Wall clock time and date at job start Tue Mar 31 2020 06:17:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47097 * 2 1 4 4 C 1.53001 * 109.47097 * 180.02562 * 3 2 1 5 5 H 1.09004 * 109.46978 * 54.99922 * 4 3 2 6 6 C 1.53002 * 109.47447 * 295.00245 * 4 3 2 7 7 C 1.50701 * 109.47410 * 174.99880 * 4 3 2 8 8 O 1.21287 * 119.99524 * 0.02562 * 7 4 3 9 9 N 1.34776 * 120.00277 * 179.97438 * 7 4 3 10 10 C 1.46501 * 119.99946 * 180.02562 * 9 7 4 11 11 C 1.53005 * 109.46794 * 180.02562 * 10 9 7 12 12 H 1.08996 * 110.63831 * 54.30072 * 11 10 9 13 13 C 1.54322 * 110.72035 * 291.15770 * 11 10 9 14 14 N 1.47015 * 107.27201 * 219.26924 * 13 11 10 15 15 C 1.36940 * 125.65158 * 178.97647 * 14 13 11 16 16 H 1.07993 * 119.99693 * 349.93645 * 15 14 13 17 17 C 1.38810 * 119.99983 * 169.94195 * 15 14 13 18 18 N 1.31613 * 120.00397 * 350.42160 * 17 15 14 19 19 Si 1.86802 * 119.99666 * 170.42275 * 17 15 14 20 20 H 1.48495 * 109.47147 * 94.14119 * 19 17 15 21 21 H 1.48500 * 109.47054 * 214.13856 * 19 17 15 22 22 H 1.48501 * 109.47259 * 334.13744 * 19 17 15 23 23 C 1.47429 * 108.70197 * 358.94352 * 14 13 11 24 24 C 1.54901 * 104.83474 * 24.12802 * 23 14 13 25 25 H 1.08995 * 111.00497 * 81.06526 * 24 23 14 26 26 C 1.53001 * 111.00719 * 204.92143 * 24 23 14 27 27 H 1.09003 * 109.46940 * 299.99679 * 1 2 3 28 28 H 1.08997 * 109.46998 * 59.99651 * 1 2 3 29 29 H 1.08998 * 109.47199 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.46940 * 240.00321 * 2 1 3 31 31 H 1.08997 * 109.46998 * 120.00349 * 2 1 3 32 32 H 1.09003 * 109.46964 * 60.00336 * 3 2 1 33 33 H 1.08997 * 109.47481 * 300.00052 * 3 2 1 34 34 H 1.08995 * 109.47274 * 179.97438 * 6 4 3 35 35 H 1.08996 * 109.46950 * 300.00441 * 6 4 3 36 36 H 1.09001 * 109.46862 * 59.99951 * 6 4 3 37 37 H 0.97001 * 119.99832 * 0.02562 * 9 7 4 38 38 H 1.08995 * 109.47186 * 60.00576 * 10 9 7 39 39 H 1.09001 * 109.47291 * 300.00389 * 10 9 7 40 40 H 1.09004 * 109.88291 * 338.68775 * 13 11 10 41 41 H 1.08998 * 109.88449 * 99.85067 * 13 11 10 42 42 H 0.97002 * 120.00714 * 180.02562 * 18 17 15 43 43 H 1.09000 * 110.36956 * 142.97350 * 23 14 13 44 44 H 1.09008 * 110.36400 * 265.28847 * 23 14 13 45 45 H 1.08996 * 109.47153 * 172.19628 * 26 24 23 46 46 H 1.08998 * 109.46615 * 292.19531 * 26 24 23 47 47 H 1.09003 * 109.46958 * 52.19219 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 1 3.9330 0.8531 -0.8427 6 6 4.0806 0.8326 1.3064 7 6 4.0724 2.8579 -0.1245 8 8 3.2841 3.7763 -0.2039 9 7 5.3974 3.1033 -0.1460 10 6 5.8857 4.4793 -0.2658 11 6 7.4157 4.4792 -0.2666 12 1 7.7995 3.8145 -1.0405 13 6 7.9624 4.0767 1.1193 14 7 9.1336 4.9234 1.3893 15 6 9.8948 4.8935 2.5272 16 1 9.5623 4.3272 3.3845 17 6 11.0938 5.5911 2.5787 18 7 11.5929 6.1236 1.4835 19 14 11.9988 5.7741 4.2026 20 1 13.0097 4.6939 4.3303 21 1 12.6772 7.0944 4.2452 22 1 11.0290 5.6795 5.3232 23 6 9.3533 5.8095 0.2316 24 6 7.9685 5.9169 -0.4540 25 1 7.3374 6.6472 0.0523 26 6 8.1162 6.2583 -1.9381 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 1.6767 1.9563 0.8900 33 1 1.6767 1.9563 -0.8899 34 1 5.1706 0.8322 1.3057 35 1 3.7176 1.4218 2.1484 36 1 3.7173 -0.1912 1.3959 37 1 6.0278 2.3687 -0.0821 38 1 5.5225 5.0683 0.5763 39 1 5.5222 4.9140 -1.1970 40 1 7.2008 4.2437 1.8810 41 1 8.2575 3.0275 1.1110 42 1 12.4309 6.6108 1.5194 43 1 9.6893 6.7916 0.5640 44 1 10.0811 5.3694 -0.4502 45 1 7.1433 6.1918 -2.4249 46 1 8.5054 7.2713 -2.0408 47 1 8.8054 5.5552 -2.4058 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001101828588.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:36 Heat of formation + Delta-G solvation = -49.447064 kcal Electronic energy + Delta-G solvation = -22707.953214 eV Core-core repulsion = 19503.974913 eV Total energy + Delta-G solvation = -3203.978301 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.96403 -38.09376 -36.12947 -34.62623 -33.00873 -32.13568 -30.75014 -29.20879 -26.81601 -26.04292 -25.29088 -23.95713 -22.60771 -21.21509 -20.08774 -19.85582 -19.12255 -17.11294 -16.65631 -16.00467 -15.78182 -15.13562 -14.92018 -14.45106 -14.14806 -13.86046 -13.76178 -13.46825 -13.06614 -12.82089 -12.66608 -12.53664 -12.43510 -12.07902 -11.86515 -11.59317 -11.54632 -11.39236 -11.18451 -11.14636 -11.01045 -10.82552 -10.78986 -10.72447 -10.23343 -10.03058 -9.96036 -9.87219 -9.65985 -9.43629 -8.90454 -8.58687 -6.80514 -5.75572 -3.07997 2.72206 3.27899 3.38654 3.44703 3.46799 4.48239 4.53971 4.57932 4.70283 4.95372 5.01862 5.08681 5.12122 5.23976 5.28242 5.34851 5.45590 5.46473 5.56389 5.59016 5.63468 5.66951 5.75512 5.76084 5.86644 5.89826 5.93347 6.05814 6.11430 6.13929 6.18750 6.19731 6.26161 6.46877 6.52181 6.58691 6.62602 6.77372 6.94576 7.51222 7.59049 7.60815 7.78117 8.25547 8.31333 9.18853 9.80862 10.48620 11.37501 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.024033 B = 0.003288 C = 0.002973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1164.805941 B = 8514.024853 C = 9416.600929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.126 4.126 3 C -0.100 4.100 4 C -0.112 4.112 5 H 0.095 0.905 6 C -0.147 4.147 7 C 0.513 3.487 8 O -0.546 6.546 9 N -0.725 5.725 10 C 0.132 3.868 11 C -0.109 4.109 12 H 0.077 0.923 13 C 0.142 3.858 14 N -0.604 5.604 15 C -0.229 4.229 16 H 0.075 0.925 17 C -0.007 4.007 18 N -0.918 5.918 19 Si 0.910 3.090 20 H -0.289 1.289 21 H -0.290 1.290 22 H -0.281 1.281 23 C 0.180 3.820 24 C -0.113 4.113 25 H 0.071 0.929 26 C -0.135 4.135 27 H 0.054 0.946 28 H 0.053 0.947 29 H 0.052 0.948 30 H 0.060 0.940 31 H 0.064 0.936 32 H 0.068 0.932 33 H 0.069 0.931 34 H 0.062 0.938 35 H 0.061 0.939 36 H 0.068 0.932 37 H 0.401 0.599 38 H 0.067 0.933 39 H 0.064 0.936 40 H 0.024 0.976 41 H 0.018 0.982 42 H 0.253 0.747 43 H 0.068 0.932 44 H 0.028 0.972 45 H 0.045 0.955 46 H 0.054 0.946 47 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.885 -10.467 -5.829 19.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.164 4.164 3 C -0.138 4.138 4 C -0.133 4.133 5 H 0.113 0.887 6 C -0.204 4.204 7 C 0.299 3.701 8 O -0.424 6.424 9 N -0.376 5.376 10 C 0.009 3.991 11 C -0.128 4.128 12 H 0.095 0.905 13 C 0.016 3.984 14 N -0.330 5.330 15 C -0.358 4.358 16 H 0.093 0.907 17 C -0.204 4.204 18 N -0.565 5.565 19 Si 0.740 3.260 20 H -0.216 1.216 21 H -0.216 1.216 22 H -0.206 1.206 23 C 0.055 3.945 24 C -0.133 4.133 25 H 0.089 0.911 26 C -0.192 4.192 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.071 0.929 30 H 0.079 0.921 31 H 0.083 0.917 32 H 0.087 0.913 33 H 0.088 0.912 34 H 0.081 0.919 35 H 0.080 0.920 36 H 0.087 0.913 37 H 0.235 0.765 38 H 0.086 0.914 39 H 0.082 0.918 40 H 0.042 0.958 41 H 0.036 0.964 42 H 0.063 0.937 43 H 0.086 0.914 44 H 0.046 0.954 45 H 0.064 0.936 46 H 0.073 0.927 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -16.239 -9.699 -5.798 19.783 hybrid contribution 0.990 -0.274 0.841 1.328 sum -15.249 -9.973 -4.956 18.883 Atomic orbital electron populations 1.21762 0.95848 1.01394 1.01978 1.21606 0.95951 0.96762 1.02048 1.21424 0.92369 0.96497 1.03519 1.21346 0.97776 0.93632 1.00534 0.88691 1.21839 1.01440 1.01233 0.95896 1.20660 0.82284 0.91264 0.75842 1.90684 1.55403 1.46532 1.49772 1.46112 1.06957 1.10051 1.74444 1.21422 0.93705 0.82264 1.01733 1.22472 0.92412 0.98954 0.98969 0.90492 1.21330 0.90460 0.93998 0.92655 1.44465 1.30706 1.40354 1.17443 1.19007 0.99540 1.27366 0.89859 0.90727 1.24816 0.96889 1.01373 0.97299 1.69950 1.20519 1.40588 1.25427 0.86140 0.79581 0.77239 0.83024 1.21630 1.21596 1.20610 1.21452 0.89427 0.96070 0.87514 1.22586 1.00539 0.94277 0.95875 0.91076 1.21653 1.00495 1.01463 0.95615 0.92691 0.92740 0.92887 0.92080 0.91701 0.91300 0.91201 0.91916 0.91979 0.91308 0.76500 0.91423 0.91765 0.95849 0.96401 0.93706 0.91373 0.95434 0.93600 0.92720 0.92815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 9.91 37.16 0.37 -0.70 16 2 C -0.13 -0.93 5.69 -26.73 -0.15 -1.08 16 3 C -0.10 -0.96 4.03 -26.73 -0.11 -1.07 16 4 C -0.11 -1.07 2.72 -91.77 -0.25 -1.32 16 5 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 6 C -0.15 -1.24 8.84 37.16 0.33 -0.91 16 7 C 0.51 6.87 7.16 -10.99 -0.08 6.79 16 8 O -0.55 -9.42 15.92 5.55 0.09 -9.33 16 9 N -0.72 -9.28 5.32 -60.29 -0.32 -9.60 16 10 C 0.13 1.96 5.01 -4.04 -0.02 1.94 16 11 C -0.11 -1.79 2.45 -88.78 -0.22 -2.01 16 12 H 0.08 1.20 8.04 -51.93 -0.42 0.79 16 13 C 0.14 2.86 6.64 -3.07 -0.02 2.84 16 14 N -0.60 -15.31 3.39 -170.08 -0.58 -15.89 16 15 C -0.23 -6.40 10.24 -15.06 -0.15 -6.55 16 16 H 0.07 2.02 7.85 -52.49 -0.41 1.61 16 17 C -0.01 -0.20 5.40 -17.43 -0.09 -0.30 16 18 N -0.92 -26.86 10.68 55.49 0.59 -26.26 16 19 Si 0.91 22.04 29.56 -169.99 -5.03 17.02 16 20 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 21 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 22 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 23 C 0.18 4.28 4.89 -2.53 -0.01 4.27 16 24 C -0.11 -2.05 3.09 -88.47 -0.27 -2.32 16 25 H 0.07 1.31 8.05 -51.93 -0.42 0.89 16 26 C -0.13 -2.05 9.31 37.16 0.35 -1.70 16 27 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 29 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.06 0.44 6.57 -51.93 -0.34 0.10 16 32 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.07 0.75 7.95 -51.93 -0.41 0.34 16 34 H 0.06 0.51 7.56 -51.93 -0.39 0.12 16 35 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.07 0.47 6.57 -51.93 -0.34 0.13 16 37 H 0.40 4.36 7.82 -40.82 -0.32 4.04 16 38 H 0.07 1.12 8.00 -51.93 -0.42 0.70 16 39 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 40 H 0.02 0.48 7.73 -51.93 -0.40 0.08 16 41 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 42 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 43 H 0.07 1.82 6.94 -51.93 -0.36 1.46 16 44 H 0.03 0.71 7.91 -51.92 -0.41 0.30 16 45 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 46 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 47 H 0.05 0.81 8.07 -51.93 -0.42 0.39 16 LS Contribution 368.52 15.07 5.55 5.55 Total: -1.00 -31.81 368.52 -8.87 -40.69 By element: Atomic # 1 Polarization: 8.81 SS G_CDS: -8.85 Total: -0.04 kcal Atomic # 6 Polarization: -1.79 SS G_CDS: -0.34 Total: -2.13 kcal Atomic # 7 Polarization: -51.45 SS G_CDS: -0.31 Total: -51.76 kcal Atomic # 8 Polarization: -9.42 SS G_CDS: 0.09 Total: -9.33 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.03 Total: 17.02 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -31.81 -8.87 -40.69 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001101828588.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.762 kcal (2) G-P(sol) polarization free energy of solvation -31.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds