Wall clock time and date at job start Tue Mar 31 2020 05:54:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47292 * 2 1 4 4 C 1.53002 * 109.47342 * 179.97438 * 3 2 1 5 5 C 1.50697 * 109.46998 * 180.02562 * 4 3 2 6 6 O 1.21276 * 120.00468 * 0.02562 * 5 4 3 7 7 N 1.34782 * 120.00035 * 180.02562 * 5 4 3 8 8 C 1.46931 * 120.62717 * 359.97438 * 7 5 4 9 9 C 1.53195 * 108.77110 * 126.41285 * 8 7 5 10 10 C 1.53035 * 109.31200 * 54.63842 * 9 8 7 11 11 H 1.08997 * 109.46550 * 58.65370 * 10 9 8 12 12 C 1.53002 * 109.46137 * 178.61273 * 10 9 8 13 13 C 1.53045 * 109.53802 * 298.62997 * 10 9 8 14 14 H 1.09000 * 109.52739 * 301.40109 * 13 10 9 15 15 C 1.53000 * 109.49689 * 181.31568 * 13 10 9 16 16 N 1.46499 * 109.46840 * 175.16149 * 15 13 10 17 17 C 1.36936 * 120.00002 * 180.02562 * 16 15 13 18 18 H 1.08004 * 120.00140 * 0.02562 * 17 16 15 19 19 C 1.38811 * 120.00367 * 180.02562 * 17 16 15 20 20 N 1.31619 * 119.99972 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00444 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.46864 * 359.97438 * 21 19 17 23 23 H 1.48494 * 109.47259 * 119.99588 * 21 19 17 24 24 H 1.48495 * 109.47205 * 239.99955 * 21 19 17 25 25 C 1.46919 * 120.63190 * 180.02562 * 7 5 4 26 26 H 1.08994 * 109.47237 * 300.00355 * 1 2 3 27 27 H 1.09004 * 109.47027 * 60.00246 * 1 2 3 28 28 H 1.09002 * 109.47027 * 179.97438 * 1 2 3 29 29 H 1.09006 * 109.47276 * 240.00019 * 2 1 3 30 30 H 1.08996 * 109.46948 * 120.00071 * 2 1 3 31 31 H 1.09006 * 109.46945 * 59.99816 * 3 2 1 32 32 H 1.09002 * 109.47556 * 300.00153 * 3 2 1 33 33 H 1.08996 * 109.46552 * 60.00486 * 4 3 2 34 34 H 1.08996 * 109.47216 * 300.00265 * 4 3 2 35 35 H 1.08998 * 109.58550 * 246.20269 * 8 7 5 36 36 H 1.08995 * 109.58730 * 6.48612 * 8 7 5 37 37 H 1.09005 * 109.49531 * 174.58550 * 9 8 7 38 38 H 1.08993 * 109.49943 * 294.68525 * 9 8 7 39 39 H 1.09002 * 109.47420 * 180.02562 * 12 10 9 40 40 H 1.09003 * 109.46607 * 300.06743 * 12 10 9 41 41 H 1.08998 * 109.47276 * 60.06703 * 12 10 9 42 42 H 1.09002 * 109.47398 * 295.16475 * 15 13 10 43 43 H 1.09001 * 109.47194 * 55.16655 * 15 13 10 44 44 H 0.97000 * 120.00420 * 0.02562 * 16 15 13 45 45 H 0.96996 * 120.00586 * 180.02562 * 20 19 17 46 46 H 1.08999 * 109.58985 * 113.79889 * 25 7 5 47 47 H 1.08992 * 109.58857 * 353.36984 * 25 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0723 2.8633 0.0013 6 8 3.2843 3.7851 0.0017 7 7 5.3974 3.1096 0.0014 8 6 6.3644 2.0034 0.0015 9 6 7.3372 2.1989 -1.1657 10 6 7.9716 3.5882 -1.0686 11 1 8.4909 3.6845 -0.1152 12 6 8.9696 3.7740 -2.2133 13 6 6.8804 4.6569 -1.1652 14 1 6.3443 4.5462 -2.1077 15 6 7.5189 6.0459 -1.1009 16 7 6.4890 7.0668 -1.3090 17 6 6.8274 8.3936 -1.2944 18 1 7.8535 8.6874 -1.1299 19 6 5.8515 9.3610 -1.4910 20 7 4.6010 9.0030 -1.6920 21 14 6.3132 11.1710 -1.4718 22 1 7.7718 11.3071 -1.2288 23 1 5.9696 11.7834 -2.7802 24 1 5.5652 11.8612 -0.3905 25 6 5.9024 4.4893 0.0026 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8934 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.6766 1.9563 0.8900 32 1 1.6767 1.9564 -0.8900 33 1 3.9336 0.9286 -0.8891 34 1 3.9330 0.9288 0.8908 35 1 6.9168 2.0010 0.9411 36 1 5.8368 1.0568 -0.1146 37 1 8.1173 1.4388 -1.1204 38 1 6.7970 2.1107 -2.1082 39 1 9.4219 4.7633 -2.1440 40 1 9.7469 3.0129 -2.1447 41 1 8.4507 3.6784 -3.1670 42 1 7.9801 6.1889 -0.1237 43 1 8.2787 6.1328 -1.8776 44 1 5.5674 6.8030 -1.4571 45 1 3.9191 9.6789 -1.8297 46 1 6.4172 4.6893 0.9423 47 1 5.0701 5.1831 -0.1153 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001132670956.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:17 Heat of formation + Delta-G solvation = -55.890351 kcal Electronic energy + Delta-G solvation = -23025.065597 eV Core-core repulsion = 19820.807895 eV Total energy + Delta-G solvation = -3204.257703 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.18255 -38.03934 -35.42605 -34.93026 -33.63732 -31.89551 -30.74744 -29.68879 -28.10466 -25.87655 -24.48560 -23.19510 -22.92748 -21.24247 -21.17504 -19.79822 -18.75766 -17.12134 -16.71643 -16.07716 -15.78311 -14.91628 -14.82142 -14.38771 -14.03842 -13.87211 -13.82684 -13.54106 -13.42263 -13.03945 -12.75826 -12.71763 -12.42527 -12.28803 -11.85916 -11.70960 -11.56767 -11.43488 -11.21983 -11.12580 -10.96120 -10.84545 -10.76059 -10.69987 -10.56392 -10.23084 -10.12194 -9.89777 -9.59140 -9.44707 -8.81175 -8.41114 -6.83780 -5.67685 -2.97304 2.83808 3.15340 3.48232 3.52988 3.55916 4.48766 4.62817 4.68852 4.76286 4.80391 4.87638 4.91234 5.06416 5.15790 5.20320 5.30391 5.33226 5.35871 5.54214 5.63898 5.65794 5.67768 5.69735 5.71648 5.76943 5.78919 5.84720 5.94083 5.99089 6.00164 6.05856 6.13651 6.22256 6.27726 6.28707 6.35900 6.48331 6.62640 6.72370 6.85483 6.93934 7.60565 7.76712 8.40820 8.49992 9.60926 10.19567 10.53636 11.54679 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.015019 B = 0.004162 C = 0.003356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1863.809035 B = 6726.337353 C = 8341.475783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.124 4.124 3 C -0.107 4.107 4 C -0.138 4.138 5 C 0.507 3.493 6 O -0.531 6.531 7 N -0.614 5.614 8 C 0.107 3.893 9 C -0.129 4.129 10 C -0.084 4.084 11 H 0.070 0.930 12 C -0.148 4.148 13 C -0.101 4.101 14 H 0.073 0.927 15 C 0.159 3.841 16 N -0.733 5.733 17 C -0.240 4.240 18 H 0.070 0.930 19 C -0.014 4.014 20 N -0.929 5.929 21 Si 0.905 3.095 22 H -0.281 1.281 23 H -0.292 1.292 24 H -0.292 1.292 25 C 0.119 3.881 26 H 0.055 0.945 27 H 0.055 0.945 28 H 0.052 0.948 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.089 0.911 34 H 0.088 0.912 35 H 0.066 0.934 36 H 0.081 0.919 37 H 0.072 0.928 38 H 0.066 0.934 39 H 0.065 0.935 40 H 0.048 0.952 41 H 0.053 0.947 42 H 0.018 0.982 43 H 0.027 0.973 44 H 0.385 0.615 45 H 0.254 0.746 46 H 0.063 0.937 47 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.058 -22.575 3.285 22.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.161 4.161 3 C -0.145 4.145 4 C -0.178 4.178 5 C 0.295 3.705 6 O -0.407 6.407 7 N -0.348 5.348 8 C -0.016 4.016 9 C -0.167 4.167 10 C -0.103 4.103 11 H 0.089 0.911 12 C -0.205 4.205 13 C -0.121 4.121 14 H 0.091 0.909 15 C 0.031 3.969 16 N -0.378 5.378 17 C -0.372 4.372 18 H 0.088 0.912 19 C -0.210 4.210 20 N -0.577 5.577 21 Si 0.737 3.263 22 H -0.206 1.206 23 H -0.219 1.219 24 H -0.219 1.219 25 C -0.003 4.003 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.071 0.929 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.088 0.912 32 H 0.089 0.911 33 H 0.108 0.892 34 H 0.107 0.893 35 H 0.085 0.915 36 H 0.099 0.901 37 H 0.091 0.909 38 H 0.085 0.915 39 H 0.084 0.916 40 H 0.067 0.933 41 H 0.072 0.928 42 H 0.035 0.965 43 H 0.044 0.956 44 H 0.219 0.781 45 H 0.064 0.936 46 H 0.081 0.919 47 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 1.718 -21.919 3.304 22.233 hybrid contribution 0.065 0.923 -0.075 0.928 sum 1.783 -20.996 3.229 21.318 Atomic orbital electron populations 1.21764 0.95767 1.01340 1.02173 1.21540 0.96115 0.96724 1.01734 1.21401 0.92867 0.96376 1.03872 1.21706 0.97984 0.94337 1.03740 1.20728 0.81913 0.91647 0.76262 1.90764 1.54593 1.46418 1.48911 1.48229 1.05359 1.07692 1.73530 1.21720 0.91242 0.89717 0.98930 1.21983 0.98417 0.97657 0.98655 1.21086 0.95948 0.93832 0.99475 0.91135 1.21883 0.98443 1.01996 0.98177 1.21716 0.95681 0.95766 0.98916 0.90868 1.20723 0.92230 0.86213 0.97773 1.42431 1.06693 1.01752 1.86908 1.19242 0.93773 0.82832 1.41313 0.91224 1.24759 0.95459 0.97905 1.02868 1.69686 1.00064 1.32230 1.55767 0.86142 0.77351 0.85695 0.77149 1.20623 1.21927 1.21898 1.21713 0.98874 0.81822 0.97845 0.92635 0.92580 0.92934 0.92107 0.92158 0.91174 0.91058 0.89223 0.89321 0.91528 0.90063 0.90946 0.91505 0.91634 0.93257 0.92803 0.96461 0.95579 0.78118 0.93558 0.91861 0.87886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 9.91 37.16 0.37 -0.87 16 2 C -0.12 -1.01 5.93 -26.73 -0.16 -1.17 16 3 C -0.11 -1.17 4.50 -26.73 -0.12 -1.29 16 4 C -0.14 -1.42 4.05 -27.88 -0.11 -1.54 16 5 C 0.51 7.80 7.70 -10.98 -0.08 7.71 16 6 O -0.53 -10.90 15.39 5.56 0.09 -10.81 16 7 N -0.61 -8.72 2.97 -172.75 -0.51 -9.23 16 8 C 0.11 1.05 6.34 -3.71 -0.02 1.02 16 9 C -0.13 -1.27 5.36 -26.61 -0.14 -1.41 16 10 C -0.08 -1.04 2.23 -90.58 -0.20 -1.24 16 11 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 12 C -0.15 -1.75 8.82 37.16 0.33 -1.42 16 13 C -0.10 -1.68 1.92 -90.47 -0.17 -1.85 16 14 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 15 C 0.16 3.23 5.41 -4.04 -0.02 3.21 16 16 N -0.73 -19.23 5.38 -59.91 -0.32 -19.56 16 17 C -0.24 -6.93 9.99 -15.06 -0.15 -7.08 16 18 H 0.07 1.94 7.83 -52.48 -0.41 1.53 16 19 C -0.01 -0.41 5.50 -17.43 -0.10 -0.50 16 20 N -0.93 -29.35 13.06 55.49 0.72 -28.63 16 21 Si 0.91 23.08 29.55 -169.99 -5.02 18.05 16 22 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 23 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 24 H -0.29 -7.48 7.11 56.52 0.40 -7.07 16 25 C 0.12 2.07 5.52 -3.69 -0.02 2.05 16 26 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 27 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.07 0.86 8.10 -51.93 -0.42 0.44 16 32 H 0.07 0.90 8.10 -51.93 -0.42 0.48 16 33 H 0.09 0.76 7.69 -51.93 -0.40 0.36 16 34 H 0.09 0.72 7.94 -51.93 -0.41 0.31 16 35 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.08 0.59 5.93 -51.93 -0.31 0.28 16 37 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.06 0.86 6.30 -51.93 -0.33 0.53 16 40 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 42 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 43 H 0.03 0.53 6.15 -51.93 -0.32 0.21 16 44 H 0.38 10.85 6.89 -40.82 -0.28 10.57 16 45 H 0.25 7.76 8.31 -40.82 -0.34 7.42 16 46 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 47 H 0.10 2.25 6.21 -51.93 -0.32 1.93 16 LS Contribution 364.29 15.07 5.49 5.49 Total: -1.00 -33.93 364.29 -8.85 -42.78 By element: Atomic # 1 Polarization: 14.97 SS G_CDS: -8.68 Total: 6.30 kcal Atomic # 6 Polarization: -3.78 SS G_CDS: -0.61 Total: -4.39 kcal Atomic # 7 Polarization: -57.30 SS G_CDS: -0.11 Total: -57.42 kcal Atomic # 8 Polarization: -10.90 SS G_CDS: 0.09 Total: -10.81 kcal Atomic # 14 Polarization: 23.08 SS G_CDS: -5.02 Total: 18.05 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -33.93 -8.85 -42.78 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132670956.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.110 kcal (2) G-P(sol) polarization free energy of solvation -33.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds