Wall clock time and date at job start Tue Mar 31 2020 05:54:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47401 * 2 1 4 4 C 1.52999 * 109.47364 * 179.97438 * 3 2 1 5 5 C 1.50701 * 109.47032 * 179.97438 * 4 3 2 6 6 O 1.21281 * 120.00382 * 0.02562 * 5 4 3 7 7 N 1.34774 * 120.00149 * 180.02562 * 5 4 3 8 8 C 1.47431 * 125.64341 * 0.03974 * 7 5 4 9 9 C 1.54912 * 104.82949 * 204.09147 * 8 7 5 10 10 H 1.09000 * 111.00254 * 81.07017 * 9 8 7 11 11 C 1.53004 * 111.00695 * 204.91801 * 9 8 7 12 12 C 1.55156 * 101.58604 * 322.99608 * 9 8 7 13 13 H 1.09000 * 110.86864 * 277.06858 * 12 9 8 14 14 C 1.52992 * 110.72497 * 153.86469 * 12 9 8 15 15 C 1.52997 * 109.47482 * 180.02562 * 14 12 9 16 16 N 1.46505 * 109.47212 * 179.97438 * 15 14 12 17 17 C 1.36936 * 119.99992 * 179.97438 * 16 15 14 18 18 H 1.08006 * 119.99834 * 0.02562 * 17 16 15 19 19 C 1.38801 * 120.00093 * 180.02562 * 17 16 15 20 20 N 1.31619 * 120.00176 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 120.00265 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.46725 * 59.99976 * 21 19 17 23 23 H 1.48498 * 109.47172 * 179.97438 * 21 19 17 24 24 H 1.48501 * 109.46920 * 300.00189 * 21 19 17 25 25 C 1.47023 * 125.65069 * 180.02562 * 7 5 4 26 26 H 1.08990 * 109.47157 * 300.00231 * 1 2 3 27 27 H 1.08998 * 109.46842 * 60.00415 * 1 2 3 28 28 H 1.09004 * 109.47148 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47539 * 239.99969 * 2 1 3 30 30 H 1.09006 * 109.47127 * 120.00167 * 2 1 3 31 31 H 1.09002 * 109.46799 * 59.99516 * 3 2 1 32 32 H 1.09006 * 109.47117 * 300.00174 * 3 2 1 33 33 H 1.08998 * 109.46760 * 60.00299 * 4 3 2 34 34 H 1.08998 * 109.47181 * 299.99771 * 4 3 2 35 35 H 1.08992 * 110.37314 * 322.93281 * 8 7 5 36 36 H 1.09008 * 110.36286 * 85.14824 * 8 7 5 37 37 H 1.08997 * 109.47132 * 172.19914 * 11 9 8 38 38 H 1.09005 * 109.47105 * 292.20409 * 11 9 8 39 39 H 1.09001 * 109.46710 * 52.19730 * 11 9 8 40 40 H 1.09002 * 109.47103 * 60.02094 * 14 12 9 41 41 H 1.08998 * 109.46862 * 300.02906 * 14 12 9 42 42 H 1.09002 * 109.47153 * 59.99783 * 15 14 12 43 43 H 1.09001 * 109.46832 * 299.99974 * 15 14 12 44 44 H 0.96996 * 119.99606 * 0.02562 * 16 15 14 45 45 H 0.97001 * 120.00803 * 179.97438 * 20 19 17 46 46 H 1.08996 * 109.87920 * 59.56468 * 25 7 5 47 47 H 1.08996 * 109.88311 * 298.39002 * 25 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 6 4.0724 2.8633 0.0000 6 8 3.2843 3.7851 -0.0004 7 7 5.3974 3.1096 -0.0001 8 6 6.4610 2.0887 -0.0005 9 6 7.6938 2.8003 0.6108 10 1 7.6361 2.8158 1.6992 11 6 8.9942 2.1441 0.1422 12 6 7.5501 4.2301 0.0258 13 1 7.9639 4.2810 -0.9813 14 6 8.2225 5.2582 0.9377 15 6 8.0635 6.6556 0.3353 16 7 8.7069 7.6402 1.2088 17 6 8.6931 8.9672 0.8715 18 1 8.2076 9.2882 -0.0384 19 6 9.3031 9.9000 1.6988 20 7 9.8952 9.5089 2.8073 21 14 9.2837 11.7105 1.2391 22 1 7.8787 12.1814 1.1421 23 1 9.9969 12.4932 2.2801 24 1 9.9595 11.8959 -0.0702 25 6 6.0215 4.4408 -0.0002 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 1.6766 1.9563 0.8900 32 1 1.6767 1.9563 -0.8900 33 1 3.9337 0.9285 -0.8891 34 1 3.9330 0.9288 0.8909 35 1 6.1703 1.2376 0.6152 36 1 6.6747 1.7639 -1.0189 37 1 9.8428 2.7434 0.4717 38 1 9.0695 1.1430 0.5668 39 1 8.9963 2.0783 -0.9458 40 1 9.2824 5.0218 1.0323 41 1 7.7551 5.2315 1.9220 42 1 7.0036 6.8920 0.2406 43 1 8.5310 6.6822 -0.6491 44 1 9.1432 7.3518 2.0257 45 1 10.3218 10.1606 3.3854 46 1 5.7088 4.9968 0.8836 47 1 5.7376 4.9833 -0.9019 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001103892182.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:43 Heat of formation + Delta-G solvation = -58.580930 kcal Electronic energy + Delta-G solvation = -22159.627956 eV Core-core repulsion = 18955.253581 eV Total energy + Delta-G solvation = -3204.374375 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.30242 -38.25196 -35.57319 -35.12133 -33.29421 -32.06012 -30.98332 -30.01794 -27.27680 -26.54248 -24.98416 -23.70999 -22.39894 -21.36194 -20.71515 -20.03794 -19.22853 -17.15307 -16.89233 -16.53693 -16.05904 -15.17985 -14.70807 -14.56825 -14.37229 -14.01051 -13.79010 -13.62874 -13.28197 -13.11470 -12.88788 -12.80060 -12.69226 -12.49903 -12.14272 -11.77631 -11.59349 -11.52944 -11.41232 -11.26981 -11.12746 -11.01684 -10.85913 -10.80400 -10.60041 -10.42284 -10.28347 -9.95922 -9.84072 -9.63045 -8.83033 -8.69187 -6.88490 -5.73010 -3.01534 2.58615 2.89662 3.47220 3.51068 3.52464 4.23685 4.34561 4.53713 4.57999 4.64447 4.67404 4.70851 4.95129 4.99640 5.13015 5.17450 5.21259 5.25218 5.33529 5.38916 5.49899 5.52267 5.53547 5.56347 5.61796 5.63710 5.73077 5.80457 5.84935 5.90415 5.97258 6.01440 6.01942 6.08846 6.13363 6.19250 6.32133 6.40525 6.41848 6.87043 6.91505 7.45873 7.73182 8.11959 8.46244 9.57014 10.15444 10.49976 11.49977 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.022185 B = 0.002841 C = 0.002583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1261.803461 B = 9854.750656 C =10836.726428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.124 4.124 3 C -0.106 4.106 4 C -0.135 4.135 5 C 0.523 3.477 6 O -0.540 6.540 7 N -0.621 5.621 8 C 0.103 3.897 9 C -0.102 4.102 10 H 0.087 0.913 11 C -0.140 4.140 12 C -0.089 4.089 13 H 0.086 0.914 14 C -0.115 4.115 15 C 0.151 3.849 16 N -0.734 5.734 17 C -0.238 4.238 18 H 0.069 0.931 19 C -0.016 4.016 20 N -0.935 5.935 21 Si 0.908 3.092 22 H -0.286 1.286 23 H -0.291 1.291 24 H -0.286 1.286 25 C 0.110 3.890 26 H 0.055 0.945 27 H 0.054 0.946 28 H 0.053 0.947 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.090 0.910 34 H 0.091 0.909 35 H 0.074 0.926 36 H 0.069 0.931 37 H 0.065 0.935 38 H 0.056 0.944 39 H 0.057 0.943 40 H 0.068 0.932 41 H 0.064 0.936 42 H 0.019 0.981 43 H 0.018 0.982 44 H 0.383 0.617 45 H 0.255 0.745 46 H 0.074 0.926 47 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.927 -24.419 -6.226 27.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.162 4.162 3 C -0.144 4.144 4 C -0.175 4.175 5 C 0.312 3.688 6 O -0.417 6.417 7 N -0.355 5.355 8 C -0.020 4.020 9 C -0.121 4.121 10 H 0.105 0.895 11 C -0.198 4.198 12 C -0.108 4.108 13 H 0.104 0.896 14 C -0.153 4.153 15 C 0.023 3.977 16 N -0.378 5.378 17 C -0.370 4.370 18 H 0.087 0.913 19 C -0.211 4.211 20 N -0.584 5.584 21 Si 0.739 3.261 22 H -0.213 1.213 23 H -0.217 1.217 24 H -0.213 1.213 25 C -0.012 4.012 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.072 0.928 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.089 0.911 32 H 0.088 0.912 33 H 0.109 0.891 34 H 0.109 0.891 35 H 0.092 0.908 36 H 0.088 0.912 37 H 0.084 0.916 38 H 0.075 0.925 39 H 0.076 0.924 40 H 0.087 0.913 41 H 0.083 0.917 42 H 0.037 0.963 43 H 0.035 0.965 44 H 0.217 0.783 45 H 0.065 0.935 46 H 0.092 0.908 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -10.483 -23.771 -6.315 26.736 hybrid contribution 0.286 0.954 0.057 0.998 sum -10.197 -22.817 -6.258 25.763 Atomic orbital electron populations 1.21761 0.95694 1.01477 1.02106 1.21544 0.96163 0.96585 1.01901 1.21395 0.92709 0.96572 1.03748 1.21675 0.97992 0.93737 1.04089 1.20433 0.80462 0.91783 0.76162 1.90725 1.54351 1.46747 1.49872 1.48598 1.05053 1.08489 1.73351 1.22438 0.87277 0.91413 1.00852 1.22435 0.94006 0.94795 1.00888 0.89465 1.21697 0.96527 1.00320 1.01240 1.22282 0.93669 0.94305 1.00591 0.89607 1.21726 1.00561 0.94591 0.98403 1.20685 0.95885 0.87419 0.93665 1.42357 1.66598 1.03125 1.25730 1.19199 1.29314 0.83593 1.04858 0.91258 1.24745 1.01082 0.98101 0.97218 1.69649 1.41720 1.33274 1.13760 0.86253 0.77511 0.85144 0.77216 1.21251 1.21686 1.21275 1.22113 0.92259 0.84047 1.02766 0.92608 0.92649 0.92820 0.92045 0.92013 0.91140 0.91184 0.89144 0.89090 0.90788 0.91244 0.91551 0.92522 0.92403 0.91319 0.91721 0.96303 0.96466 0.78340 0.93504 0.90772 0.91356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 9.91 37.16 0.37 -0.63 16 2 C -0.12 -0.82 5.93 -26.73 -0.16 -0.98 16 3 C -0.11 -0.95 4.50 -26.73 -0.12 -1.07 16 4 C -0.14 -1.15 4.71 -27.88 -0.13 -1.29 16 5 C 0.52 6.82 7.85 -10.99 -0.09 6.73 16 6 O -0.54 -9.41 16.31 5.56 0.09 -9.32 16 7 N -0.62 -7.49 3.33 -170.51 -0.57 -8.05 16 8 C 0.10 0.88 6.16 -2.52 -0.02 0.87 16 9 C -0.10 -0.97 3.09 -88.47 -0.27 -1.24 16 10 H 0.09 0.87 8.05 -51.93 -0.42 0.46 16 11 C -0.14 -1.11 9.31 37.16 0.35 -0.76 16 12 C -0.09 -1.09 2.45 -88.79 -0.22 -1.30 16 13 H 0.09 1.01 8.04 -51.93 -0.42 0.59 16 14 C -0.11 -1.79 4.71 -26.74 -0.13 -1.91 16 15 C 0.15 3.07 6.11 -4.04 -0.02 3.05 16 16 N -0.73 -19.13 5.60 -59.91 -0.34 -19.47 16 17 C -0.24 -6.88 9.99 -15.06 -0.15 -7.04 16 18 H 0.07 1.94 7.83 -52.48 -0.41 1.53 16 19 C -0.02 -0.46 5.50 -17.43 -0.10 -0.56 16 20 N -0.94 -28.84 13.06 55.49 0.72 -28.11 16 21 Si 0.91 22.93 29.55 -169.99 -5.02 17.91 16 22 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 23 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 24 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 25 C 0.11 1.53 5.61 -3.06 -0.02 1.51 16 26 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 27 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 28 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.07 0.73 8.10 -51.93 -0.42 0.30 16 32 H 0.07 0.71 8.10 -51.93 -0.42 0.29 16 33 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16 34 H 0.09 0.63 7.85 -51.93 -0.41 0.22 16 35 H 0.07 0.49 7.48 -51.93 -0.39 0.10 16 36 H 0.07 0.51 7.99 -51.92 -0.41 0.10 16 37 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 38 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 39 H 0.06 0.42 8.08 -51.93 -0.42 0.00 16 40 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 41 H 0.06 1.05 8.06 -51.93 -0.42 0.63 16 42 H 0.02 0.40 7.49 -51.93 -0.39 0.01 16 43 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 44 H 0.38 10.40 7.67 -40.82 -0.31 10.09 16 45 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 46 H 0.07 1.19 7.76 -51.93 -0.40 0.78 16 47 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 LS Contribution 375.36 15.07 5.66 5.66 Total: -1.00 -33.72 375.36 -9.18 -42.91 By element: Atomic # 1 Polarization: 12.14 SS G_CDS: -9.03 Total: 3.11 kcal Atomic # 6 Polarization: -3.92 SS G_CDS: -0.70 Total: -4.63 kcal Atomic # 7 Polarization: -55.46 SS G_CDS: -0.18 Total: -55.64 kcal Atomic # 8 Polarization: -9.41 SS G_CDS: 0.09 Total: -9.32 kcal Atomic # 14 Polarization: 22.93 SS G_CDS: -5.02 Total: 17.91 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -33.72 -9.18 -42.91 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001103892182.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.675 kcal (2) G-P(sol) polarization free energy of solvation -33.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds