Wall clock time and date at job start Tue Mar 31 2020 05:55:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.47003 * 2 1 4 4 C 1.53005 * 109.46996 * 180.02562 * 3 2 1 5 5 C 1.50694 * 109.46887 * 180.02562 * 4 3 2 6 6 O 1.21280 * 120.00578 * 0.02562 * 5 4 3 7 7 N 1.34775 * 119.99788 * 179.97438 * 5 4 3 8 8 C 1.46508 * 120.00083 * 179.97438 * 7 5 4 9 9 C 1.52995 * 109.47100 * 176.55067 * 8 7 5 10 10 N 1.46507 * 109.47025 * 54.64213 * 9 8 7 11 11 C 1.36933 * 120.00158 * 62.76893 * 10 9 8 12 12 H 1.08001 * 119.99777 * 354.57439 * 11 10 9 13 13 C 1.38811 * 120.00296 * 174.57769 * 11 10 9 14 14 N 1.31618 * 119.99669 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 120.00215 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.47074 * 89.99620 * 15 13 11 17 17 H 1.48494 * 109.46900 * 209.99771 * 15 13 11 18 18 H 1.48499 * 109.46828 * 329.99536 * 15 13 11 19 19 C 1.52998 * 109.47055 * 174.63671 * 9 8 7 20 20 C 1.53005 * 109.47284 * 180.02562 * 19 9 8 21 21 C 1.53002 * 109.46897 * 300.00057 * 20 19 9 22 22 C 1.53003 * 109.47040 * 60.00390 * 21 20 19 23 23 C 1.52999 * 109.47571 * 294.64280 * 9 8 7 24 24 H 1.09006 * 109.46658 * 299.99468 * 1 2 3 25 25 H 1.08996 * 109.47296 * 59.99579 * 1 2 3 26 26 H 1.08999 * 109.46898 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.46715 * 240.00267 * 2 1 3 28 28 H 1.08996 * 109.47296 * 120.00421 * 2 1 3 29 29 H 1.08997 * 109.47168 * 60.00544 * 3 2 1 30 30 H 1.09003 * 109.47328 * 299.99971 * 3 2 1 31 31 H 1.08997 * 109.47037 * 60.00074 * 4 3 2 32 32 H 1.09003 * 109.46740 * 299.99941 * 4 3 2 33 33 H 0.97003 * 120.00266 * 0.02562 * 7 5 4 34 34 H 1.09000 * 109.46747 * 56.55720 * 8 7 5 35 35 H 1.08994 * 109.47496 * 296.55550 * 8 7 5 36 36 H 0.97004 * 119.99699 * 243.04530 * 10 9 8 37 37 H 0.97002 * 120.00329 * 180.02562 * 14 13 11 38 38 H 1.08995 * 109.47368 * 300.00645 * 19 9 8 39 39 H 1.09003 * 109.47074 * 60.00579 * 19 9 8 40 40 H 1.08998 * 109.47142 * 180.02562 * 20 19 9 41 41 H 1.08995 * 109.46935 * 59.99800 * 20 19 9 42 42 H 1.08996 * 109.47766 * 300.00305 * 21 20 19 43 43 H 1.09003 * 109.47165 * 180.02562 * 21 20 19 44 44 H 1.09004 * 109.47132 * 179.97438 * 22 21 20 45 45 H 1.08995 * 109.47785 * 59.99649 * 22 21 20 46 46 H 1.09003 * 109.46897 * 299.99628 * 23 9 8 47 47 H 1.08998 * 109.47225 * 59.99917 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4425 -0.0006 5 6 4.0723 2.8633 0.0000 6 8 3.2843 3.7852 0.0013 7 7 5.3974 3.1096 0.0001 8 6 5.8858 4.4909 0.0002 9 6 7.4132 4.4917 0.0871 10 7 7.9643 3.6702 -0.9936 11 6 7.7546 4.0260 -2.2992 12 1 7.1109 4.8606 -2.5347 13 6 8.3691 3.3138 -3.3200 14 7 9.1539 2.2969 -3.0329 15 14 8.0835 3.7996 -5.1010 16 1 9.1078 4.7925 -5.5136 17 1 8.1849 2.5959 -5.9646 18 1 6.7310 4.3964 -5.2404 19 6 7.9309 5.9252 -0.0473 20 6 9.4585 5.9260 0.0389 21 6 9.8934 5.3511 1.3885 22 6 9.3758 3.9176 1.5228 23 6 7.8477 3.9170 1.4368 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8899 29 1 1.6768 1.9563 0.8900 30 1 1.6767 1.9564 -0.8900 31 1 3.9330 0.9289 -0.8908 32 1 3.9337 0.9285 0.8892 33 1 6.0278 2.3723 -0.0006 34 1 5.4728 5.0222 0.8577 35 1 5.5738 4.9866 -0.9190 36 1 8.4744 2.8721 -0.7843 37 1 9.5837 1.7994 -3.7462 38 1 7.6214 6.3346 -1.0089 39 1 7.5209 6.5364 0.7567 40 1 9.8272 6.9473 -0.0564 41 1 9.8681 5.3149 -0.7653 42 1 9.4837 5.9622 2.1928 43 1 10.9816 5.3521 1.4502 44 1 9.6860 3.5079 2.4841 45 1 9.7854 3.3065 0.7186 46 1 7.4377 4.5282 2.2409 47 1 7.4789 2.8957 1.5325 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001115410967.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:39 Heat of formation + Delta-G solvation = -68.033761 kcal Electronic energy + Delta-G solvation = -23469.713399 eV Core-core repulsion = 20264.929119 eV Total energy + Delta-G solvation = -3204.784280 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.53423 -38.42842 -35.33365 -34.34110 -33.23170 -31.30354 -30.33829 -30.19474 -28.51363 -25.79247 -23.85900 -23.78166 -22.09727 -21.10798 -20.38606 -19.70835 -18.30275 -17.15464 -16.53335 -15.85292 -15.42801 -15.05755 -14.57049 -14.30643 -13.99896 -13.73738 -13.62212 -13.53177 -13.21790 -12.81542 -12.71655 -12.24771 -11.97818 -11.87977 -11.69668 -11.55213 -11.25043 -11.13998 -11.08262 -10.98169 -10.87863 -10.76756 -10.54387 -10.53588 -10.17297 -10.03739 -9.80099 -9.62957 -9.35750 -9.27910 -8.87543 -8.36498 -7.00906 -5.80984 -3.09586 3.15170 3.41062 3.48015 3.48985 3.79026 4.56462 4.90957 4.96028 4.99212 5.20678 5.27075 5.29477 5.34679 5.37127 5.56084 5.57895 5.61764 5.73111 5.75695 5.82438 5.84224 5.88274 5.93363 5.99116 6.05500 6.09210 6.12790 6.17731 6.21907 6.29775 6.32317 6.41823 6.46042 6.52755 6.60917 6.80698 6.82795 6.83630 7.00188 7.14171 7.21234 7.71301 8.13779 8.37281 8.78219 9.49836 10.02863 10.39560 11.41011 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.012827 B = 0.005260 C = 0.004152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2182.376366 B = 5321.907192 C = 6741.378461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.126 4.126 3 C -0.102 4.102 4 C -0.142 4.142 5 C 0.506 3.494 6 O -0.561 6.561 7 N -0.702 5.702 8 C 0.115 3.885 9 C 0.191 3.809 10 N -0.710 5.710 11 C -0.229 4.229 12 H 0.068 0.932 13 C -0.008 4.008 14 N -0.932 5.932 15 Si 0.899 3.101 16 H -0.291 1.291 17 H -0.293 1.293 18 H -0.283 1.283 19 C -0.114 4.114 20 C -0.109 4.109 21 C -0.112 4.112 22 C -0.115 4.115 23 C -0.113 4.113 24 H 0.053 0.947 25 H 0.054 0.946 26 H 0.051 0.949 27 H 0.062 0.938 28 H 0.060 0.940 29 H 0.066 0.934 30 H 0.068 0.932 31 H 0.092 0.908 32 H 0.087 0.913 33 H 0.403 0.597 34 H 0.051 0.949 35 H 0.062 0.938 36 H 0.384 0.616 37 H 0.254 0.746 38 H 0.063 0.937 39 H 0.044 0.956 40 H 0.043 0.957 41 H 0.083 0.917 42 H 0.049 0.951 43 H 0.051 0.949 44 H 0.048 0.952 45 H 0.074 0.926 46 H 0.058 0.942 47 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.446 -1.754 9.963 11.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.163 4.163 3 C -0.140 4.140 4 C -0.182 4.182 5 C 0.293 3.707 6 O -0.441 6.441 7 N -0.352 5.352 8 C -0.012 4.012 9 C 0.099 3.901 10 N -0.352 5.352 11 C -0.360 4.360 12 H 0.086 0.914 13 C -0.204 4.204 14 N -0.580 5.580 15 Si 0.731 3.269 16 H -0.218 1.218 17 H -0.220 1.220 18 H -0.209 1.209 19 C -0.154 4.154 20 C -0.147 4.147 21 C -0.150 4.150 22 C -0.153 4.153 23 C -0.151 4.151 24 H 0.072 0.928 25 H 0.073 0.927 26 H 0.070 0.930 27 H 0.081 0.919 28 H 0.079 0.921 29 H 0.085 0.915 30 H 0.086 0.914 31 H 0.111 0.889 32 H 0.105 0.895 33 H 0.238 0.762 34 H 0.069 0.931 35 H 0.080 0.920 36 H 0.219 0.781 37 H 0.064 0.936 38 H 0.082 0.918 39 H 0.062 0.938 40 H 0.062 0.938 41 H 0.102 0.898 42 H 0.067 0.933 43 H 0.069 0.931 44 H 0.067 0.933 45 H 0.093 0.907 46 H 0.077 0.923 47 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -7.010 -1.025 9.793 12.087 hybrid contribution 0.432 -0.334 -1.136 1.261 sum -6.578 -1.358 8.656 10.957 Atomic orbital electron populations 1.21760 0.95976 1.01262 1.01909 1.21560 0.95854 0.96968 1.01957 1.21337 0.93208 0.96126 1.03343 1.21675 0.97628 0.94677 1.04191 1.20611 0.82576 0.91331 0.76230 1.90639 1.55631 1.46651 1.51164 1.45823 1.06426 1.09729 1.73205 1.21838 0.96435 0.82292 1.00588 1.19817 0.89760 0.91891 0.88636 1.42442 1.63610 1.28385 1.00723 1.19075 1.22307 1.11846 0.82746 0.91371 1.24653 0.99703 0.98540 0.97533 1.69643 1.35053 1.22011 1.31299 0.86309 0.77662 0.77275 0.85694 1.21820 1.21958 1.20899 1.21790 0.95953 0.96948 1.00751 1.21374 0.95987 0.99584 0.97761 1.21470 0.99400 0.96321 0.97794 1.21482 0.95551 0.97243 1.01020 1.21689 0.96094 1.00439 0.96861 0.92798 0.92711 0.92983 0.91949 0.92118 0.91511 0.91352 0.88943 0.89458 0.76182 0.93095 0.92016 0.78081 0.93638 0.91810 0.93775 0.93810 0.89821 0.93269 0.93053 0.93332 0.90713 0.92348 0.92466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 9.91 37.16 0.37 -1.02 16 2 C -0.13 -1.26 5.93 -26.73 -0.16 -1.42 16 3 C -0.10 -1.28 4.50 -26.73 -0.12 -1.40 16 4 C -0.14 -1.86 5.70 -27.88 -0.16 -2.02 16 5 C 0.51 8.76 7.83 -10.99 -0.09 8.68 16 6 O -0.56 -11.59 15.98 5.56 0.09 -11.51 16 7 N -0.70 -12.12 5.09 -60.30 -0.31 -12.42 16 8 C 0.11 2.10 4.37 -4.04 -0.02 2.09 16 9 C 0.19 3.39 0.41 -131.82 -0.05 3.33 16 10 N -0.71 -15.26 3.40 -47.23 -0.16 -15.42 16 11 C -0.23 -5.73 8.70 -15.06 -0.13 -5.86 16 12 H 0.07 1.75 6.77 -52.49 -0.36 1.39 16 13 C -0.01 -0.22 5.50 -17.43 -0.10 -0.32 16 14 N -0.93 -26.11 13.07 55.49 0.73 -25.38 16 15 Si 0.90 21.83 29.55 -169.99 -5.02 16.80 16 16 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 17 H -0.29 -7.25 7.11 56.52 0.40 -6.84 16 18 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 19 C -0.11 -1.99 4.52 -26.73 -0.12 -2.11 16 20 C -0.11 -1.86 5.77 -26.73 -0.15 -2.01 16 21 C -0.11 -1.65 5.92 -26.73 -0.16 -1.81 16 22 C -0.12 -1.74 5.75 -26.70 -0.15 -1.89 16 23 C -0.11 -1.71 4.65 -26.71 -0.12 -1.84 16 24 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 27 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.07 0.87 8.10 -51.93 -0.42 0.45 16 30 H 0.07 0.95 8.10 -51.93 -0.42 0.53 16 31 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 32 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16 33 H 0.40 6.69 7.39 -40.82 -0.30 6.39 16 34 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.06 1.30 7.51 -51.93 -0.39 0.91 16 36 H 0.38 8.87 6.64 -40.82 -0.27 8.60 16 37 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 38 H 0.06 1.22 7.23 -51.93 -0.38 0.84 16 39 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.08 1.71 7.60 -51.93 -0.39 1.32 16 42 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 44 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 45 H 0.07 1.31 6.92 -51.93 -0.36 0.95 16 46 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 47 H 0.06 0.84 7.28 -51.93 -0.38 0.46 16 LS Contribution 363.71 15.07 5.48 5.48 Total: -1.00 -28.53 363.71 -9.08 -37.61 By element: Atomic # 1 Polarization: 21.16 SS G_CDS: -8.72 Total: 12.44 kcal Atomic # 6 Polarization: -6.44 SS G_CDS: -1.16 Total: -7.61 kcal Atomic # 7 Polarization: -53.48 SS G_CDS: 0.26 Total: -53.22 kcal Atomic # 8 Polarization: -11.59 SS G_CDS: 0.09 Total: -11.51 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -28.53 -9.08 -37.61 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001115410967.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.421 kcal (2) G-P(sol) polarization free energy of solvation -28.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds