Wall clock time and date at job start Tue Mar 31 2020 05:55:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52993 * 109.47319 * 2 1 4 4 C 1.53005 * 109.46913 * 120.00131 * 2 1 3 5 5 C 1.50694 * 109.46887 * 174.99905 * 4 2 1 6 6 O 1.21280 * 120.00578 * 0.02562 * 5 4 2 7 7 N 1.34775 * 119.99788 * 179.97438 * 5 4 2 8 8 C 1.46508 * 120.00083 * 179.97438 * 7 5 4 9 9 C 1.52995 * 109.47100 * 176.55067 * 8 7 5 10 10 N 1.46507 * 109.47025 * 54.64213 * 9 8 7 11 11 C 1.36933 * 120.00158 * 62.76893 * 10 9 8 12 12 H 1.08001 * 119.99777 * 354.57439 * 11 10 9 13 13 C 1.38811 * 120.00296 * 174.57769 * 11 10 9 14 14 N 1.31618 * 119.99669 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 120.00215 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.46768 * 359.97438 * 15 13 11 17 17 H 1.48502 * 109.47206 * 119.99838 * 15 13 11 18 18 H 1.48498 * 109.47072 * 239.99711 * 15 13 11 19 19 C 1.52998 * 109.47055 * 174.63671 * 9 8 7 20 20 C 1.53005 * 109.47284 * 180.02562 * 19 9 8 21 21 C 1.53002 * 109.46897 * 300.00057 * 20 19 9 22 22 C 1.53003 * 109.47040 * 60.00390 * 21 20 19 23 23 C 1.52999 * 109.47571 * 294.64280 * 9 8 7 24 24 H 1.08999 * 109.47172 * 300.00406 * 1 2 3 25 25 H 1.09003 * 109.46798 * 59.99887 * 1 2 3 26 26 H 1.08997 * 109.47352 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47172 * 239.99594 * 2 1 3 28 28 H 1.09000 * 109.47346 * 60.00245 * 3 2 1 29 29 H 1.08998 * 109.47322 * 179.97438 * 3 2 1 30 30 H 1.09003 * 109.47278 * 299.99820 * 3 2 1 31 31 H 1.08997 * 109.47037 * 54.99832 * 4 2 1 32 32 H 1.09003 * 109.46740 * 294.99699 * 4 2 1 33 33 H 0.97003 * 120.00266 * 0.02562 * 7 5 4 34 34 H 1.09000 * 109.46747 * 56.55720 * 8 7 5 35 35 H 1.08994 * 109.47496 * 296.55550 * 8 7 5 36 36 H 0.97004 * 119.99699 * 243.04530 * 10 9 8 37 37 H 0.97002 * 120.00329 * 180.02562 * 14 13 11 38 38 H 1.08995 * 109.47368 * 300.00645 * 19 9 8 39 39 H 1.09003 * 109.47074 * 60.00579 * 19 9 8 40 40 H 1.08998 * 109.47142 * 180.02562 * 20 19 9 41 41 H 1.08995 * 109.46935 * 59.99800 * 20 19 9 42 42 H 1.08996 * 109.47766 * 300.00305 * 21 20 19 43 43 H 1.09003 * 109.47165 * 180.02562 * 21 20 19 44 44 H 1.09004 * 109.47132 * 179.97438 * 22 21 20 45 45 H 1.08995 * 109.47785 * 59.99649 * 22 21 20 46 46 H 1.09003 * 109.46897 * 299.99628 * 23 9 8 47 47 H 1.08998 * 109.47225 * 59.99917 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5418 -0.8295 1.1889 6 8 4.1451 -0.3741 0.2404 7 7 4.2148 -1.4314 2.1895 8 6 5.6749 -1.5371 2.1306 9 6 6.1920 -2.1803 3.4189 10 7 5.5149 -3.4621 3.6306 11 6 5.6713 -4.4769 2.7247 12 1 6.2212 -4.3053 1.8111 13 6 5.1230 -5.7262 2.9804 14 7 4.4532 -5.9355 4.0939 15 14 5.3368 -7.1108 1.7448 16 1 6.1242 -6.6216 0.5846 17 1 6.0526 -8.2419 2.3878 18 1 4.0033 -7.5694 1.2795 19 6 7.6998 -2.4130 3.3031 20 6 8.2169 -3.0568 4.5912 21 6 7.9334 -2.1292 5.7744 22 6 6.4256 -1.8965 5.8902 23 6 5.9086 -1.2523 4.6018 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8934 -0.5139 -0.8899 28 1 1.6768 1.9563 0.8900 29 1 3.1300 1.4424 0.0005 30 1 1.6768 1.9563 -0.8900 31 1 1.6053 -1.7198 1.2952 32 1 1.7516 -0.1583 2.1370 33 1 3.7325 -1.7953 2.9484 34 1 6.1071 -0.5423 2.0224 35 1 5.9606 -2.1521 1.2773 36 1 4.9527 -3.5905 4.4106 37 1 4.0703 -6.8086 4.2729 38 1 7.9017 -3.0741 2.4604 39 1 8.2036 -1.4593 3.1456 40 1 9.2911 -3.2222 4.5088 41 1 7.7130 -4.0105 4.7483 42 1 8.4372 -1.1754 5.6173 43 1 8.3022 -2.5876 6.6920 44 1 6.2236 -1.2360 6.7335 45 1 5.9218 -2.8502 6.0474 46 1 6.4124 -0.2986 4.4443 47 1 4.8344 -1.0865 4.6843 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001115386127.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:35 Heat of formation + Delta-G solvation = -63.338008 kcal Electronic energy + Delta-G solvation = -23814.271875 eV Core-core repulsion = 20609.691218 eV Total energy + Delta-G solvation = -3204.580657 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.62481 -38.53055 -35.51772 -34.29859 -33.23550 -31.21089 -30.23115 -28.87542 -27.89823 -27.01664 -24.88926 -23.78952 -22.13068 -20.86145 -20.16210 -19.51035 -18.30768 -17.17358 -16.67745 -15.56112 -15.35229 -15.00448 -14.42638 -14.26064 -13.98093 -13.73846 -13.66507 -13.53058 -13.03570 -12.78986 -12.41152 -12.21144 -11.97863 -11.81808 -11.74913 -11.65340 -11.51775 -11.11448 -10.98087 -10.89495 -10.77724 -10.71687 -10.57917 -10.53802 -10.14524 -10.03773 -9.79773 -9.62807 -9.33054 -9.22224 -8.87780 -8.34970 -7.01046 -5.81381 -3.09888 3.15472 3.40258 3.48504 3.48877 3.80174 4.56169 4.89283 5.01587 5.09016 5.20902 5.27197 5.29642 5.49625 5.57047 5.59261 5.62426 5.70134 5.74391 5.75403 5.78274 5.84142 5.93966 5.98865 6.05263 6.07016 6.12597 6.17562 6.18027 6.23004 6.32598 6.45419 6.46061 6.51608 6.55531 6.60864 6.80601 6.82715 6.83956 7.00245 7.15151 7.21130 7.71510 8.14334 8.36930 8.79219 9.49537 10.02641 10.39241 11.40724 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.012739 B = 0.005898 C = 0.004534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2197.489680 B = 4745.960545 C = 6174.186639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.080 4.080 3 C -0.151 4.151 4 C -0.138 4.138 5 C 0.508 3.492 6 O -0.557 6.557 7 N -0.702 5.702 8 C 0.116 3.884 9 C 0.190 3.810 10 N -0.709 5.709 11 C -0.227 4.227 12 H 0.069 0.931 13 C -0.009 4.009 14 N -0.932 5.932 15 Si 0.899 3.101 16 H -0.281 1.281 17 H -0.293 1.293 18 H -0.294 1.294 19 C -0.114 4.114 20 C -0.109 4.109 21 C -0.112 4.112 22 C -0.115 4.115 23 C -0.113 4.113 24 H 0.053 0.947 25 H 0.054 0.946 26 H 0.054 0.946 27 H 0.076 0.924 28 H 0.044 0.956 29 H 0.076 0.924 30 H 0.047 0.953 31 H 0.092 0.908 32 H 0.087 0.913 33 H 0.402 0.598 34 H 0.051 0.949 35 H 0.061 0.939 36 H 0.384 0.616 37 H 0.253 0.747 38 H 0.063 0.937 39 H 0.043 0.957 40 H 0.043 0.957 41 H 0.083 0.917 42 H 0.048 0.952 43 H 0.051 0.949 44 H 0.048 0.952 45 H 0.074 0.926 46 H 0.058 0.942 47 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.128 11.763 0.282 11.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.099 4.099 3 C -0.208 4.208 4 C -0.178 4.178 5 C 0.294 3.706 6 O -0.437 6.437 7 N -0.352 5.352 8 C -0.011 4.011 9 C 0.099 3.901 10 N -0.351 5.351 11 C -0.358 4.358 12 H 0.087 0.913 13 C -0.205 4.205 14 N -0.580 5.580 15 Si 0.730 3.270 16 H -0.207 1.207 17 H -0.220 1.220 18 H -0.221 1.221 19 C -0.154 4.154 20 C -0.147 4.147 21 C -0.150 4.150 22 C -0.153 4.153 23 C -0.151 4.151 24 H 0.072 0.928 25 H 0.073 0.927 26 H 0.073 0.927 27 H 0.094 0.906 28 H 0.064 0.936 29 H 0.094 0.906 30 H 0.066 0.934 31 H 0.110 0.890 32 H 0.105 0.895 33 H 0.238 0.762 34 H 0.069 0.931 35 H 0.080 0.920 36 H 0.219 0.781 37 H 0.063 0.937 38 H 0.082 0.918 39 H 0.062 0.938 40 H 0.062 0.938 41 H 0.102 0.898 42 H 0.067 0.933 43 H 0.069 0.931 44 H 0.067 0.933 45 H 0.093 0.907 46 H 0.076 0.924 47 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -1.634 11.950 -0.500 12.071 hybrid contribution -0.325 -1.240 -0.063 1.283 sum -1.960 10.710 -0.563 10.903 Atomic orbital electron populations 1.21866 0.95357 1.01681 1.01573 1.20829 0.94665 0.96767 0.97595 1.21945 1.03326 0.95079 1.00485 1.21749 0.92953 1.02882 1.00226 1.20574 0.89858 0.77824 0.82355 1.90605 1.70523 1.49047 1.33483 1.45834 1.08257 1.57777 1.23346 1.21828 0.79679 0.99042 1.00536 1.19823 0.91948 0.87339 0.91037 1.42447 1.55796 1.08694 1.28206 1.19119 1.28466 0.89412 0.98825 0.91312 1.24658 1.01204 0.97408 0.97247 1.69652 1.40803 1.22697 1.24867 0.86239 0.77220 0.82858 0.80634 1.20663 1.21996 1.22089 1.21788 0.96193 0.99081 0.98362 1.21373 0.98936 1.00425 0.93962 1.21469 0.96126 0.99033 0.98348 1.21482 0.96185 1.01294 0.96339 1.21688 1.00275 0.97948 0.95164 0.92804 0.92714 0.92669 0.90555 0.93641 0.90558 0.93372 0.88978 0.89464 0.76219 0.93103 0.92021 0.78091 0.93685 0.91811 0.93787 0.93819 0.89821 0.93274 0.93061 0.93339 0.90714 0.92354 0.92470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 9.19 37.16 0.34 -1.15 16 2 C -0.08 -1.00 2.57 -90.62 -0.23 -1.24 16 3 C -0.15 -1.89 8.93 37.15 0.33 -1.55 16 4 C -0.14 -1.83 5.17 -27.88 -0.14 -1.97 16 5 C 0.51 8.61 7.55 -10.99 -0.08 8.53 16 6 O -0.56 -11.05 13.96 5.56 0.08 -10.98 16 7 N -0.70 -11.99 5.09 -60.30 -0.31 -12.29 16 8 C 0.12 2.09 4.37 -4.04 -0.02 2.07 16 9 C 0.19 3.36 0.41 -131.82 -0.05 3.31 16 10 N -0.71 -15.19 3.40 -47.23 -0.16 -15.35 16 11 C -0.23 -5.67 8.70 -15.06 -0.13 -5.80 16 12 H 0.07 1.76 6.77 -52.49 -0.36 1.41 16 13 C -0.01 -0.25 5.50 -17.43 -0.10 -0.34 16 14 N -0.93 -26.13 13.07 55.49 0.73 -25.41 16 15 Si 0.90 21.84 29.55 -169.99 -5.02 16.81 16 16 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 17 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 18 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 19 C -0.11 -1.98 4.52 -26.73 -0.12 -2.10 16 20 C -0.11 -1.85 5.77 -26.73 -0.15 -2.00 16 21 C -0.11 -1.65 5.92 -26.73 -0.16 -1.81 16 22 C -0.12 -1.73 5.75 -26.70 -0.15 -1.89 16 23 C -0.11 -1.71 4.65 -26.71 -0.12 -1.83 16 24 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 25 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.08 1.09 7.96 -51.93 -0.41 0.68 16 28 H 0.04 0.51 8.14 -51.93 -0.42 0.08 16 29 H 0.08 1.15 5.95 -51.93 -0.31 0.84 16 30 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.09 1.19 8.14 -51.93 -0.42 0.76 16 32 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.40 6.66 7.39 -40.82 -0.30 6.36 16 34 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 35 H 0.06 1.28 7.51 -51.93 -0.39 0.89 16 36 H 0.38 8.85 6.64 -40.82 -0.27 8.58 16 37 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 38 H 0.06 1.22 7.23 -51.93 -0.38 0.84 16 39 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 41 H 0.08 1.71 7.60 -51.93 -0.39 1.31 16 42 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 44 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 45 H 0.07 1.31 6.92 -51.93 -0.36 0.95 16 46 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 47 H 0.06 0.84 7.28 -51.93 -0.38 0.46 16 LS Contribution 358.94 15.07 5.41 5.41 Total: -1.00 -28.03 358.94 -8.68 -36.71 By element: Atomic # 1 Polarization: 21.47 SS G_CDS: -8.60 Total: 12.87 kcal Atomic # 6 Polarization: -6.98 SS G_CDS: -0.80 Total: -7.78 kcal Atomic # 7 Polarization: -53.30 SS G_CDS: 0.26 Total: -53.05 kcal Atomic # 8 Polarization: -11.05 SS G_CDS: 0.08 Total: -10.98 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -28.03 -8.68 -36.71 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001115386127.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.633 kcal (2) G-P(sol) polarization free energy of solvation -28.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.705 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds