LS Contribution 368.55 15.07 5.55 5.55 Total: -1.00 -31.84 368.55 -8.87 -40.71 By element: Atomic # 1 Polarization: 8.69 SS G_CDS: -8.85 Total: -0.16 kcal Atomic # 6 Polarization: -1.68 SS G_CDS: -0.34 Total: -2.02 kcal Atomic # 7 Polarization: -51.49 SS G_CDS: -0.30 Total: -51.79 kcal Atomic # 8 Polarization: -9.42 SS G_CDS: 0.09 Total: -9.33 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.03 Total: 17.03 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -31.84 -8.87 -40.71 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001101828587.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.758 kcal (2) G-P(sol) polarization free energy of solvation -31.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds