Wall clock time and date at job start Tue Mar 31 2020 05:54:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 C 1.52997 * 109.47127 * 179.97438 * 3 2 1 5 5 C 1.50696 * 109.47242 * 179.97438 * 4 3 2 6 6 O 1.21284 * 119.99909 * 359.97438 * 5 4 3 7 7 N 1.34779 * 120.00395 * 179.97438 * 5 4 3 8 8 C 1.46923 * 120.62648 * 359.97438 * 7 5 4 9 9 C 1.53199 * 108.77217 * 233.58514 * 8 7 5 10 10 C 1.53038 * 109.31234 * 305.36306 * 9 8 7 11 11 H 1.08994 * 109.46009 * 181.38608 * 10 9 8 12 12 C 1.53003 * 109.46283 * 301.35929 * 10 9 8 13 13 C 1.53044 * 109.53698 * 61.36838 * 10 9 8 14 14 H 1.08996 * 109.49671 * 58.58339 * 13 10 9 15 15 C 1.52993 * 109.49556 * 178.65049 * 13 10 9 16 16 N 1.46503 * 109.46814 * 184.99654 * 15 13 10 17 17 C 1.36942 * 119.99800 * 179.97438 * 16 15 13 18 18 H 1.07995 * 120.00133 * 0.02562 * 17 16 15 19 19 C 1.38812 * 119.99771 * 179.97438 * 17 16 15 20 20 N 1.31621 * 120.00420 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 119.99873 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47420 * 0.02562 * 21 19 17 23 23 H 1.48506 * 109.46864 * 120.00506 * 21 19 17 24 24 H 1.48504 * 109.47374 * 240.00184 * 21 19 17 25 25 C 1.46919 * 120.63290 * 179.71800 * 7 5 4 26 26 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 28 28 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 29 29 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 30 30 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 31 31 H 1.09001 * 109.47002 * 299.99574 * 3 2 1 32 32 H 1.08993 * 109.46955 * 60.00011 * 3 2 1 33 33 H 1.09001 * 109.47289 * 299.99953 * 4 3 2 34 34 H 1.09004 * 109.47261 * 59.99697 * 4 3 2 35 35 H 1.09005 * 109.58802 * 353.37124 * 8 7 5 36 36 H 1.08999 * 109.58870 * 113.80108 * 8 7 5 37 37 H 1.08995 * 109.49935 * 65.32106 * 9 8 7 38 38 H 1.09003 * 109.49179 * 185.38300 * 9 8 7 39 39 H 1.09001 * 109.47003 * 59.99714 * 12 10 9 40 40 H 1.08996 * 109.47525 * 179.97438 * 12 10 9 41 41 H 1.09004 * 109.46931 * 300.00181 * 12 10 9 42 42 H 1.08996 * 109.47621 * 304.99643 * 15 13 10 43 43 H 1.09003 * 109.47596 * 65.00214 * 15 13 10 44 44 H 0.97000 * 120.00372 * 0.02562 * 16 15 13 45 45 H 0.96995 * 120.00563 * 180.02562 * 20 19 17 46 46 H 1.09007 * 109.58832 * 246.20186 * 25 7 5 47 47 H 1.09003 * 109.58826 * 6.62756 * 25 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 0.0006 5 6 4.0723 2.8633 0.0000 6 8 3.2842 3.7852 -0.0013 7 7 5.3974 3.1097 0.0009 8 6 6.3644 2.0035 0.0031 9 6 7.3360 2.2004 1.1711 10 6 7.9705 3.5896 1.0730 11 1 8.6807 3.7229 1.8889 12 6 8.7004 3.7233 -0.2651 13 6 6.8792 4.6584 1.1672 14 1 6.3423 4.5482 2.1093 15 6 7.5178 6.0472 1.1028 16 7 6.4882 7.0682 1.3124 17 6 6.8269 8.3951 1.2979 18 1 7.8527 8.6888 1.1316 19 6 5.8513 9.3625 1.4960 20 7 4.6009 9.0046 1.6982 21 14 6.3133 11.1723 1.4770 22 1 7.7716 11.3085 1.2324 23 1 5.5640 11.8631 0.3968 24 1 5.9712 11.7844 2.7861 25 6 5.9024 4.4893 -0.0059 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 0.5139 0.8900 29 1 1.8934 -0.5137 0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 1.6767 1.9564 -0.8900 32 1 1.6767 1.9563 0.8899 33 1 3.9330 0.9289 0.8909 34 1 3.9337 0.9285 -0.8891 35 1 5.8367 1.0571 0.1223 36 1 6.9178 2.0000 -0.9359 37 1 6.7949 2.1132 2.1132 38 1 8.1158 1.4399 1.1277 39 1 7.9904 3.5895 -1.0812 40 1 9.1520 4.7128 -0.3354 41 1 9.4785 2.9629 -0.3320 42 1 8.2785 6.1337 1.8785 43 1 7.9779 6.1907 0.1251 44 1 5.5669 6.8045 1.4621 45 1 3.9192 9.6806 1.8362 46 1 6.4188 4.6849 -0.9458 47 1 5.0698 5.1838 0.1073 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001132670957.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:21 Heat of formation + Delta-G solvation = -52.778769 kcal Electronic energy + Delta-G solvation = -23153.419657 eV Core-core repulsion = 19949.296883 eV Total energy + Delta-G solvation = -3204.122774 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.30197 -38.16124 -35.42002 -34.89464 -33.45477 -31.86050 -30.72674 -29.67729 -27.60501 -25.97429 -24.88403 -23.78510 -23.08243 -21.25228 -21.14040 -19.45745 -18.04568 -17.15402 -16.74408 -16.04289 -15.76499 -14.96843 -14.90163 -14.85173 -14.25476 -13.87577 -13.65600 -13.55987 -13.47998 -12.97459 -12.78246 -12.56737 -12.44428 -12.38191 -11.90295 -11.62455 -11.43667 -11.36454 -11.16968 -11.09768 -11.01929 -10.85672 -10.77102 -10.69895 -10.57743 -10.23606 -10.14051 -9.89534 -9.59438 -9.45343 -8.81132 -8.35901 -6.84158 -5.67747 -2.97440 2.84198 3.16028 3.48185 3.52955 3.55883 4.49094 4.63258 4.69843 4.76852 4.80197 4.88034 4.92612 5.07556 5.16368 5.22017 5.29903 5.32700 5.34583 5.51443 5.60046 5.64606 5.67256 5.68407 5.69476 5.75537 5.77187 5.86228 5.93919 5.98767 6.00801 6.04728 6.13803 6.20939 6.28637 6.35601 6.38259 6.40754 6.63651 6.73306 6.82727 6.94126 7.61394 7.76705 8.41379 8.49927 9.60865 10.19461 10.53551 11.54607 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.015554 B = 0.004174 C = 0.003382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1799.801677 B = 6707.043552 C = 8275.968847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.124 4.124 3 C -0.107 4.107 4 C -0.138 4.138 5 C 0.506 3.494 6 O -0.531 6.531 7 N -0.613 5.613 8 C 0.106 3.894 9 C -0.129 4.129 10 C -0.085 4.085 11 H 0.072 0.928 12 C -0.153 4.153 13 C -0.101 4.101 14 H 0.072 0.928 15 C 0.160 3.840 16 N -0.733 5.733 17 C -0.240 4.240 18 H 0.070 0.930 19 C -0.014 4.014 20 N -0.929 5.929 21 Si 0.905 3.095 22 H -0.281 1.281 23 H -0.292 1.292 24 H -0.292 1.292 25 C 0.119 3.881 26 H 0.052 0.948 27 H 0.054 0.946 28 H 0.055 0.945 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.089 0.911 34 H 0.088 0.912 35 H 0.080 0.920 36 H 0.069 0.931 37 H 0.066 0.934 38 H 0.072 0.928 39 H 0.057 0.943 40 H 0.063 0.937 41 H 0.049 0.951 42 H 0.020 0.980 43 H 0.022 0.978 44 H 0.385 0.615 45 H 0.254 0.746 46 H 0.066 0.934 47 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.970 -22.594 -4.087 23.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.161 4.161 3 C -0.145 4.145 4 C -0.178 4.178 5 C 0.294 3.706 6 O -0.407 6.407 7 N -0.347 5.347 8 C -0.017 4.017 9 C -0.167 4.167 10 C -0.104 4.104 11 H 0.091 0.909 12 C -0.210 4.210 13 C -0.121 4.121 14 H 0.091 0.909 15 C 0.032 3.968 16 N -0.378 5.378 17 C -0.372 4.372 18 H 0.088 0.912 19 C -0.210 4.210 20 N -0.577 5.577 21 Si 0.737 3.263 22 H -0.206 1.206 23 H -0.219 1.219 24 H -0.219 1.219 25 C -0.002 4.002 26 H 0.071 0.929 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.088 0.912 32 H 0.089 0.911 33 H 0.108 0.892 34 H 0.107 0.893 35 H 0.098 0.902 36 H 0.088 0.912 37 H 0.084 0.916 38 H 0.090 0.910 39 H 0.075 0.925 40 H 0.082 0.918 41 H 0.068 0.932 42 H 0.037 0.963 43 H 0.040 0.960 44 H 0.219 0.781 45 H 0.064 0.936 46 H 0.084 0.916 47 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 1.631 -21.938 -4.108 22.379 hybrid contribution 0.079 0.924 0.123 0.935 sum 1.710 -21.014 -3.985 21.457 Atomic orbital electron populations 1.21764 0.95768 1.01338 1.02171 1.21540 0.96112 0.96730 1.01732 1.21399 0.92876 0.96368 1.03865 1.21706 0.97972 0.94355 1.03731 1.20727 0.81925 0.91637 0.76288 1.90766 1.54589 1.46419 1.48942 1.48212 1.05315 1.07691 1.73496 1.21746 0.91202 0.89640 0.99123 1.21945 0.98504 0.97687 0.98599 1.21068 0.96944 0.93864 0.98508 0.90915 1.21986 0.99818 1.02078 0.97077 1.21748 0.95787 0.95735 0.98840 0.90913 1.20679 0.92084 0.86241 0.97754 1.42438 1.06734 1.01756 1.86876 1.19243 0.93802 0.82831 1.41299 0.91219 1.24760 0.95461 0.97912 1.02855 1.69686 1.00080 1.32231 1.55744 0.86142 0.77353 0.85686 0.77152 1.20621 1.21892 1.21926 1.21797 0.98725 0.81787 0.97925 0.92937 0.92637 0.92580 0.92111 0.92161 0.91173 0.91068 0.89233 0.89337 0.90186 0.91250 0.91555 0.90957 0.92452 0.91805 0.93192 0.96257 0.95993 0.78109 0.93554 0.91577 0.88019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 9.91 37.16 0.37 -0.87 16 2 C -0.12 -1.01 5.93 -26.73 -0.16 -1.17 16 3 C -0.11 -1.17 4.50 -26.73 -0.12 -1.29 16 4 C -0.14 -1.42 4.05 -27.89 -0.11 -1.54 16 5 C 0.51 7.78 7.70 -10.99 -0.08 7.69 16 6 O -0.53 -10.89 15.39 5.55 0.09 -10.80 16 7 N -0.61 -8.66 2.97 -172.53 -0.51 -9.17 16 8 C 0.11 1.04 5.87 -3.71 -0.02 1.02 16 9 C -0.13 -1.27 5.63 -26.61 -0.15 -1.42 16 10 C -0.08 -1.05 2.71 -90.58 -0.25 -1.29 16 11 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 12 C -0.15 -1.73 8.12 37.16 0.30 -1.43 16 13 C -0.10 -1.69 2.16 -90.30 -0.19 -1.88 16 14 H 0.07 1.34 8.14 -51.93 -0.42 0.91 16 15 C 0.16 3.27 5.19 -4.04 -0.02 3.25 16 16 N -0.73 -19.26 5.38 -59.91 -0.32 -19.59 16 17 C -0.24 -6.95 9.99 -15.06 -0.15 -7.10 16 18 H 0.07 1.95 7.83 -52.49 -0.41 1.53 16 19 C -0.01 -0.41 5.50 -17.43 -0.10 -0.50 16 20 N -0.93 -29.36 13.06 55.49 0.72 -28.64 16 21 Si 0.91 23.08 29.55 -169.99 -5.02 18.06 16 22 H -0.28 -6.90 7.11 56.52 0.40 -6.49 16 23 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 24 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 25 C 0.12 2.06 5.07 -3.51 -0.02 2.04 16 26 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 28 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.07 0.86 8.10 -51.93 -0.42 0.44 16 32 H 0.07 0.90 8.10 -51.93 -0.42 0.48 16 33 H 0.09 0.76 7.69 -51.93 -0.40 0.37 16 34 H 0.09 0.72 7.95 -51.93 -0.41 0.31 16 35 H 0.08 0.59 5.93 -51.93 -0.31 0.28 16 36 H 0.07 0.62 6.69 -51.93 -0.35 0.27 16 37 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 38 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.06 0.66 4.97 -51.93 -0.26 0.40 16 40 H 0.06 0.80 6.57 -51.93 -0.34 0.46 16 41 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.02 0.45 6.73 -51.93 -0.35 0.10 16 44 H 0.38 10.86 6.92 -40.82 -0.28 10.58 16 45 H 0.25 7.76 8.31 -40.82 -0.34 7.43 16 46 H 0.07 1.11 6.69 -51.92 -0.35 0.76 16 47 H 0.10 2.22 6.23 -51.93 -0.32 1.90 16 LS Contribution 358.26 15.07 5.40 5.40 Total: -1.00 -33.93 358.26 -8.76 -42.69 By element: Atomic # 1 Polarization: 14.94 SS G_CDS: -8.41 Total: 6.54 kcal Atomic # 6 Polarization: -3.78 SS G_CDS: -0.70 Total: -4.49 kcal Atomic # 7 Polarization: -57.29 SS G_CDS: -0.11 Total: -57.39 kcal Atomic # 8 Polarization: -10.89 SS G_CDS: 0.09 Total: -10.80 kcal Atomic # 14 Polarization: 23.08 SS G_CDS: -5.02 Total: 18.06 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -33.93 -8.76 -42.69 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132670957.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.089 kcal (2) G-P(sol) polarization free energy of solvation -33.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.689 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds