Wall clock time and date at job start Tue Mar 31 2020 05:54:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.46821 * 2 1 4 4 C 1.53001 * 109.47143 * 180.02562 * 3 2 1 5 5 C 1.50698 * 109.47063 * 180.02562 * 4 3 2 6 6 O 1.21282 * 120.00035 * 359.97438 * 5 4 3 7 7 N 1.34778 * 119.99707 * 179.97438 * 5 4 3 8 8 C 1.46921 * 120.63351 * 359.97438 * 7 5 4 9 9 C 1.53191 * 108.77411 * 233.63167 * 8 7 5 10 10 C 1.53043 * 109.31132 * 305.35957 * 9 8 7 11 11 H 1.09002 * 109.46131 * 301.34824 * 10 9 8 12 12 C 1.53001 * 109.44748 * 181.37889 * 10 9 8 13 13 C 1.53046 * 109.53475 * 61.36818 * 10 9 8 14 14 H 1.08995 * 109.49919 * 58.61932 * 13 10 9 15 15 C 1.53006 * 109.49435 * 178.68408 * 13 10 9 16 16 N 1.46495 * 109.46960 * 185.00197 * 15 13 10 17 17 C 1.36936 * 119.99962 * 180.02562 * 16 15 13 18 18 H 1.07996 * 120.00154 * 359.97438 * 17 16 15 19 19 C 1.38815 * 120.00066 * 179.97438 * 17 16 15 20 20 N 1.31613 * 120.00067 * 179.97438 * 19 17 16 21 21 Si 1.86799 * 119.99963 * 359.97438 * 19 17 16 22 22 H 1.48504 * 109.47150 * 89.99707 * 21 19 17 23 23 H 1.48494 * 109.47551 * 209.99975 * 21 19 17 24 24 H 1.48501 * 109.47141 * 330.00183 * 21 19 17 25 25 C 1.46925 * 120.62854 * 179.97438 * 7 5 4 26 26 H 1.08997 * 109.47534 * 59.99785 * 1 2 3 27 27 H 1.09001 * 109.46633 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47035 * 299.99053 * 1 2 3 29 29 H 1.09001 * 109.46590 * 240.00766 * 2 1 3 30 30 H 1.08997 * 109.47534 * 120.00215 * 2 1 3 31 31 H 1.09005 * 109.47150 * 60.00507 * 3 2 1 32 32 H 1.08997 * 109.47242 * 300.00393 * 3 2 1 33 33 H 1.08996 * 109.46929 * 59.99718 * 4 3 2 34 34 H 1.09003 * 109.46629 * 299.99888 * 4 3 2 35 35 H 1.09002 * 109.58756 * 353.41101 * 8 7 5 36 36 H 1.09002 * 109.59282 * 113.83967 * 8 7 5 37 37 H 1.09004 * 109.49733 * 185.41012 * 9 8 7 38 38 H 1.08994 * 109.50132 * 65.31225 * 9 8 7 39 39 H 1.08992 * 109.47480 * 299.96774 * 12 10 9 40 40 H 1.08996 * 109.47171 * 59.97125 * 12 10 9 41 41 H 1.09008 * 109.46811 * 179.97438 * 12 10 9 42 42 H 1.09001 * 109.46991 * 304.99842 * 15 13 10 43 43 H 1.09000 * 109.47170 * 64.99839 * 15 13 10 44 44 H 0.97002 * 120.00280 * 359.97438 * 16 15 13 45 45 H 0.96999 * 119.99848 * 179.97438 * 20 19 17 46 46 H 1.09003 * 109.59222 * 6.58108 * 25 7 5 47 47 H 1.09006 * 109.70276 * 246.22737 * 25 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4426 -0.0006 5 6 4.0722 2.8634 0.0000 6 8 3.2840 3.7852 0.0004 7 7 5.3973 3.1097 0.0001 8 6 6.3643 2.0037 0.0002 9 6 7.3362 2.1986 1.1681 10 6 7.9706 3.5880 1.0722 11 1 8.4905 3.6848 0.1191 12 6 8.9676 3.7730 2.2179 13 6 6.8792 4.6566 1.1685 14 1 6.3430 4.5451 2.1108 15 6 7.5177 6.0457 1.1054 16 7 6.4883 7.0663 1.3171 17 6 6.8266 8.3931 1.3031 18 1 7.8523 8.6872 1.1365 19 6 5.8512 9.3603 1.5032 20 7 6.1764 10.6355 1.4903 21 14 4.0769 8.8518 1.7908 22 1 3.8436 8.6706 3.2462 23 1 3.1693 9.9061 1.2716 24 1 3.8072 7.5742 1.0835 25 6 5.9022 4.4895 0.0002 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3632 -1.0277 0.0005 28 1 -0.3633 0.5137 0.8900 29 1 1.8933 -0.5137 -0.8901 30 1 1.8934 -0.5138 0.8899 31 1 1.6766 1.9563 0.8901 32 1 1.6765 1.9564 -0.8899 33 1 3.9329 0.9289 -0.8908 34 1 3.9336 0.9287 0.8892 35 1 5.8368 1.0571 0.1180 36 1 6.9174 2.0017 -0.9391 37 1 8.1163 1.4386 1.1230 38 1 6.7953 2.1099 2.1103 39 1 8.4479 3.6763 3.1711 40 1 9.7452 3.0124 2.1492 41 1 9.4200 4.7624 2.1496 42 1 8.2790 6.1312 1.8809 43 1 7.9772 6.1903 0.1277 44 1 5.5670 6.8023 1.4665 45 1 5.4947 11.3113 1.6297 46 1 5.0697 5.1833 0.1178 47 1 6.4170 4.6925 -0.9390 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001132670959.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:30 Heat of formation + Delta-G solvation = -52.596562 kcal Electronic energy + Delta-G solvation = -23152.000503 eV Core-core repulsion = 19947.885630 eV Total energy + Delta-G solvation = -3204.114873 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.32916 -38.18247 -35.52978 -35.13030 -33.76207 -31.97982 -30.91135 -30.07842 -28.24920 -26.16612 -24.60432 -23.16889 -22.85622 -21.33401 -21.11263 -20.00177 -18.89231 -17.55319 -16.90214 -16.19205 -15.93322 -15.03601 -14.88476 -14.42889 -14.13477 -14.06375 -13.90663 -13.72365 -13.42505 -13.12357 -12.99090 -12.64608 -12.55234 -12.41838 -11.97367 -11.81172 -11.73302 -11.53774 -11.36575 -11.24589 -11.20806 -10.94707 -10.85043 -10.79634 -10.63950 -10.31975 -10.12752 -10.00608 -9.62857 -9.50541 -8.84026 -8.55453 -7.16595 -5.71438 -3.06639 2.68574 3.00974 3.46552 3.53616 3.56189 4.36947 4.57307 4.64710 4.67097 4.70887 4.77604 4.77919 4.96200 5.05158 5.08248 5.19560 5.23505 5.25245 5.43194 5.53813 5.55874 5.58963 5.59646 5.61042 5.66997 5.68550 5.73123 5.78233 5.86686 5.86943 5.91418 6.03814 6.04736 6.12939 6.17938 6.26297 6.36873 6.39766 6.56545 6.73987 6.79919 7.45376 8.04408 8.24960 8.47710 9.27041 10.00037 10.19383 11.46874 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.013697 B = 0.004889 C = 0.003736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2043.699746 B = 5725.506705 C = 7493.438899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.124 4.124 3 C -0.107 4.107 4 C -0.138 4.138 5 C 0.508 3.492 6 O -0.536 6.536 7 N -0.614 5.614 8 C 0.107 3.893 9 C -0.129 4.129 10 C -0.084 4.084 11 H 0.073 0.927 12 C -0.149 4.149 13 C -0.106 4.106 14 H 0.073 0.927 15 C 0.163 3.837 16 N -0.757 5.757 17 C -0.244 4.244 18 H 0.090 0.910 19 C 0.006 3.994 20 N -0.935 5.935 21 Si 0.879 3.121 22 H -0.285 1.285 23 H -0.291 1.291 24 H -0.272 1.272 25 C 0.117 3.883 26 H 0.055 0.945 27 H 0.052 0.948 28 H 0.055 0.945 29 H 0.060 0.940 30 H 0.061 0.939 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.082 0.918 36 H 0.068 0.932 37 H 0.074 0.926 38 H 0.066 0.934 39 H 0.053 0.947 40 H 0.050 0.950 41 H 0.066 0.934 42 H 0.036 0.964 43 H 0.026 0.974 44 H 0.362 0.638 45 H 0.259 0.741 46 H 0.097 0.903 47 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.347 -26.650 -2.896 26.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.161 4.161 3 C -0.145 4.145 4 C -0.178 4.178 5 C 0.296 3.704 6 O -0.413 6.413 7 N -0.347 5.347 8 C -0.016 4.016 9 C -0.168 4.168 10 C -0.103 4.103 11 H 0.091 0.909 12 C -0.206 4.206 13 C -0.125 4.125 14 H 0.091 0.909 15 C 0.035 3.965 16 N -0.403 5.403 17 C -0.374 4.374 18 H 0.108 0.892 19 C -0.190 4.190 20 N -0.583 5.583 21 Si 0.709 3.291 22 H -0.211 1.211 23 H -0.217 1.217 24 H -0.198 1.198 25 C -0.005 4.005 26 H 0.074 0.926 27 H 0.071 0.929 28 H 0.074 0.926 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.108 0.892 34 H 0.109 0.891 35 H 0.100 0.900 36 H 0.087 0.913 37 H 0.092 0.908 38 H 0.085 0.915 39 H 0.072 0.928 40 H 0.069 0.931 41 H 0.085 0.915 42 H 0.053 0.947 43 H 0.044 0.956 44 H 0.195 0.805 45 H 0.069 0.931 46 H 0.115 0.885 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -1.643 -25.941 -2.922 26.156 hybrid contribution -1.149 -0.213 0.239 1.193 sum -2.792 -26.154 -2.683 26.439 Atomic orbital electron populations 1.21764 0.95736 1.01416 1.02139 1.21540 0.96143 0.96633 1.01806 1.21402 0.92829 0.96482 1.03797 1.21712 0.98009 0.94169 1.03886 1.20760 0.81859 0.91720 0.76072 1.90743 1.54687 1.46552 1.49305 1.48227 1.05419 1.07693 1.73410 1.21747 0.91199 0.89605 0.99082 1.21993 0.98472 0.97714 0.98578 1.21076 0.95827 0.93636 0.99731 0.90903 1.21890 0.98461 1.02216 0.98029 1.21775 0.95922 0.96071 0.98770 0.90897 1.20710 0.91811 0.85355 0.98612 1.42780 1.05866 1.03116 1.88519 1.19038 0.96077 0.80662 1.41575 0.89237 1.24645 0.97474 0.95038 1.01821 1.69701 1.32889 0.98935 1.56798 0.86620 0.86412 0.77905 0.78176 1.21145 1.21689 1.19785 1.21721 0.98645 0.81890 0.98258 0.92633 0.92859 0.92619 0.92085 0.92068 0.91152 0.91180 0.89163 0.89127 0.89962 0.91322 0.90757 0.91511 0.92796 0.93107 0.91472 0.94664 0.95567 0.80536 0.93101 0.88517 0.91392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 9.91 37.16 0.37 -0.78 16 2 C -0.12 -0.93 5.93 -26.73 -0.16 -1.09 16 3 C -0.11 -1.08 4.50 -26.73 -0.12 -1.20 16 4 C -0.14 -1.31 4.05 -27.88 -0.11 -1.42 16 5 C 0.51 7.31 7.70 -10.99 -0.08 7.22 16 6 O -0.54 -10.39 15.39 5.56 0.09 -10.30 16 7 N -0.61 -8.10 2.97 -172.75 -0.51 -8.61 16 8 C 0.11 0.95 6.34 -3.71 -0.02 0.92 16 9 C -0.13 -1.16 5.36 -26.61 -0.14 -1.30 16 10 C -0.08 -0.96 2.23 -90.57 -0.20 -1.16 16 11 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 12 C -0.15 -1.65 8.82 37.16 0.33 -1.32 16 13 C -0.11 -1.63 1.92 -90.48 -0.17 -1.81 16 14 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 15 C 0.16 3.14 5.41 -4.04 -0.02 3.12 16 16 N -0.76 -18.66 5.18 -59.91 -0.31 -18.97 16 17 C -0.24 -7.12 10.47 -15.06 -0.16 -7.27 16 18 H 0.09 2.76 8.06 -52.49 -0.42 2.34 16 19 C 0.01 0.18 5.50 -17.43 -0.10 0.09 16 20 N -0.94 -30.25 13.97 55.49 0.78 -29.47 16 21 Si 0.88 23.53 27.73 -169.99 -4.71 18.82 16 22 H -0.28 -7.55 7.11 56.52 0.40 -7.15 16 23 H -0.29 -7.83 7.11 56.52 0.40 -7.43 16 24 H -0.27 -7.14 6.52 56.52 0.37 -6.77 16 25 C 0.12 1.89 5.52 -3.70 -0.02 1.87 16 26 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 27 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.07 0.83 8.10 -51.93 -0.42 0.40 16 32 H 0.07 0.80 8.10 -51.93 -0.42 0.38 16 33 H 0.09 0.66 7.94 -51.93 -0.41 0.25 16 34 H 0.09 0.69 7.69 -51.93 -0.40 0.29 16 35 H 0.08 0.53 5.93 -51.93 -0.31 0.22 16 36 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 39 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.07 0.83 6.29 -51.92 -0.33 0.51 16 42 H 0.04 0.68 6.14 -51.93 -0.32 0.36 16 43 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 44 H 0.36 9.00 4.76 -40.82 -0.19 8.81 16 45 H 0.26 7.99 8.31 -40.82 -0.34 7.65 16 46 H 0.10 1.96 6.22 -51.93 -0.32 1.63 16 47 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 LS Contribution 361.18 15.07 5.44 5.44 Total: -1.00 -34.77 361.18 -8.49 -43.25 By element: Atomic # 1 Polarization: 12.63 SS G_CDS: -8.63 Total: 3.99 kcal Atomic # 6 Polarization: -3.52 SS G_CDS: -0.62 Total: -4.14 kcal Atomic # 7 Polarization: -57.01 SS G_CDS: -0.05 Total: -57.06 kcal Atomic # 8 Polarization: -10.39 SS G_CDS: 0.09 Total: -10.30 kcal Atomic # 14 Polarization: 23.53 SS G_CDS: -4.71 Total: 18.82 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -34.77 -8.49 -43.25 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132670959.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.344 kcal (2) G-P(sol) polarization free energy of solvation -34.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds