Wall clock time and date at job start Tue Mar 31 2020 06:16:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53004 * 109.47104 * 2 1 4 4 C 1.53000 * 109.46827 * 179.97438 * 3 2 1 5 5 H 1.09000 * 109.46952 * 55.00542 * 4 3 2 6 6 C 1.52993 * 109.47301 * 295.00196 * 4 3 2 7 7 C 1.50701 * 109.46782 * 174.99774 * 4 3 2 8 8 O 1.21282 * 119.99654 * 34.77902 * 7 4 3 9 9 N 1.34773 * 120.00158 * 214.77544 * 7 4 3 10 10 C 1.47423 * 125.64807 * 174.88934 * 9 7 4 11 11 C 1.54911 * 104.83194 * 204.09529 * 10 9 7 12 12 H 1.08998 * 111.00563 * 81.06790 * 11 10 9 13 13 C 1.53002 * 111.00276 * 204.87892 * 11 10 9 14 14 N 1.46498 * 109.47184 * 293.54446 * 13 11 10 15 15 C 1.36938 * 119.99889 * 179.97438 * 14 13 11 16 16 H 1.07997 * 120.00085 * 0.02562 * 15 14 13 17 17 C 1.38810 * 119.99976 * 179.97438 * 15 14 13 18 18 N 1.31626 * 120.00022 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 120.00256 * 180.02562 * 17 15 14 20 20 H 1.48504 * 109.46986 * 0.02562 * 19 17 15 21 21 H 1.48502 * 109.47167 * 120.00187 * 19 17 15 22 22 H 1.48496 * 109.47260 * 240.00184 * 19 17 15 23 23 C 1.55152 * 101.58224 * 322.98871 * 11 10 9 24 24 H 1.09002 * 110.72441 * 277.14007 * 23 11 10 25 25 C 1.53006 * 110.72231 * 153.86508 * 23 11 10 26 26 C 1.47026 * 125.65126 * 354.84768 * 9 7 4 27 27 H 1.08997 * 109.46999 * 59.99975 * 1 2 3 28 28 H 1.08997 * 109.46707 * 179.97438 * 1 2 3 29 29 H 1.09006 * 109.46737 * 299.99702 * 1 2 3 30 30 H 1.09001 * 109.47132 * 240.00059 * 2 1 3 31 31 H 1.08999 * 109.47308 * 120.00462 * 2 1 3 32 32 H 1.09001 * 109.47078 * 60.00026 * 3 2 1 33 33 H 1.08997 * 109.47213 * 299.99894 * 3 2 1 34 34 H 1.08995 * 109.47195 * 65.30925 * 6 4 3 35 35 H 1.09005 * 109.47094 * 185.30798 * 6 4 3 36 36 H 1.08999 * 109.47109 * 305.30530 * 6 4 3 37 37 H 1.09003 * 110.36806 * 322.93244 * 10 9 7 38 38 H 1.08999 * 110.36929 * 85.25804 * 10 9 7 39 39 H 1.08997 * 109.47151 * 53.54960 * 13 11 10 40 40 H 1.09000 * 109.47166 * 173.54318 * 13 11 10 41 41 H 0.96998 * 119.99722 * 359.97438 * 14 13 11 42 42 H 0.96998 * 119.99958 * 180.02562 * 18 17 15 43 43 H 1.08999 * 109.46674 * 305.02393 * 25 23 11 44 44 H 1.08999 * 109.46954 * 65.02394 * 25 23 11 45 45 H 1.08997 * 109.47157 * 185.02604 * 25 23 11 46 46 H 1.09000 * 109.88125 * 298.39891 * 26 9 7 47 47 H 1.09008 * 109.87432 * 59.55648 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4425 0.0006 5 1 3.9337 0.8529 -0.8410 6 6 4.0795 0.8330 1.3082 7 6 4.0724 2.8579 -0.1232 8 8 3.4609 3.7662 0.3983 9 7 5.2012 3.1143 -0.8135 10 6 5.7458 4.4533 -1.1031 11 6 6.6172 4.2617 -2.3694 12 1 6.0028 4.2588 -3.2698 13 6 7.7044 5.3348 -2.4545 14 7 7.0825 6.6445 -2.6647 15 6 7.8637 7.7640 -2.7722 16 1 8.9383 7.6814 -2.7024 17 6 7.2745 9.0049 -2.9718 18 7 5.9649 9.1055 -3.0574 19 14 8.3401 10.5320 -3.1192 20 1 9.7699 10.1523 -2.9900 21 1 8.1147 11.1672 -4.4425 22 1 7.9829 11.4906 -2.0428 23 6 7.2352 2.8618 -2.1134 24 1 8.1091 2.9385 -1.4664 25 6 7.5960 2.1794 -3.4344 26 6 6.0940 2.1050 -1.4017 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8901 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 1.6767 1.9564 0.8900 33 1 1.6768 1.9564 -0.8900 34 1 3.7958 -0.2184 1.3538 35 1 5.1654 0.9185 1.3501 36 1 3.6403 1.3648 2.1523 37 1 4.9372 5.1568 -1.3019 38 1 6.3573 4.8023 -0.2710 39 1 8.2750 5.3483 -1.5259 40 1 8.3712 5.1113 -3.2873 41 1 6.1175 6.7186 -2.7277 42 1 5.5532 9.9726 -3.1973 43 1 6.7158 2.1423 -4.0763 44 1 8.3848 2.7440 -3.9315 45 1 7.9442 1.1657 -3.2365 46 1 6.5035 1.4696 -0.6165 47 1 5.5446 1.4994 -2.1227 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001105961193.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:22 Heat of formation + Delta-G solvation = -54.525342 kcal Electronic energy + Delta-G solvation = -22824.934725 eV Core-core repulsion = 19620.736214 eV Total energy + Delta-G solvation = -3204.198511 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.24594 -38.16908 -35.99375 -34.64916 -32.93488 -32.05225 -31.36252 -29.08348 -26.88413 -26.43458 -25.73103 -23.81676 -22.80526 -21.22005 -20.81391 -19.92245 -18.85589 -17.22792 -16.89274 -16.18689 -15.56236 -15.06296 -14.77515 -14.47598 -14.21444 -13.99201 -13.66458 -13.46930 -13.15047 -13.06516 -12.83841 -12.66167 -12.49807 -12.26878 -12.11105 -12.09783 -11.92212 -11.42354 -11.32214 -11.16467 -11.08800 -10.98398 -10.86209 -10.72835 -10.57772 -10.44454 -10.33955 -9.97158 -9.65588 -9.52651 -8.86688 -8.48269 -6.90986 -5.74083 -3.03530 2.74882 3.08517 3.45127 3.50199 3.52914 4.36197 4.54081 4.55137 4.59167 4.70485 4.80196 4.87396 5.00079 5.03647 5.08727 5.26270 5.36597 5.42238 5.46118 5.49227 5.54022 5.57088 5.60029 5.62312 5.66936 5.72871 5.76180 5.83096 5.88258 5.94592 6.01113 6.05905 6.11073 6.15735 6.18853 6.21456 6.32923 6.41219 6.51265 6.70652 6.84595 7.67057 7.71932 8.30636 8.44044 9.55312 10.12410 10.46700 11.48634 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.021846 B = 0.003431 C = 0.003131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1281.391815 B = 8159.353649 C = 8941.854531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.124 4.124 3 C -0.104 4.104 4 C -0.106 4.106 5 H 0.087 0.913 6 C -0.140 4.140 7 C 0.528 3.472 8 O -0.538 6.538 9 N -0.619 5.619 10 C 0.115 3.885 11 C -0.101 4.101 12 H 0.084 0.916 13 C 0.166 3.834 14 N -0.733 5.733 15 C -0.240 4.240 16 H 0.071 0.929 17 C -0.014 4.014 18 N -0.931 5.931 19 Si 0.907 3.093 20 H -0.280 1.280 21 H -0.292 1.292 22 H -0.291 1.291 23 C -0.099 4.099 24 H 0.087 0.913 25 C -0.139 4.139 26 C 0.106 3.894 27 H 0.054 0.946 28 H 0.052 0.948 29 H 0.055 0.945 30 H 0.060 0.940 31 H 0.064 0.936 32 H 0.074 0.926 33 H 0.065 0.935 34 H 0.067 0.933 35 H 0.057 0.943 36 H 0.063 0.937 37 H 0.082 0.918 38 H 0.070 0.930 39 H 0.021 0.979 40 H 0.024 0.976 41 H 0.384 0.616 42 H 0.255 0.745 43 H 0.056 0.944 44 H 0.064 0.936 45 H 0.054 0.946 46 H 0.065 0.935 47 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.640 -23.176 4.382 23.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.161 4.161 3 C -0.142 4.142 4 C -0.127 4.127 5 H 0.105 0.895 6 C -0.197 4.197 7 C 0.317 3.683 8 O -0.415 6.415 9 N -0.353 5.353 10 C -0.006 4.006 11 C -0.120 4.120 12 H 0.103 0.897 13 C 0.038 3.962 14 N -0.377 5.377 15 C -0.372 4.372 16 H 0.089 0.911 17 C -0.210 4.210 18 N -0.580 5.580 19 Si 0.738 3.262 20 H -0.206 1.206 21 H -0.219 1.219 22 H -0.219 1.219 23 C -0.118 4.118 24 H 0.105 0.895 25 C -0.197 4.197 26 C -0.017 4.017 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.074 0.926 30 H 0.079 0.921 31 H 0.083 0.917 32 H 0.093 0.907 33 H 0.083 0.917 34 H 0.086 0.914 35 H 0.076 0.924 36 H 0.082 0.918 37 H 0.100 0.900 38 H 0.088 0.912 39 H 0.039 0.961 40 H 0.042 0.958 41 H 0.218 0.782 42 H 0.065 0.935 43 H 0.075 0.925 44 H 0.083 0.917 45 H 0.073 0.927 46 H 0.083 0.917 47 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -3.899 -22.589 4.709 23.402 hybrid contribution 0.315 0.956 -0.192 1.025 sum -3.584 -21.633 4.517 22.389 Atomic orbital electron populations 1.21769 0.95762 1.01425 1.02083 1.21573 0.95998 0.96541 1.01996 1.21495 0.92283 0.96900 1.03534 1.21295 0.97606 0.93374 1.00448 0.89468 1.21736 1.01140 1.00918 0.95919 1.20335 0.79202 0.91142 0.77659 1.90719 1.56951 1.47347 1.46459 1.48632 1.23728 1.08767 1.54193 1.22306 0.97693 0.83632 0.97005 1.22660 0.97545 0.94182 0.97624 0.89739 1.20575 0.92773 0.85011 0.97837 1.42373 1.06532 1.01189 1.87643 1.19248 0.90501 0.85764 1.41639 0.91126 1.24758 0.95699 0.97673 1.02849 1.69676 1.08046 1.23642 1.56601 0.86122 0.79331 0.83518 0.77236 1.20575 1.21888 1.21860 1.22229 0.97260 0.94977 0.97364 0.89505 1.21740 1.02050 0.99870 0.96029 1.22132 0.91240 0.91386 0.96969 0.92676 0.92849 0.92627 0.92084 0.91727 0.90695 0.91651 0.91362 0.92416 0.91774 0.90003 0.91201 0.96147 0.95822 0.78213 0.93526 0.92452 0.91651 0.92697 0.91708 0.91502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 9.91 37.16 0.37 -0.77 16 2 C -0.12 -0.96 5.69 -26.73 -0.15 -1.11 16 3 C -0.10 -1.09 4.26 -26.73 -0.11 -1.20 16 4 C -0.11 -1.13 2.35 -91.77 -0.22 -1.34 16 5 H 0.09 0.77 6.91 -51.93 -0.36 0.42 16 6 C -0.14 -1.25 8.80 37.15 0.33 -0.92 16 7 C 0.53 8.07 6.84 -10.99 -0.08 7.99 16 8 O -0.54 -10.60 16.67 5.56 0.09 -10.51 16 9 N -0.62 -9.01 3.33 -170.51 -0.57 -9.58 16 10 C 0.12 1.99 6.06 -2.53 -0.02 1.98 16 11 C -0.10 -1.59 2.55 -88.47 -0.23 -1.81 16 12 H 0.08 1.40 8.04 -51.93 -0.42 0.98 16 13 C 0.17 3.25 5.71 -4.04 -0.02 3.22 16 14 N -0.73 -18.61 5.45 -59.91 -0.33 -18.94 16 15 C -0.24 -6.78 9.99 -15.06 -0.15 -6.93 16 16 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 17 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 18 N -0.93 -28.70 13.06 55.49 0.72 -27.97 16 19 Si 0.91 22.69 29.55 -169.99 -5.02 17.67 16 20 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 21 H -0.29 -7.32 7.11 56.52 0.40 -6.91 16 22 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 23 C -0.10 -1.15 3.02 -88.79 -0.27 -1.42 16 24 H 0.09 0.98 8.04 -51.93 -0.42 0.57 16 25 C -0.14 -1.36 9.13 37.16 0.34 -1.02 16 26 C 0.11 1.14 5.80 -3.06 -0.02 1.13 16 27 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.06 0.45 6.68 -51.93 -0.35 0.10 16 32 H 0.07 0.88 8.02 -51.93 -0.42 0.47 16 33 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.07 0.46 6.83 -51.93 -0.35 0.11 16 35 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.08 1.66 8.09 -51.93 -0.42 1.23 16 38 H 0.07 1.28 8.00 -51.93 -0.42 0.86 16 39 H 0.02 0.41 8.10 -51.93 -0.42 -0.01 16 40 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.38 10.37 7.53 -40.82 -0.31 10.06 16 42 H 0.25 7.59 8.31 -40.82 -0.34 7.25 16 43 H 0.06 0.56 8.13 -51.93 -0.42 0.14 16 44 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 45 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 46 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 47 H 0.07 0.62 7.31 -51.92 -0.38 0.24 16 LS Contribution 372.37 15.07 5.61 5.61 Total: -1.00 -33.02 372.37 -8.68 -41.71 By element: Atomic # 1 Polarization: 13.60 SS G_CDS: -8.87 Total: 4.72 kcal Atomic # 6 Polarization: -2.40 SS G_CDS: -0.32 Total: -2.71 kcal Atomic # 7 Polarization: -56.32 SS G_CDS: -0.17 Total: -56.49 kcal Atomic # 8 Polarization: -10.60 SS G_CDS: 0.09 Total: -10.51 kcal Atomic # 14 Polarization: 22.69 SS G_CDS: -5.02 Total: 17.67 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -33.02 -8.68 -41.71 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001105961193.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.820 kcal (2) G-P(sol) polarization free energy of solvation -33.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.705 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds