Wall clock time and date at job start Tue Mar 31 2020 05:54:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47164 * 2 1 4 4 C 1.52996 * 109.46975 * 179.97438 * 3 2 1 5 5 C 1.50705 * 109.47349 * 179.97438 * 4 3 2 6 6 O 1.21290 * 119.99603 * 0.02562 * 5 4 3 7 7 N 1.34776 * 120.00162 * 180.02562 * 5 4 3 8 8 C 1.46916 * 120.63150 * 359.72299 * 7 5 4 9 9 C 1.53624 * 108.54783 * 126.36871 * 8 7 5 10 10 C 1.53041 * 109.23820 * 54.85214 * 9 8 7 11 11 H 1.09002 * 109.45599 * 178.49496 * 10 9 8 12 12 C 1.52999 * 109.44770 * 58.52929 * 10 9 8 13 13 C 1.53046 * 109.54112 * 298.51327 * 10 9 8 14 14 H 1.08991 * 109.49575 * 301.41697 * 13 10 9 15 15 C 1.52994 * 109.49701 * 181.31614 * 13 10 9 16 16 N 1.46496 * 109.47246 * 175.16238 * 15 13 10 17 17 C 1.36933 * 120.00310 * 180.02562 * 16 15 13 18 18 H 1.08002 * 120.00077 * 0.02562 * 17 16 15 19 19 C 1.38821 * 120.00223 * 180.02562 * 17 16 15 20 20 N 1.31617 * 119.99589 * 359.97438 * 19 17 16 21 21 Si 1.86793 * 120.00186 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.46902 * 359.97438 * 21 19 17 23 23 H 1.48496 * 109.47118 * 119.99929 * 21 19 17 24 24 H 1.48498 * 109.47400 * 240.00212 * 21 19 17 25 25 C 1.46934 * 120.62668 * 180.02562 * 7 5 4 26 26 H 1.09001 * 109.47002 * 59.99738 * 1 2 3 27 27 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47050 * 300.00004 * 1 2 3 29 29 H 1.09001 * 109.46998 * 119.99705 * 2 1 3 30 30 H 1.09000 * 109.47050 * 239.99996 * 2 1 3 31 31 H 1.09001 * 109.47375 * 300.00034 * 3 2 1 32 32 H 1.09000 * 109.47140 * 60.00051 * 3 2 1 33 33 H 1.09001 * 109.47367 * 299.99815 * 4 3 2 34 34 H 1.09004 * 109.47368 * 60.00217 * 4 3 2 35 35 H 1.09000 * 109.58831 * 246.20089 * 8 7 5 36 36 H 1.09001 * 109.59023 * 6.62562 * 8 7 5 37 37 H 1.09003 * 109.62815 * 294.86785 * 9 8 7 38 38 H 1.08998 * 109.43409 * 174.72302 * 9 8 7 39 39 H 1.08995 * 109.47313 * 299.93350 * 12 10 9 40 40 H 1.08996 * 109.46919 * 59.94090 * 12 10 9 41 41 H 1.08999 * 109.46946 * 179.97438 * 12 10 9 42 42 H 1.09000 * 109.47727 * 295.16749 * 15 13 10 43 43 H 1.09005 * 109.46914 * 55.16238 * 15 13 10 44 44 H 0.97007 * 120.00109 * 0.02562 * 16 15 13 45 45 H 0.96999 * 119.99988 * 179.97438 * 20 19 17 46 46 H 1.09001 * 109.58724 * 353.37473 * 25 7 5 47 47 H 1.08998 * 109.58068 * 113.65583 * 25 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 6 4.0725 2.8632 0.0000 6 8 3.2843 3.7851 -0.0004 7 7 5.3976 3.1095 -0.0001 8 6 6.3645 2.0033 0.0065 9 6 7.3373 2.1977 -1.1664 10 6 7.9717 3.5872 -1.0705 11 1 8.6827 3.7188 -1.8861 12 6 8.7003 3.7232 0.2680 13 6 6.8805 4.6559 -1.1680 14 1 6.3446 4.5437 -2.1104 15 6 7.5189 6.0448 -1.1050 16 7 6.4892 7.0656 -1.3139 17 6 6.8276 8.3924 -1.3005 18 1 7.8538 8.6863 -1.1362 19 6 5.8517 9.3597 -1.4979 20 7 4.6012 9.0014 -1.6986 21 14 6.3132 11.1696 -1.4789 22 1 7.7717 11.3060 -1.2350 23 1 5.9703 11.7817 -2.7877 24 1 5.5645 11.8601 -0.3982 25 6 5.9025 4.4893 -0.0002 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8934 -0.5138 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 3.9330 0.9287 0.8909 34 1 3.9338 0.9285 -0.8891 35 1 6.9161 2.0058 0.9466 36 1 5.8371 1.0562 -0.1075 37 1 6.7970 2.1087 -2.1089 38 1 8.1173 1.4377 -1.1204 39 1 7.9893 3.5922 1.0836 40 1 9.4775 2.9622 0.3375 41 1 9.1526 4.7126 0.3364 42 1 7.9803 6.1887 -0.1279 43 1 8.2788 6.1309 -1.8817 44 1 5.5675 6.8016 -1.4618 45 1 3.9192 9.6773 -1.8362 46 1 5.0702 5.1830 -0.1186 47 1 6.4151 4.6907 0.9405 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001132670958.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:25 Heat of formation + Delta-G solvation = -52.743876 kcal Electronic energy + Delta-G solvation = -23154.549324 eV Core-core repulsion = 19950.428063 eV Total energy + Delta-G solvation = -3204.121261 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.30047 -38.16102 -35.41939 -34.89328 -33.45532 -31.85845 -30.72608 -29.66945 -27.60297 -25.97265 -24.88960 -23.78828 -23.08411 -21.25109 -21.13917 -19.45851 -18.04606 -17.15634 -16.74243 -16.04171 -15.76505 -14.97009 -14.89727 -14.85152 -14.25305 -13.87641 -13.65569 -13.55984 -13.47719 -12.97351 -12.78132 -12.56673 -12.44266 -12.38159 -11.90199 -11.62409 -11.43614 -11.36332 -11.17072 -11.09899 -11.02320 -10.85764 -10.77141 -10.69871 -10.57992 -10.23688 -10.13642 -9.89553 -9.59363 -9.45210 -8.81167 -8.35949 -6.84249 -5.67818 -2.97436 2.84254 3.16041 3.48189 3.52937 3.55875 4.49187 4.63276 4.70008 4.76806 4.80177 4.87635 4.92702 5.07556 5.16386 5.22044 5.29630 5.32562 5.34440 5.51596 5.60334 5.64569 5.67249 5.68479 5.69692 5.75611 5.77225 5.86127 5.93667 5.98847 6.00843 6.04766 6.13816 6.20858 6.28653 6.35621 6.38292 6.40810 6.63768 6.73577 6.82720 6.94079 7.61460 7.76660 8.41427 8.49866 9.60800 10.19407 10.53491 11.54555 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.015550 B = 0.004175 C = 0.003383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1800.164285 B = 6704.276275 C = 8273.826827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.124 4.124 3 C -0.107 4.107 4 C -0.138 4.138 5 C 0.506 3.494 6 O -0.531 6.531 7 N -0.613 5.613 8 C 0.106 3.894 9 C -0.129 4.129 10 C -0.085 4.085 11 H 0.072 0.928 12 C -0.153 4.153 13 C -0.101 4.101 14 H 0.072 0.928 15 C 0.161 3.839 16 N -0.733 5.733 17 C -0.241 4.241 18 H 0.070 0.930 19 C -0.014 4.014 20 N -0.929 5.929 21 Si 0.905 3.095 22 H -0.281 1.281 23 H -0.292 1.292 24 H -0.292 1.292 25 C 0.119 3.881 26 H 0.055 0.945 27 H 0.052 0.948 28 H 0.054 0.946 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.071 0.929 32 H 0.069 0.931 33 H 0.088 0.912 34 H 0.089 0.911 35 H 0.070 0.930 36 H 0.080 0.920 37 H 0.066 0.934 38 H 0.072 0.928 39 H 0.057 0.943 40 H 0.049 0.951 41 H 0.063 0.937 42 H 0.022 0.978 43 H 0.020 0.980 44 H 0.385 0.615 45 H 0.254 0.746 46 H 0.101 0.899 47 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.972 -22.584 4.098 23.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.161 4.161 3 C -0.145 4.145 4 C -0.178 4.178 5 C 0.294 3.706 6 O -0.407 6.407 7 N -0.347 5.347 8 C -0.017 4.017 9 C -0.167 4.167 10 C -0.104 4.104 11 H 0.091 0.909 12 C -0.210 4.210 13 C -0.121 4.121 14 H 0.091 0.909 15 C 0.033 3.967 16 N -0.378 5.378 17 C -0.372 4.372 18 H 0.088 0.912 19 C -0.210 4.210 20 N -0.577 5.577 21 Si 0.737 3.263 22 H -0.206 1.206 23 H -0.219 1.219 24 H -0.219 1.219 25 C -0.002 4.002 26 H 0.074 0.926 27 H 0.071 0.929 28 H 0.074 0.926 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.089 0.911 32 H 0.088 0.912 33 H 0.107 0.893 34 H 0.108 0.892 35 H 0.088 0.912 36 H 0.098 0.902 37 H 0.085 0.915 38 H 0.090 0.910 39 H 0.075 0.925 40 H 0.068 0.932 41 H 0.082 0.918 42 H 0.040 0.960 43 H 0.037 0.963 44 H 0.219 0.781 45 H 0.064 0.936 46 H 0.120 0.880 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 1.632 -21.928 4.117 22.370 hybrid contribution 0.077 0.924 -0.119 0.935 sum 1.709 -21.003 3.998 21.449 Atomic orbital electron populations 1.21764 0.95770 1.01337 1.02171 1.21541 0.96112 0.96730 1.01730 1.21398 0.92876 0.96368 1.03866 1.21707 0.97972 0.94354 1.03729 1.20731 0.81927 0.91637 0.76290 1.90767 1.54591 1.46419 1.48945 1.48212 1.05317 1.07691 1.73492 1.21836 0.91182 0.89638 0.99082 1.22018 0.98490 0.97659 0.98539 1.21070 0.96947 0.93870 0.98504 0.90915 1.21984 0.99828 1.02074 0.97074 1.21681 0.95782 0.95760 0.98878 0.90925 1.20677 0.92082 0.86225 0.97761 1.42436 1.06690 1.01763 1.86913 1.19244 0.93777 0.82832 1.41330 0.91220 1.24762 0.95462 0.97916 1.02855 1.69688 1.00057 1.32233 1.55755 0.86139 0.77353 0.85679 0.77151 1.20621 1.21926 1.21893 1.21721 0.98751 0.81786 0.97979 0.92574 0.92937 0.92645 0.92162 0.92108 0.91060 0.91181 0.89335 0.89237 0.91214 0.90179 0.91530 0.90989 0.92453 0.93188 0.91809 0.95990 0.96251 0.78107 0.93556 0.88035 0.91603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 9.91 37.16 0.37 -0.87 16 2 C -0.12 -1.01 5.93 -26.73 -0.16 -1.17 16 3 C -0.11 -1.17 4.50 -26.73 -0.12 -1.29 16 4 C -0.14 -1.42 4.05 -27.88 -0.11 -1.54 16 5 C 0.51 7.78 7.70 -10.98 -0.08 7.69 16 6 O -0.53 -10.89 15.40 5.55 0.09 -10.81 16 7 N -0.61 -8.66 2.97 -172.48 -0.51 -9.17 16 8 C 0.11 1.04 5.90 -3.49 -0.02 1.02 16 9 C -0.13 -1.27 5.64 -26.39 -0.15 -1.42 16 10 C -0.08 -1.05 2.71 -90.58 -0.25 -1.29 16 11 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 12 C -0.15 -1.73 8.11 37.16 0.30 -1.43 16 13 C -0.10 -1.68 2.15 -90.48 -0.19 -1.88 16 14 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 15 C 0.16 3.27 5.19 -4.05 -0.02 3.25 16 16 N -0.73 -19.26 5.38 -59.91 -0.32 -19.58 16 17 C -0.24 -6.95 9.99 -15.06 -0.15 -7.10 16 18 H 0.07 1.95 7.83 -52.49 -0.41 1.53 16 19 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 20 N -0.93 -29.36 13.06 55.49 0.72 -28.64 16 21 Si 0.91 23.08 29.55 -169.99 -5.02 18.06 16 22 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 23 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 24 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 25 C 0.12 2.06 5.04 -3.69 -0.02 2.04 16 26 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.07 0.90 8.10 -51.93 -0.42 0.48 16 32 H 0.07 0.86 8.10 -51.93 -0.42 0.44 16 33 H 0.09 0.72 7.93 -51.93 -0.41 0.31 16 34 H 0.09 0.76 7.70 -51.93 -0.40 0.36 16 35 H 0.07 0.63 6.69 -51.93 -0.35 0.28 16 36 H 0.08 0.59 5.93 -51.93 -0.31 0.28 16 37 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.06 0.66 4.97 -51.93 -0.26 0.40 16 40 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.06 0.80 6.57 -51.93 -0.34 0.46 16 42 H 0.02 0.45 6.72 -51.93 -0.35 0.10 16 43 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 44 H 0.38 10.86 6.89 -40.82 -0.28 10.58 16 45 H 0.25 7.76 8.31 -40.82 -0.34 7.42 16 46 H 0.10 2.22 6.21 -51.93 -0.32 1.90 16 47 H 0.07 1.10 6.70 -51.93 -0.35 0.76 16 LS Contribution 358.22 15.07 5.40 5.40 Total: -1.00 -33.93 358.22 -8.76 -42.69 By element: Atomic # 1 Polarization: 14.95 SS G_CDS: -8.40 Total: 6.54 kcal Atomic # 6 Polarization: -3.78 SS G_CDS: -0.70 Total: -4.48 kcal Atomic # 7 Polarization: -57.28 SS G_CDS: -0.11 Total: -57.39 kcal Atomic # 8 Polarization: -10.89 SS G_CDS: 0.09 Total: -10.81 kcal Atomic # 14 Polarization: 23.08 SS G_CDS: -5.02 Total: 18.06 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -33.93 -8.76 -42.69 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132670958.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.057 kcal (2) G-P(sol) polarization free energy of solvation -33.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds