Wall clock time and date at job start Tue Mar 31 2020 06:17:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52997 * 109.47408 * 2 1 4 4 C 1.53002 * 109.47469 * 179.97438 * 3 2 1 5 5 H 1.09003 * 109.47119 * 305.00001 * 4 3 2 6 6 C 1.53001 * 109.47008 * 64.99718 * 4 3 2 7 7 C 1.50702 * 109.47209 * 185.00027 * 4 3 2 8 8 O 1.21284 * 120.00047 * 359.97438 * 7 4 3 9 9 N 1.34780 * 119.99828 * 179.97438 * 7 4 3 10 10 C 1.46495 * 119.99841 * 179.97438 * 9 7 4 11 11 C 1.53002 * 109.47221 * 180.02562 * 10 9 7 12 12 H 1.09004 * 110.63905 * 54.29711 * 11 10 9 13 13 C 1.54329 * 110.71787 * 291.16004 * 11 10 9 14 14 N 1.47020 * 107.26924 * 219.26194 * 13 11 10 15 15 C 1.36937 * 125.65219 * 178.97289 * 14 13 11 16 16 H 1.08000 * 119.99546 * 349.94432 * 15 14 13 17 17 C 1.38805 * 120.00312 * 169.94530 * 15 14 13 18 18 N 1.31623 * 120.00222 * 350.42037 * 17 15 14 19 19 Si 1.86802 * 119.99998 * 170.42811 * 17 15 14 20 20 H 1.48500 * 109.47491 * 94.13811 * 19 17 15 21 21 H 1.48500 * 109.47155 * 214.13811 * 19 17 15 22 22 H 1.48500 * 109.46835 * 334.13569 * 19 17 15 23 23 C 1.47433 * 108.70315 * 358.94458 * 14 13 11 24 24 C 1.55150 * 110.72444 * 177.44193 * 11 10 9 25 25 H 1.09005 * 111.00480 * 35.96282 * 24 11 10 26 26 C 1.53002 * 111.00505 * 272.11670 * 24 11 10 27 27 H 1.09001 * 109.47183 * 59.99779 * 1 2 3 28 28 H 1.08994 * 109.47549 * 179.97438 * 1 2 3 29 29 H 1.09006 * 109.47152 * 300.00488 * 1 2 3 30 30 H 1.08996 * 109.47642 * 239.99660 * 2 1 3 31 31 H 1.09001 * 109.46968 * 119.99712 * 2 1 3 32 32 H 1.09006 * 109.47362 * 59.99641 * 3 2 1 33 33 H 1.09001 * 109.47129 * 300.00254 * 3 2 1 34 34 H 1.09004 * 109.47053 * 300.00290 * 6 4 3 35 35 H 1.09003 * 109.46950 * 60.00179 * 6 4 3 36 36 H 1.09004 * 109.47074 * 180.02562 * 6 4 3 37 37 H 0.97004 * 119.99794 * 359.97438 * 9 7 4 38 38 H 1.08998 * 109.47251 * 60.00232 * 10 9 7 39 39 H 1.08997 * 109.47516 * 299.99927 * 10 9 7 40 40 H 1.08996 * 109.88367 * 338.68230 * 13 11 10 41 41 H 1.08999 * 109.88545 * 99.84943 * 13 11 10 42 42 H 0.96994 * 120.00385 * 180.02562 * 18 17 15 43 43 H 1.08992 * 110.36487 * 142.96691 * 23 14 13 44 44 H 1.09003 * 110.35857 * 265.28715 * 23 14 13 45 45 H 1.09006 * 109.46942 * 60.00022 * 26 24 11 46 46 H 1.08998 * 109.47086 * 179.97438 * 26 24 11 47 47 H 1.08993 * 109.47327 * 299.99752 * 26 24 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9330 0.8531 0.8427 6 6 4.0805 0.8326 -1.3064 7 6 4.0723 2.8579 0.1245 8 8 3.2841 3.7763 0.2039 9 7 5.3974 3.1032 0.1470 10 6 5.8857 4.4791 0.2668 11 6 7.4157 4.4791 0.2676 12 1 7.8004 3.9578 -0.6090 13 6 7.9610 3.8435 1.5639 14 7 9.1319 4.6308 1.9770 15 6 9.8920 4.4050 3.0934 16 1 9.5586 3.6993 3.8399 17 6 11.0908 5.0831 3.2657 18 7 11.5911 5.7966 2.2792 19 14 11.9943 4.9831 4.8977 20 1 13.0052 3.8969 4.8381 21 1 12.6725 6.2762 5.1681 22 1 11.0234 4.6967 5.9842 23 6 9.3527 5.7033 0.9897 24 6 7.9647 5.9290 0.3288 25 1 7.3323 6.5602 0.9532 26 6 8.1101 6.5201 -1.0749 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8900 30 1 1.8933 -0.5138 -0.8899 31 1 1.8932 -0.5138 0.8900 32 1 1.6766 1.9564 0.8900 33 1 1.6766 1.9563 -0.8900 34 1 3.7172 -0.1912 -1.3959 35 1 3.7175 1.4219 -2.1485 36 1 5.1706 0.8322 -1.3057 37 1 6.0277 2.3685 0.0838 38 1 5.5216 4.9141 1.1975 39 1 5.5232 5.0680 -0.5757 40 1 7.1987 3.8766 2.3421 41 1 8.2563 2.8114 1.3749 42 1 12.4290 6.2701 2.3995 43 1 9.6882 6.6133 1.4869 44 1 10.0812 5.3872 0.2430 45 1 7.1367 6.5354 -1.5653 46 1 8.4962 7.5368 -1.0027 47 1 8.8005 5.9094 -1.6566 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001101828587.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:31 Heat of formation + Delta-G solvation = -68.741410 kcal Electronic energy + Delta-G solvation = -22673.592450 eV Core-core repulsion = 19468.777484 eV Total energy + Delta-G solvation = -3204.814966 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.05915 -39.62585 -36.94218 -36.01903 -34.69197 -32.91187 -32.55767 -30.63074 -27.87102 -27.47278 -26.77194 -25.12033 -23.97700 -22.13536 -21.50127 -21.19773 -20.41704 -18.83591 -17.93988 -17.24703 -16.79329 -16.62808 -16.23470 -15.70975 -15.58923 -14.98313 -14.87758 -14.68230 -14.42849 -14.07425 -13.89573 -13.49771 -13.46410 -13.35582 -13.11060 -13.08739 -12.77087 -12.71833 -12.63754 -12.46757 -12.11977 -11.97641 -11.86199 -11.82419 -11.70404 -11.63158 -11.41801 -11.38159 -11.32173 -10.72309 -10.60649 -10.05431 -8.85826 -7.89067 -5.23402 1.44876 1.46529 1.56035 1.68139 2.23802 2.48536 3.29495 3.60135 3.70180 3.80237 3.85446 3.89080 3.95524 4.00451 4.32611 4.37776 4.40265 4.43502 4.49363 4.61338 4.66256 4.72994 4.80653 4.84380 4.85506 4.93718 4.96608 4.99525 5.05732 5.07130 5.15110 5.15886 5.26205 5.32964 5.36053 5.40629 5.44523 5.46914 5.50263 5.54855 5.65942 5.77366 6.20296 6.58907 7.08060 7.28003 7.76376 8.42756 9.22794 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.023864 B = 0.003224 C = 0.002968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1173.024783 B = 8682.793872 C = 9432.895612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.121 4.121 3 C -0.098 4.098 4 C -0.106 4.106 5 H 0.114 0.886 6 C -0.142 4.142 7 C 0.510 3.490 8 O -0.589 6.589 9 N -0.717 5.717 10 C 0.144 3.856 11 C -0.088 4.088 12 H 0.095 0.905 13 C 0.138 3.862 14 N -0.628 5.628 15 C -0.245 4.245 16 H 0.077 0.923 17 C -0.063 4.063 18 N -0.947 5.947 19 Si 0.976 3.024 20 H -0.284 1.284 21 H -0.293 1.293 22 H -0.271 1.271 23 C 0.187 3.813 24 C -0.103 4.103 25 H 0.067 0.933 26 C -0.127 4.127 27 H 0.051 0.949 28 H 0.064 0.936 29 H 0.047 0.953 30 H 0.078 0.922 31 H 0.068 0.932 32 H 0.049 0.951 33 H 0.055 0.945 34 H 0.089 0.911 35 H 0.053 0.947 36 H 0.069 0.931 37 H 0.413 0.587 38 H 0.049 0.951 39 H 0.073 0.927 40 H 0.021 0.979 41 H 0.027 0.973 42 H 0.248 0.752 43 H 0.028 0.972 44 H 0.002 0.998 45 H 0.074 0.926 46 H 0.054 0.946 47 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.844 -11.057 -9.017 22.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.158 4.158 3 C -0.136 4.136 4 C -0.127 4.127 5 H 0.132 0.868 6 C -0.199 4.199 7 C 0.298 3.702 8 O -0.469 6.469 9 N -0.369 5.369 10 C 0.020 3.980 11 C -0.107 4.107 12 H 0.113 0.887 13 C 0.013 3.987 14 N -0.354 5.354 15 C -0.374 4.374 16 H 0.095 0.905 17 C -0.257 4.257 18 N -0.595 5.595 19 Si 0.804 3.196 20 H -0.211 1.211 21 H -0.220 1.220 22 H -0.196 1.196 23 C 0.062 3.938 24 C -0.123 4.123 25 H 0.086 0.914 26 C -0.185 4.185 27 H 0.071 0.929 28 H 0.084 0.916 29 H 0.066 0.934 30 H 0.097 0.903 31 H 0.087 0.913 32 H 0.067 0.933 33 H 0.074 0.926 34 H 0.108 0.892 35 H 0.072 0.928 36 H 0.088 0.912 37 H 0.249 0.751 38 H 0.067 0.933 39 H 0.091 0.909 40 H 0.039 0.961 41 H 0.045 0.955 42 H 0.057 0.943 43 H 0.046 0.954 44 H 0.020 0.980 45 H 0.093 0.907 46 H 0.073 0.927 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -17.211 -10.347 -8.865 21.951 hybrid contribution 1.256 0.131 1.080 1.662 sum -15.955 -10.216 -7.785 20.482 Atomic orbital electron populations 1.21781 0.95762 1.02069 1.01580 1.21580 0.96039 0.95137 1.03068 1.21389 0.92494 0.97783 1.01911 1.21396 0.97607 0.91293 1.02441 0.86823 1.21841 1.01830 1.02056 0.94179 1.21358 0.81837 0.92435 0.74542 1.90667 1.56398 1.48190 1.51694 1.46025 1.07269 1.09589 1.74006 1.21153 0.92092 0.83487 1.01299 1.22305 0.93412 0.96985 0.97965 0.88684 1.21497 0.88720 0.94182 0.94278 1.44789 1.31662 1.32936 1.26036 1.19376 0.99973 1.21510 0.96523 0.90516 1.25646 0.97975 1.00851 1.01225 1.70149 1.20652 1.36974 1.31754 0.85111 0.78325 0.76684 0.79475 1.21108 1.21961 1.19550 1.21324 0.92052 0.90887 0.89583 1.22524 0.96867 0.95025 0.97855 0.91408 1.21600 1.02182 1.00583 0.94119 0.92938 0.91649 0.93387 0.90333 0.91294 0.93255 0.92573 0.89231 0.92793 0.91160 0.75093 0.93271 0.90897 0.96098 0.95460 0.94260 0.95387 0.97963 0.90740 0.92677 0.92640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.94 9.91 71.98 0.71 -1.23 16 2 C -0.12 -1.52 5.69 30.59 0.17 -1.34 16 3 C -0.10 -1.76 4.03 30.59 0.12 -1.64 16 4 C -0.11 -1.81 2.72 -11.54 -0.03 -1.84 16 5 H 0.11 1.59 8.14 -2.39 -0.02 1.57 16 6 C -0.14 -1.75 8.84 71.98 0.64 -1.11 16 7 C 0.51 12.91 7.15 87.66 0.63 13.54 16 8 O -0.59 -20.06 15.92 -3.04 -0.05 -20.11 16 9 N -0.72 -16.87 5.32 -463.06 -2.46 -19.33 16 10 C 0.14 4.02 5.00 86.38 0.43 4.45 16 11 C -0.09 -2.74 2.44 -9.61 -0.02 -2.76 16 12 H 0.09 2.69 8.04 -2.38 -0.02 2.67 16 13 C 0.14 5.48 6.64 86.73 0.58 6.05 16 14 N -0.63 -32.33 3.40 -691.04 -2.35 -34.68 16 15 C -0.24 -13.84 10.24 84.03 0.86 -12.98 16 16 H 0.08 4.18 7.85 -2.91 -0.02 4.16 16 17 C -0.06 -3.63 5.40 84.86 0.46 -3.18 16 18 N -0.95 -57.07 10.68 21.65 0.23 -56.84 16 19 Si 0.98 45.91 29.56 68.60 2.03 47.94 16 20 H -0.28 -13.06 7.11 99.48 0.71 -12.36 16 21 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 22 H -0.27 -12.15 7.11 99.48 0.71 -11.45 16 23 C 0.19 9.10 4.91 87.02 0.43 9.53 16 24 C -0.10 -3.66 3.11 -9.24 -0.03 -3.69 16 25 H 0.07 2.47 8.05 -2.38 -0.02 2.45 16 26 C -0.13 -3.63 9.32 71.98 0.67 -2.96 16 27 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 28 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 29 H 0.05 0.66 8.14 -2.38 -0.02 0.64 16 30 H 0.08 0.78 6.57 -2.39 -0.02 0.76 16 31 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.05 1.09 7.96 -2.38 -0.02 1.07 16 33 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 34 H 0.09 0.77 6.57 -2.39 -0.02 0.75 16 35 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 36 H 0.07 0.76 7.57 -2.39 -0.02 0.74 16 37 H 0.41 7.80 7.82 -92.70 -0.73 7.07 16 38 H 0.05 1.58 8.00 -2.39 -0.02 1.56 16 39 H 0.07 1.97 8.12 -2.39 -0.02 1.95 16 40 H 0.02 0.85 7.73 -2.39 -0.02 0.83 16 41 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 42 H 0.25 14.51 8.31 -92.71 -0.77 13.74 16 43 H 0.03 1.56 6.93 -2.39 -0.02 1.54 16 44 H 0.00 0.13 7.93 -2.39 -0.02 0.11 16 45 H 0.07 1.73 8.12 -2.38 -0.02 1.71 16 46 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 47 H 0.05 1.57 8.08 -2.39 -0.02 1.55 16 Total: -1.00 -70.96 368.55 3.20 -67.76 By element: Atomic # 1 Polarization: 14.24 SS G_CDS: 0.19 Total: 14.43 kcal Atomic # 6 Polarization: -4.78 SS G_CDS: 5.62 Total: 0.84 kcal Atomic # 7 Polarization: -106.27 SS G_CDS: -4.58 Total: -110.85 kcal Atomic # 8 Polarization: -20.06 SS G_CDS: -0.05 Total: -20.11 kcal Atomic # 14 Polarization: 45.91 SS G_CDS: 2.03 Total: 47.94 kcal Total: -70.96 3.20 -67.76 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001101828587.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.984 kcal (2) G-P(sol) polarization free energy of solvation -70.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds