Wall clock time and date at job start Tue Mar 31 2020 06:16:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47126 * 2 1 4 4 C 1.53003 * 109.47073 * 179.97438 * 3 2 1 5 5 H 1.09000 * 109.47057 * 305.00158 * 4 3 2 6 6 C 1.53008 * 109.47047 * 64.99756 * 4 3 2 7 7 C 1.50698 * 109.47123 * 184.99583 * 4 3 2 8 8 O 1.21280 * 120.00205 * 325.15512 * 7 4 3 9 9 N 1.34781 * 119.99732 * 145.14898 * 7 4 3 10 10 C 1.48113 * 127.03244 * 184.68372 * 9 7 4 11 11 C 1.54600 * 103.42430 * 219.29017 * 10 9 7 12 12 H 1.08995 * 110.57160 * 81.17302 * 11 10 9 13 13 C 1.53003 * 110.98574 * 204.37749 * 11 10 9 14 14 N 1.46504 * 109.47186 * 288.64948 * 13 11 10 15 15 C 1.36930 * 119.99939 * 180.02562 * 14 13 11 16 16 H 1.08004 * 120.00329 * 0.02562 * 15 14 13 17 17 C 1.38817 * 120.00024 * 180.02562 * 15 14 13 18 18 N 1.31617 * 120.00389 * 180.02562 * 17 15 14 19 19 Si 1.86803 * 119.99611 * 359.97438 * 17 15 14 20 20 H 1.48498 * 109.46774 * 90.00600 * 19 17 15 21 21 H 1.48503 * 109.46882 * 209.99797 * 19 17 15 22 22 H 1.48491 * 109.47382 * 330.00102 * 19 17 15 23 23 C 1.54618 * 102.91192 * 322.86910 * 11 10 9 24 24 H 1.08992 * 110.32735 * 262.80966 * 23 11 10 25 25 C 1.52995 * 110.41135 * 140.63328 * 23 11 10 26 26 C 1.47485 * 127.03387 * 5.01184 * 9 7 4 27 27 H 1.08995 * 109.47005 * 300.00323 * 1 2 3 28 28 H 1.08994 * 109.47271 * 180.02562 * 1 2 3 29 29 H 1.09008 * 109.46826 * 60.00223 * 1 2 3 30 30 H 1.08999 * 109.46819 * 119.99969 * 2 1 3 31 31 H 1.09003 * 109.47239 * 239.99461 * 2 1 3 32 32 H 1.08997 * 109.47085 * 299.99196 * 3 2 1 33 33 H 1.08995 * 109.47442 * 59.99945 * 3 2 1 34 34 H 1.09001 * 109.46670 * 53.89590 * 6 4 3 35 35 H 1.08996 * 109.47401 * 173.89203 * 6 4 3 36 36 H 1.08998 * 109.47226 * 293.89292 * 6 4 3 37 37 H 1.09001 * 110.66455 * 337.77434 * 10 9 7 38 38 H 1.09007 * 110.66060 * 100.89276 * 10 9 7 39 39 H 1.08994 * 109.47338 * 48.65334 * 13 11 10 40 40 H 1.09009 * 109.46775 * 168.65676 * 13 11 10 41 41 H 0.97000 * 119.99460 * 0.02562 * 14 13 11 42 42 H 0.96996 * 120.00119 * 180.02562 * 18 17 15 43 43 H 1.09005 * 109.47374 * 302.87717 * 25 23 11 44 44 H 1.09006 * 109.47350 * 62.87780 * 25 23 11 45 45 H 1.09003 * 109.47061 * 182.87367 * 25 23 11 46 46 H 1.09004 * 109.91010 * 273.86917 * 26 9 7 47 47 H 1.08999 * 109.91899 * 35.14767 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9330 0.8531 0.8427 6 6 4.0806 0.8326 -1.3064 7 6 4.0723 2.8579 0.1244 8 8 3.4620 3.7659 -0.3990 9 7 5.1998 3.1147 0.8168 10 6 5.7784 4.4445 1.1178 11 6 7.2992 4.2196 0.9543 12 1 7.5819 4.2640 -0.0974 13 6 8.0949 5.2399 1.7708 14 7 7.9816 6.5603 1.1464 15 6 8.6157 7.6381 1.7043 16 1 9.1997 7.5148 2.6044 17 6 8.5079 8.8894 1.1130 18 7 9.1178 9.9254 1.6489 19 14 7.4984 9.1026 -0.4442 20 1 6.0948 9.4268 -0.0836 21 1 8.0685 10.2075 -1.2563 22 1 7.5293 7.8434 -1.2305 23 6 7.4998 2.7929 1.5155 24 1 7.8307 2.8372 2.5530 25 6 8.5144 2.0236 0.6673 26 6 6.1133 2.1288 1.4241 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 -0.8901 30 1 1.8933 -0.5138 0.8900 31 1 1.8934 -0.5139 -0.8899 32 1 1.6768 1.9563 -0.8900 33 1 1.6767 1.9564 0.8899 34 1 3.6311 1.3549 -2.1510 35 1 5.1651 0.9308 -1.3540 36 1 3.8093 -0.2224 -1.3455 37 1 5.4218 5.1892 0.4062 38 1 5.5436 4.7438 2.1394 39 1 7.6983 5.2823 2.7851 40 1 9.1430 4.9418 1.8026 41 1 7.4574 6.6710 0.3378 42 1 9.0421 10.7997 1.2359 43 1 8.1766 1.9978 -0.3688 44 1 9.4835 2.5196 0.7212 45 1 8.6060 1.0053 1.0450 46 1 5.7626 1.8629 2.4213 47 1 6.1686 1.2386 0.7975 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001105961192.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:18 Heat of formation + Delta-G solvation = -49.087115 kcal Electronic energy + Delta-G solvation = -22949.474744 eV Core-core repulsion = 19745.512052 eV Total energy + Delta-G solvation = -3203.962692 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.34576 -38.30538 -36.08720 -34.83828 -32.95144 -32.13501 -31.52507 -29.51297 -26.96181 -26.56027 -25.99194 -23.82175 -22.68545 -21.23889 -20.89689 -20.06199 -18.96068 -17.64133 -17.06724 -16.05461 -15.60657 -15.56314 -14.63079 -14.42493 -14.30807 -14.23484 -13.72567 -13.56463 -13.37247 -13.20534 -12.80137 -12.64901 -12.52494 -12.45271 -12.20514 -12.11050 -12.01655 -11.52591 -11.50333 -11.39557 -11.24874 -11.09042 -10.91856 -10.81161 -10.62126 -10.51068 -10.37577 -10.09522 -9.64983 -9.57166 -8.89107 -8.64912 -7.22884 -5.75803 -3.11549 2.62309 2.94048 3.41314 3.45368 3.49171 4.26081 4.45903 4.50292 4.61295 4.61872 4.69019 4.79069 4.89638 4.94123 5.01181 5.16977 5.24228 5.36105 5.38660 5.40430 5.43958 5.48785 5.54164 5.55078 5.58846 5.63899 5.67228 5.71745 5.74118 5.81302 5.86987 5.93561 6.01017 6.02749 6.07264 6.10412 6.12021 6.20087 6.40082 6.61780 6.72836 7.57095 7.99454 8.17553 8.43127 9.21893 9.94606 10.13852 11.42489 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.021295 B = 0.003781 C = 0.003397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1314.559706 B = 7402.951518 C = 8240.061693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.124 4.124 3 C -0.104 4.104 4 C -0.105 4.105 5 H 0.087 0.913 6 C -0.141 4.141 7 C 0.533 3.467 8 O -0.541 6.541 9 N -0.622 5.622 10 C 0.110 3.890 11 C -0.107 4.107 12 H 0.082 0.918 13 C 0.170 3.830 14 N -0.757 5.757 15 C -0.245 4.245 16 H 0.090 0.910 17 C 0.006 3.994 18 N -0.934 5.934 19 Si 0.882 3.118 20 H -0.283 1.283 21 H -0.290 1.290 22 H -0.277 1.277 23 C -0.100 4.100 24 H 0.090 0.910 25 C -0.142 4.142 26 C 0.105 3.895 27 H 0.054 0.946 28 H 0.053 0.947 29 H 0.055 0.945 30 H 0.061 0.939 31 H 0.065 0.935 32 H 0.074 0.926 33 H 0.064 0.936 34 H 0.064 0.936 35 H 0.058 0.942 36 H 0.068 0.932 37 H 0.083 0.917 38 H 0.077 0.923 39 H 0.030 0.970 40 H 0.032 0.968 41 H 0.361 0.639 42 H 0.259 0.741 43 H 0.054 0.946 44 H 0.064 0.936 45 H 0.055 0.945 46 H 0.067 0.933 47 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.756 -25.314 -2.225 27.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.161 4.161 3 C -0.142 4.142 4 C -0.126 4.126 5 H 0.106 0.894 6 C -0.198 4.198 7 C 0.322 3.678 8 O -0.417 6.417 9 N -0.356 5.356 10 C -0.012 4.012 11 C -0.127 4.127 12 H 0.100 0.900 13 C 0.042 3.958 14 N -0.402 5.402 15 C -0.375 4.375 16 H 0.108 0.892 17 C -0.190 4.190 18 N -0.582 5.582 19 Si 0.713 3.287 20 H -0.209 1.209 21 H -0.217 1.217 22 H -0.204 1.204 23 C -0.119 4.119 24 H 0.108 0.892 25 C -0.199 4.199 26 C -0.019 4.019 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.074 0.926 30 H 0.079 0.921 31 H 0.083 0.917 32 H 0.093 0.907 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.077 0.923 36 H 0.087 0.913 37 H 0.101 0.899 38 H 0.095 0.905 39 H 0.048 0.952 40 H 0.049 0.951 41 H 0.194 0.806 42 H 0.070 0.930 43 H 0.073 0.927 44 H 0.083 0.917 45 H 0.074 0.926 46 H 0.085 0.915 47 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -11.043 -24.706 -2.400 27.168 hybrid contribution -0.553 0.348 -1.006 1.199 sum -11.596 -24.358 -3.406 27.192 Atomic orbital electron populations 1.21767 0.95738 1.01487 1.02049 1.21571 0.96014 0.96476 1.02065 1.21496 0.92225 0.96984 1.03469 1.21295 0.97601 0.93205 1.00543 0.89426 1.21753 1.01239 1.00958 0.95864 1.20336 0.79119 0.91170 0.77175 1.90711 1.56956 1.47449 1.46603 1.48922 1.23740 1.09054 1.53910 1.22520 0.92259 0.84711 1.01714 1.22566 0.94553 0.94239 1.01293 0.89981 1.20605 0.96618 0.84129 0.94450 1.42734 1.61969 1.04752 1.30770 1.19037 1.24311 0.85912 1.08205 0.89183 1.24663 1.00104 0.95569 0.98688 1.69698 1.47420 0.99621 1.41452 0.86581 0.80566 0.77251 0.84348 1.20927 1.21680 1.20350 1.22078 0.93843 0.94812 1.01174 0.89198 1.21837 0.99205 0.99457 0.99394 1.22227 0.89465 0.92174 0.97990 0.92712 0.92792 0.92625 0.92051 0.91673 0.90689 0.91722 0.91737 0.92319 0.91292 0.89855 0.90473 0.95217 0.95063 0.80620 0.93048 0.92735 0.91743 0.92629 0.91518 0.90836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 9.91 37.16 0.37 -0.67 16 2 C -0.12 -0.87 5.69 -26.73 -0.15 -1.03 16 3 C -0.10 -0.99 4.26 -26.73 -0.11 -1.10 16 4 C -0.11 -1.03 2.20 -91.77 -0.20 -1.23 16 5 H 0.09 0.70 7.21 -51.93 -0.37 0.32 16 6 C -0.14 -1.19 8.78 37.16 0.33 -0.86 16 7 C 0.53 7.58 6.88 -10.98 -0.08 7.50 16 8 O -0.54 -10.02 16.56 5.56 0.09 -9.93 16 9 N -0.62 -8.32 3.29 -169.98 -0.56 -8.88 16 10 C 0.11 1.72 6.46 -2.31 -0.01 1.71 16 11 C -0.11 -1.58 2.60 -88.93 -0.23 -1.82 16 12 H 0.08 1.31 7.86 -51.93 -0.41 0.90 16 13 C 0.17 3.14 5.58 -4.04 -0.02 3.12 16 14 N -0.76 -18.03 5.33 -59.90 -0.32 -18.35 16 15 C -0.24 -6.98 10.47 -15.06 -0.16 -7.14 16 16 H 0.09 2.72 8.06 -52.48 -0.42 2.30 16 17 C 0.01 0.17 5.50 -17.43 -0.10 0.07 16 18 N -0.93 -29.69 13.97 55.49 0.78 -28.91 16 19 Si 0.88 22.80 27.74 -169.99 -4.71 18.09 16 20 H -0.28 -7.32 7.11 56.52 0.40 -6.92 16 21 H -0.29 -7.55 7.11 56.52 0.40 -7.15 16 22 H -0.28 -6.82 6.52 56.52 0.37 -6.45 16 23 C -0.10 -1.08 3.17 -89.25 -0.28 -1.36 16 24 H 0.09 0.91 7.85 -51.93 -0.41 0.51 16 25 C -0.14 -1.34 8.90 37.15 0.33 -1.01 16 26 C 0.10 1.03 5.94 -2.98 -0.02 1.01 16 27 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.05 0.39 8.14 -51.92 -0.42 -0.04 16 30 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.06 0.42 6.71 -51.93 -0.35 0.07 16 32 H 0.07 0.82 8.02 -51.93 -0.42 0.41 16 33 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.06 0.50 8.12 -51.93 -0.42 0.07 16 36 H 0.07 0.43 6.87 -51.93 -0.36 0.08 16 37 H 0.08 1.53 7.82 -51.93 -0.41 1.12 16 38 H 0.08 1.21 7.95 -51.93 -0.41 0.79 16 39 H 0.03 0.55 8.00 -51.93 -0.42 0.14 16 40 H 0.03 0.58 8.14 -51.92 -0.42 0.16 16 41 H 0.36 8.59 5.53 -40.82 -0.23 8.36 16 42 H 0.26 7.86 8.31 -40.82 -0.34 7.52 16 43 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 45 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 46 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 47 H 0.07 0.59 7.20 -51.93 -0.37 0.22 16 LS Contribution 369.02 15.07 5.56 5.56 Total: -1.00 -33.78 369.02 -8.31 -42.09 By element: Atomic # 1 Polarization: 11.95 SS G_CDS: -8.81 Total: 3.14 kcal Atomic # 6 Polarization: -2.47 SS G_CDS: -0.34 Total: -2.81 kcal Atomic # 7 Polarization: -56.04 SS G_CDS: -0.10 Total: -56.14 kcal Atomic # 8 Polarization: -10.02 SS G_CDS: 0.09 Total: -9.93 kcal Atomic # 14 Polarization: 22.80 SS G_CDS: -4.71 Total: 18.09 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -33.78 -8.31 -42.09 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001105961192.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.997 kcal (2) G-P(sol) polarization free energy of solvation -33.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds