Wall clock time and date at job start Tue Mar 31 2020 05:56:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.46891 * 2 1 4 4 C 1.52997 * 109.46947 * 179.97438 * 3 2 1 5 5 C 1.50706 * 109.47238 * 179.97438 * 4 3 2 6 6 O 1.21279 * 119.99507 * 0.02562 * 5 4 3 7 7 N 1.34774 * 120.00020 * 180.02562 * 5 4 3 8 8 C 1.46496 * 119.99544 * 180.02562 * 7 5 4 9 9 C 1.53005 * 109.47059 * 180.02562 * 8 7 5 10 10 C 1.52996 * 109.47571 * 180.02562 * 9 8 7 11 11 H 1.08995 * 110.88864 * 51.11419 * 10 9 8 12 12 C 1.54910 * 110.99998 * 287.19263 * 10 9 8 13 13 N 1.47420 * 104.83460 * 204.91473 * 12 10 9 14 14 C 1.36939 * 125.65213 * 204.08607 * 13 12 10 15 15 H 1.07996 * 119.99984 * 0.02562 * 14 13 12 16 16 C 1.38811 * 119.99938 * 180.02562 * 14 13 12 17 17 N 1.31614 * 120.00393 * 0.02562 * 16 14 13 18 18 Si 1.86805 * 119.99911 * 179.97438 * 16 14 13 19 19 H 1.48496 * 109.47051 * 89.99738 * 18 16 14 20 20 H 1.48500 * 109.46917 * 210.00147 * 18 16 14 21 21 H 1.48496 * 109.46967 * 329.99751 * 18 16 14 22 22 C 1.47030 * 108.70186 * 24.12959 * 13 12 10 23 23 C 1.54323 * 107.26842 * 358.93996 * 22 13 12 24 24 H 1.09000 * 110.71855 * 96.17257 * 23 22 13 25 25 C 1.53001 * 110.87186 * 219.37290 * 23 22 13 26 26 H 1.09002 * 109.47097 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47844 * 299.99997 * 1 2 3 28 28 H 1.09001 * 109.47248 * 60.00689 * 1 2 3 29 29 H 1.08992 * 109.47056 * 239.99654 * 2 1 3 30 30 H 1.08996 * 109.46698 * 119.99770 * 2 1 3 31 31 H 1.09001 * 109.47372 * 59.99964 * 3 2 1 32 32 H 1.09004 * 109.47108 * 299.99708 * 3 2 1 33 33 H 1.09001 * 109.46832 * 59.99979 * 4 3 2 34 34 H 1.09000 * 109.47611 * 300.00276 * 4 3 2 35 35 H 0.96994 * 119.99756 * 0.02562 * 7 5 4 36 36 H 1.08996 * 109.47366 * 299.99598 * 8 7 5 37 37 H 1.08992 * 109.47635 * 60.00246 * 8 7 5 38 38 H 1.09004 * 109.46832 * 299.99894 * 9 8 7 39 39 H 1.09001 * 109.47420 * 59.99456 * 9 8 7 40 40 H 1.09004 * 110.37164 * 323.75509 * 12 10 9 41 41 H 1.09006 * 110.36802 * 86.07621 * 12 10 9 42 42 H 0.97004 * 120.00678 * 179.97438 * 17 16 14 43 43 H 1.08995 * 109.87957 * 239.52552 * 22 13 12 44 44 H 1.09001 * 109.88054 * 118.36031 * 22 13 12 45 45 H 1.09000 * 109.46986 * 173.61001 * 25 23 22 46 46 H 1.09002 * 109.47049 * 293.60906 * 25 23 22 47 47 H 1.09000 * 109.46918 * 53.61326 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4425 0.0006 5 6 4.0723 2.8634 0.0000 6 8 3.2841 3.7851 -0.0004 7 7 5.3973 3.1096 -0.0001 8 6 5.8856 4.4908 -0.0002 9 6 7.4156 4.4909 -0.0009 10 6 7.9256 5.9334 -0.0003 11 1 7.4529 6.5124 0.7929 12 6 7.7070 6.6001 -1.3814 13 7 8.7258 7.6631 -1.4529 14 6 8.6510 8.7896 -2.2279 15 1 7.7891 8.9559 -2.8571 16 6 9.6829 9.7178 -2.2048 17 7 10.7335 9.5150 -1.4385 18 14 9.5811 11.2542 -3.2626 19 1 8.9199 12.3402 -2.4956 20 1 10.9502 11.6821 -3.6469 21 1 8.7923 10.9613 -4.4862 22 6 9.8362 7.3131 -0.5550 23 6 9.4715 5.9767 0.1252 24 1 9.9250 5.1384 -0.4037 25 6 9.8953 5.9798 1.5953 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3635 0.5138 0.8899 28 1 -0.3634 0.5137 -0.8900 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 1.6766 1.9563 0.8900 32 1 1.6766 1.9563 -0.8900 33 1 3.9336 0.9285 -0.8891 34 1 3.9330 0.9288 0.8908 35 1 6.0276 2.3724 -0.0001 36 1 5.5222 5.0046 -0.8901 37 1 5.5224 5.0047 0.8898 38 1 7.7794 3.9770 0.8889 39 1 7.7786 3.9772 -0.8911 40 1 7.8585 5.8750 -2.1811 41 1 6.7066 7.0288 -1.4416 42 1 11.4548 10.1634 -1.4226 43 1 9.9626 8.0902 0.1986 44 1 10.7553 7.1979 -1.1296 45 1 9.5278 5.0760 2.0813 46 1 10.9830 6.0104 1.6598 47 1 9.4771 6.8552 2.0921 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001102670520.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:06 Heat of formation + Delta-G solvation = -51.541744 kcal Electronic energy + Delta-G solvation = -22071.934481 eV Core-core repulsion = 18867.865348 eV Total energy + Delta-G solvation = -3204.069133 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.81577 -38.15661 -35.80594 -35.07655 -33.21890 -31.51022 -30.68666 -30.35961 -26.99349 -25.72335 -24.88642 -23.70485 -21.98414 -21.39069 -20.47943 -19.68369 -19.18616 -16.99275 -16.81041 -16.30162 -15.83535 -15.39149 -14.91505 -14.34624 -14.08427 -14.00187 -13.91946 -13.58169 -13.04931 -13.01963 -12.60377 -12.52792 -12.25666 -11.89688 -11.69720 -11.61491 -11.48167 -11.34392 -11.28736 -11.19484 -11.04417 -10.87111 -10.74419 -10.73974 -10.05938 -9.96391 -9.85957 -9.78752 -9.61192 -9.44949 -9.06937 -8.55814 -6.77332 -5.66586 -2.99553 2.59628 3.13232 3.43091 3.47993 3.49839 4.51387 4.54162 4.56290 4.64526 4.90454 4.98306 4.99732 5.12899 5.18336 5.29723 5.37797 5.49298 5.51513 5.52162 5.55772 5.63126 5.63335 5.71649 5.77685 5.84456 5.95477 5.96813 6.03176 6.09098 6.12513 6.24781 6.27374 6.38351 6.42971 6.54448 6.66254 6.69402 6.82709 7.04531 7.44063 7.62073 7.69316 7.88506 8.18155 8.31365 9.27442 9.87900 10.54519 11.45065 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.026606 B = 0.002695 C = 0.002489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1052.145524 B =10388.361758 C =11247.083086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.125 4.125 3 C -0.106 4.106 4 C -0.141 4.141 5 C 0.507 3.493 6 O -0.541 6.541 7 N -0.731 5.731 8 C 0.117 3.883 9 C -0.116 4.116 10 C -0.095 4.095 11 H 0.076 0.924 12 C 0.139 3.861 13 N -0.607 5.607 14 C -0.226 4.226 15 H 0.077 0.923 16 C -0.011 4.011 17 N -0.923 5.923 18 Si 0.911 3.089 19 H -0.289 1.289 20 H -0.291 1.291 21 H -0.282 1.282 22 C 0.184 3.816 23 C -0.115 4.115 24 H 0.063 0.937 25 C -0.133 4.133 26 H 0.053 0.947 27 H 0.054 0.946 28 H 0.055 0.945 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.092 0.908 34 H 0.091 0.909 35 H 0.399 0.601 36 H 0.071 0.929 37 H 0.066 0.934 38 H 0.064 0.936 39 H 0.068 0.932 40 H 0.017 0.983 41 H 0.037 0.963 42 H 0.251 0.749 43 H 0.047 0.953 44 H 0.039 0.961 45 H 0.042 0.958 46 H 0.051 0.949 47 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.233 -20.307 5.691 23.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.163 4.163 3 C -0.144 4.144 4 C -0.181 4.181 5 C 0.293 3.707 6 O -0.418 6.418 7 N -0.383 5.383 8 C -0.006 4.006 9 C -0.154 4.154 10 C -0.115 4.115 11 H 0.094 0.906 12 C 0.013 3.987 13 N -0.333 5.333 14 C -0.354 4.354 15 H 0.095 0.905 16 C -0.207 4.207 17 N -0.571 5.571 18 Si 0.742 3.258 19 H -0.216 1.216 20 H -0.217 1.217 21 H -0.207 1.207 22 C 0.059 3.941 23 C -0.134 4.134 24 H 0.082 0.918 25 C -0.190 4.190 26 H 0.072 0.928 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.110 0.890 34 H 0.109 0.891 35 H 0.232 0.768 36 H 0.089 0.911 37 H 0.084 0.916 38 H 0.083 0.917 39 H 0.086 0.914 40 H 0.034 0.966 41 H 0.055 0.945 42 H 0.062 0.938 43 H 0.065 0.935 44 H 0.057 0.943 45 H 0.061 0.939 46 H 0.070 0.930 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -11.665 -19.418 5.629 23.341 hybrid contribution 0.460 0.510 -0.567 0.891 sum -11.205 -18.907 5.062 22.553 Atomic orbital electron populations 1.21765 0.95727 1.01476 1.02091 1.21549 0.96151 0.96642 1.01913 1.21379 0.92771 0.96517 1.03716 1.21707 0.98174 0.93988 1.04237 1.20757 0.82264 0.91717 0.75954 1.90718 1.55295 1.46629 1.49193 1.46136 1.07060 1.09480 1.75633 1.21480 0.94504 0.81959 1.02665 1.21741 0.93155 0.98334 1.02153 1.22329 0.96230 0.93536 0.99437 0.90565 1.21618 0.93170 0.90840 0.93046 1.44483 1.18112 1.20735 1.50013 1.19074 1.03224 0.95654 1.17447 0.90510 1.24800 0.96781 0.98983 1.00092 1.69967 1.08918 1.36110 1.42074 0.86123 0.76712 0.83164 0.79813 1.21636 1.21729 1.20733 1.21201 0.90593 0.89994 0.92325 1.22482 0.94248 1.00719 0.95954 0.91827 1.21674 1.00833 1.00598 0.95932 0.92834 0.92656 0.92618 0.92004 0.92044 0.91218 0.91157 0.89000 0.89054 0.76755 0.91089 0.91575 0.91685 0.91372 0.96567 0.94495 0.93850 0.93469 0.94262 0.93850 0.93006 0.92767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 9.91 37.16 0.37 -0.60 16 2 C -0.12 -0.79 5.93 -26.73 -0.16 -0.95 16 3 C -0.11 -0.89 4.50 -26.73 -0.12 -1.01 16 4 C -0.14 -1.07 5.70 -27.88 -0.16 -1.23 16 5 C 0.51 5.95 7.83 -10.98 -0.09 5.87 16 6 O -0.54 -8.85 15.98 5.56 0.09 -8.76 16 7 N -0.73 -7.60 5.56 -60.30 -0.33 -7.94 16 8 C 0.12 1.50 5.58 -4.04 -0.02 1.48 16 9 C -0.12 -1.45 4.84 -26.73 -0.13 -1.58 16 10 C -0.10 -1.61 2.45 -88.47 -0.22 -1.82 16 11 H 0.08 1.33 8.05 -51.93 -0.42 0.91 16 12 C 0.14 2.91 6.18 -2.53 -0.02 2.89 16 13 N -0.61 -15.84 3.39 -170.07 -0.58 -16.41 16 14 C -0.23 -6.45 10.28 -15.06 -0.15 -6.60 16 15 H 0.08 2.13 7.83 -52.49 -0.41 1.72 16 16 C -0.01 -0.31 5.49 -17.43 -0.10 -0.40 16 17 N -0.92 -27.54 10.31 55.49 0.57 -26.97 16 18 Si 0.91 22.57 29.55 -169.99 -5.02 17.55 16 19 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 20 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 21 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 22 C 0.18 4.48 4.97 -3.06 -0.02 4.46 16 23 C -0.11 -2.08 3.01 -88.79 -0.27 -2.35 16 24 H 0.06 1.10 8.04 -51.93 -0.42 0.68 16 25 C -0.13 -2.06 9.17 37.16 0.34 -1.72 16 26 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 27 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.07 0.67 8.10 -51.93 -0.42 0.25 16 32 H 0.07 0.69 8.10 -51.93 -0.42 0.27 16 33 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.09 0.52 8.14 -51.93 -0.42 0.09 16 35 H 0.40 2.88 8.47 -40.82 -0.35 2.54 16 36 H 0.07 1.05 7.75 -51.93 -0.40 0.65 16 37 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 38 H 0.06 0.71 8.08 -51.93 -0.42 0.29 16 39 H 0.07 0.83 7.96 -51.93 -0.41 0.42 16 40 H 0.02 0.34 7.91 -51.93 -0.41 -0.07 16 41 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 43 H 0.05 1.28 7.02 -51.93 -0.36 0.91 16 44 H 0.04 1.07 7.50 -51.93 -0.39 0.68 16 45 H 0.04 0.56 8.08 -51.93 -0.42 0.14 16 46 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 47 H 0.05 0.88 8.07 -51.93 -0.42 0.46 16 LS Contribution 372.66 15.07 5.62 5.62 Total: -1.00 -33.24 372.66 -9.43 -42.67 By element: Atomic # 1 Polarization: 6.84 SS G_CDS: -9.04 Total: -2.19 kcal Atomic # 6 Polarization: -2.82 SS G_CDS: -0.73 Total: -3.55 kcal Atomic # 7 Polarization: -50.98 SS G_CDS: -0.34 Total: -51.32 kcal Atomic # 8 Polarization: -8.85 SS G_CDS: 0.09 Total: -8.76 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -5.02 Total: 17.55 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -33.24 -9.43 -42.67 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001102670520.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.875 kcal (2) G-P(sol) polarization free energy of solvation -33.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds