Wall clock time and date at job start Tue Mar 31 2020 06:17:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47097 * 2 1 4 4 C 1.53001 * 109.47097 * 180.02562 * 3 2 1 5 5 H 1.09004 * 109.46978 * 54.99922 * 4 3 2 6 6 C 1.53002 * 109.47447 * 295.00245 * 4 3 2 7 7 C 1.50701 * 109.47410 * 174.99880 * 4 3 2 8 8 O 1.21287 * 119.99524 * 0.02562 * 7 4 3 9 9 N 1.34776 * 120.00277 * 179.97438 * 7 4 3 10 10 C 1.46501 * 119.99946 * 180.02562 * 9 7 4 11 11 C 1.53005 * 109.46794 * 180.02562 * 10 9 7 12 12 H 1.08996 * 110.63831 * 54.30072 * 11 10 9 13 13 C 1.54322 * 110.72035 * 291.15770 * 11 10 9 14 14 N 1.47015 * 107.27201 * 219.26924 * 13 11 10 15 15 C 1.36940 * 125.65158 * 178.97647 * 14 13 11 16 16 H 1.07993 * 119.99693 * 349.93645 * 15 14 13 17 17 C 1.38810 * 119.99983 * 169.94195 * 15 14 13 18 18 N 1.31613 * 120.00397 * 350.42160 * 17 15 14 19 19 Si 1.86802 * 119.99666 * 170.42275 * 17 15 14 20 20 H 1.48495 * 109.47147 * 94.14119 * 19 17 15 21 21 H 1.48500 * 109.47054 * 214.13856 * 19 17 15 22 22 H 1.48501 * 109.47259 * 334.13744 * 19 17 15 23 23 C 1.47429 * 108.70197 * 358.94352 * 14 13 11 24 24 C 1.54901 * 104.83474 * 24.12802 * 23 14 13 25 25 H 1.08995 * 111.00497 * 81.06526 * 24 23 14 26 26 C 1.53001 * 111.00719 * 204.92143 * 24 23 14 27 27 H 1.09003 * 109.46940 * 299.99679 * 1 2 3 28 28 H 1.08997 * 109.46998 * 59.99651 * 1 2 3 29 29 H 1.08998 * 109.47199 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.46940 * 240.00321 * 2 1 3 31 31 H 1.08997 * 109.46998 * 120.00349 * 2 1 3 32 32 H 1.09003 * 109.46964 * 60.00336 * 3 2 1 33 33 H 1.08997 * 109.47481 * 300.00052 * 3 2 1 34 34 H 1.08995 * 109.47274 * 179.97438 * 6 4 3 35 35 H 1.08996 * 109.46950 * 300.00441 * 6 4 3 36 36 H 1.09001 * 109.46862 * 59.99951 * 6 4 3 37 37 H 0.97001 * 119.99832 * 0.02562 * 9 7 4 38 38 H 1.08995 * 109.47186 * 60.00576 * 10 9 7 39 39 H 1.09001 * 109.47291 * 300.00389 * 10 9 7 40 40 H 1.09004 * 109.88291 * 338.68775 * 13 11 10 41 41 H 1.08998 * 109.88449 * 99.85067 * 13 11 10 42 42 H 0.97002 * 120.00714 * 180.02562 * 18 17 15 43 43 H 1.09000 * 110.36956 * 142.97350 * 23 14 13 44 44 H 1.09008 * 110.36400 * 265.28847 * 23 14 13 45 45 H 1.08996 * 109.47153 * 172.19628 * 26 24 23 46 46 H 1.08998 * 109.46615 * 292.19531 * 26 24 23 47 47 H 1.09003 * 109.46958 * 52.19219 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 1 3.9330 0.8531 -0.8427 6 6 4.0806 0.8326 1.3064 7 6 4.0724 2.8579 -0.1245 8 8 3.2841 3.7763 -0.2039 9 7 5.3974 3.1033 -0.1460 10 6 5.8857 4.4793 -0.2658 11 6 7.4157 4.4792 -0.2666 12 1 7.7995 3.8145 -1.0405 13 6 7.9624 4.0767 1.1193 14 7 9.1336 4.9234 1.3893 15 6 9.8948 4.8935 2.5272 16 1 9.5623 4.3272 3.3845 17 6 11.0938 5.5911 2.5787 18 7 11.5929 6.1236 1.4835 19 14 11.9988 5.7741 4.2026 20 1 13.0097 4.6939 4.3303 21 1 12.6772 7.0944 4.2452 22 1 11.0290 5.6795 5.3232 23 6 9.3533 5.8095 0.2316 24 6 7.9685 5.9169 -0.4540 25 1 7.3374 6.6472 0.0523 26 6 8.1162 6.2583 -1.9381 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 1.6767 1.9563 0.8900 33 1 1.6767 1.9563 -0.8899 34 1 5.1706 0.8322 1.3057 35 1 3.7176 1.4218 2.1484 36 1 3.7173 -0.1912 1.3959 37 1 6.0278 2.3687 -0.0821 38 1 5.5225 5.0683 0.5763 39 1 5.5222 4.9140 -1.1970 40 1 7.2008 4.2437 1.8810 41 1 8.2575 3.0275 1.1110 42 1 12.4309 6.6108 1.5194 43 1 9.6893 6.7916 0.5640 44 1 10.0811 5.3694 -0.4502 45 1 7.1433 6.1918 -2.4249 46 1 8.5054 7.2713 -2.0408 47 1 8.8054 5.5552 -2.4058 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001101828588.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:35 Heat of formation + Delta-G solvation = -68.692832 kcal Electronic energy + Delta-G solvation = -22708.787773 eV Core-core repulsion = 19503.974913 eV Total energy + Delta-G solvation = -3204.812860 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.06021 -39.64302 -36.94270 -36.01807 -34.69642 -32.91394 -32.55846 -30.64352 -27.87031 -27.48293 -26.76627 -25.12329 -23.98139 -22.13408 -21.49133 -21.21459 -20.39400 -18.84160 -17.99170 -17.19597 -16.75863 -16.65489 -16.18578 -15.81782 -15.57463 -14.96047 -14.84433 -14.68297 -14.46815 -14.06681 -13.89516 -13.49078 -13.45298 -13.37726 -13.12813 -13.07993 -12.76963 -12.71394 -12.64962 -12.46718 -12.12282 -11.97247 -11.86201 -11.82125 -11.71271 -11.62602 -11.41155 -11.38715 -11.32535 -10.72119 -10.60809 -10.05357 -8.85696 -7.88956 -5.23226 1.44896 1.46540 1.56019 1.67862 2.24077 2.48612 3.29673 3.60239 3.69785 3.80050 3.86088 3.89040 3.96141 4.00310 4.33333 4.36568 4.40604 4.43423 4.49115 4.61319 4.66097 4.73531 4.80270 4.83293 4.86304 4.93223 4.96904 4.98561 5.05650 5.07219 5.14839 5.16424 5.25863 5.33063 5.36014 5.40730 5.44651 5.46903 5.50490 5.55037 5.66056 5.77506 6.20374 6.59003 7.08150 7.28102 7.76542 8.42905 9.22928 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.024033 B = 0.003288 C = 0.002973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1164.805941 B = 8514.024853 C = 9416.600929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.121 4.121 3 C -0.098 4.098 4 C -0.104 4.104 5 H 0.122 0.878 6 C -0.144 4.144 7 C 0.510 3.490 8 O -0.589 6.589 9 N -0.717 5.717 10 C 0.144 3.856 11 C -0.088 4.088 12 H 0.095 0.905 13 C 0.139 3.861 14 N -0.628 5.628 15 C -0.245 4.245 16 H 0.077 0.923 17 C -0.063 4.063 18 N -0.947 5.947 19 Si 0.976 3.024 20 H -0.284 1.284 21 H -0.293 1.293 22 H -0.271 1.271 23 C 0.186 3.814 24 C -0.102 4.102 25 H 0.067 0.933 26 C -0.127 4.127 27 H 0.049 0.951 28 H 0.049 0.951 29 H 0.065 0.935 30 H 0.073 0.927 31 H 0.075 0.925 32 H 0.050 0.950 33 H 0.054 0.946 34 H 0.067 0.933 35 H 0.046 0.954 36 H 0.091 0.909 37 H 0.413 0.587 38 H 0.049 0.951 39 H 0.073 0.927 40 H 0.021 0.979 41 H 0.027 0.973 42 H 0.248 0.752 43 H 0.028 0.972 44 H 0.002 0.998 45 H 0.074 0.926 46 H 0.054 0.946 47 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.872 -12.404 -6.243 21.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.158 4.158 3 C -0.136 4.136 4 C -0.125 4.125 5 H 0.139 0.861 6 C -0.202 4.202 7 C 0.298 3.702 8 O -0.469 6.469 9 N -0.369 5.369 10 C 0.020 3.980 11 C -0.107 4.107 12 H 0.113 0.887 13 C 0.014 3.986 14 N -0.354 5.354 15 C -0.374 4.374 16 H 0.095 0.905 17 C -0.257 4.257 18 N -0.595 5.595 19 Si 0.804 3.196 20 H -0.211 1.211 21 H -0.220 1.220 22 H -0.195 1.195 23 C 0.061 3.939 24 C -0.122 4.122 25 H 0.086 0.914 26 C -0.185 4.185 27 H 0.068 0.932 28 H 0.069 0.931 29 H 0.084 0.916 30 H 0.091 0.909 31 H 0.093 0.907 32 H 0.069 0.931 33 H 0.072 0.928 34 H 0.086 0.914 35 H 0.065 0.935 36 H 0.110 0.890 37 H 0.249 0.751 38 H 0.067 0.933 39 H 0.091 0.909 40 H 0.039 0.961 41 H 0.045 0.955 42 H 0.057 0.943 43 H 0.046 0.954 44 H 0.020 0.980 45 H 0.093 0.907 46 H 0.073 0.927 47 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -17.239 -11.678 -6.210 21.728 hybrid contribution 1.268 0.319 0.988 1.639 sum -15.971 -11.359 -5.222 20.282 Atomic orbital electron populations 1.21783 0.95798 1.02066 1.01563 1.21580 0.96008 0.95104 1.03107 1.21391 0.92490 0.97815 1.01902 1.21385 0.97576 0.91288 1.02218 0.86059 1.21852 1.01743 1.02106 0.94476 1.21369 0.81832 0.92466 0.74537 1.90669 1.56393 1.48193 1.51695 1.46024 1.07278 1.09550 1.74038 1.21147 0.92073 0.83373 1.01423 1.22307 0.93418 0.97825 0.97144 0.88696 1.21489 0.88703 0.93705 0.94732 1.44795 1.31611 1.41780 1.17232 1.19376 0.99936 1.27034 0.91021 0.90511 1.25643 0.97987 1.01551 1.00514 1.70147 1.20668 1.41413 1.27300 0.85115 0.78334 0.76792 0.79381 1.21109 1.21972 1.19548 1.21243 0.92096 0.93498 0.87027 1.22441 0.96865 0.95508 0.97422 0.91415 1.21606 1.02178 1.01510 0.93211 0.93233 0.93136 0.91639 0.90851 0.90680 0.93105 0.92757 0.91402 0.93466 0.89046 0.75091 0.93295 0.90863 0.96098 0.95463 0.94266 0.95379 0.97977 0.90733 0.92692 0.92653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.92 9.91 71.98 0.71 -1.21 16 2 C -0.12 -1.49 5.69 30.59 0.17 -1.31 16 3 C -0.10 -1.75 4.03 30.59 0.12 -1.63 16 4 C -0.10 -1.75 2.72 -11.54 -0.03 -1.78 16 5 H 0.12 1.47 8.14 -2.38 -0.02 1.45 16 6 C -0.14 -2.08 8.84 71.98 0.64 -1.44 16 7 C 0.51 12.87 7.16 87.66 0.63 13.49 16 8 O -0.59 -20.03 15.92 -3.05 -0.05 -20.08 16 9 N -0.72 -16.84 5.32 -463.05 -2.46 -19.31 16 10 C 0.14 4.02 5.01 86.38 0.43 4.45 16 11 C -0.09 -2.75 2.45 -9.60 -0.02 -2.77 16 12 H 0.09 2.69 8.04 -2.39 -0.02 2.67 16 13 C 0.14 5.49 6.64 86.73 0.58 6.06 16 14 N -0.63 -32.29 3.39 -692.01 -2.35 -34.64 16 15 C -0.24 -13.82 10.24 84.03 0.86 -12.96 16 16 H 0.08 4.18 7.85 -2.91 -0.02 4.15 16 17 C -0.06 -3.63 5.40 84.86 0.46 -3.17 16 18 N -0.95 -57.06 10.68 21.65 0.23 -56.83 16 19 Si 0.98 45.89 29.56 68.60 2.03 47.92 16 20 H -0.28 -13.06 7.11 99.48 0.71 -12.36 16 21 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 22 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 23 C 0.19 9.09 4.89 86.85 0.42 9.51 16 24 C -0.10 -3.65 3.09 -9.40 -0.03 -3.68 16 25 H 0.07 2.47 8.05 -2.39 -0.02 2.45 16 26 C -0.13 -3.65 9.31 71.98 0.67 -2.98 16 27 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 28 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 29 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.07 0.79 6.57 -2.39 -0.02 0.77 16 32 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.05 1.14 7.95 -2.39 -0.02 1.12 16 34 H 0.07 0.91 7.56 -2.39 -0.02 0.90 16 35 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 36 H 0.09 0.92 6.57 -2.39 -0.02 0.91 16 37 H 0.41 7.79 7.82 -92.71 -0.72 7.06 16 38 H 0.05 1.58 8.00 -2.39 -0.02 1.56 16 39 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 40 H 0.02 0.85 7.73 -2.38 -0.02 0.83 16 41 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 42 H 0.25 14.50 8.31 -92.71 -0.77 13.73 16 43 H 0.03 1.56 6.94 -2.39 -0.02 1.55 16 44 H 0.00 0.12 7.91 -2.38 -0.02 0.10 16 45 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 46 H 0.05 1.56 8.14 -2.39 -0.02 1.55 16 47 H 0.05 1.57 8.07 -2.39 -0.02 1.55 16 Total: -1.00 -70.94 368.52 3.20 -67.74 By element: Atomic # 1 Polarization: 14.42 SS G_CDS: 0.19 Total: 14.61 kcal Atomic # 6 Polarization: -5.02 SS G_CDS: 5.61 Total: 0.59 kcal Atomic # 7 Polarization: -106.20 SS G_CDS: -4.58 Total: -110.78 kcal Atomic # 8 Polarization: -20.03 SS G_CDS: -0.05 Total: -20.08 kcal Atomic # 14 Polarization: 45.89 SS G_CDS: 2.03 Total: 47.92 kcal Total: -70.94 3.20 -67.74 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001101828588.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.950 kcal (2) G-P(sol) polarization free energy of solvation -70.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds