Wall clock time and date at job start Tue Mar 31 2020 06:38:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.47175 * 2 1 4 4 C 1.52995 * 109.47316 * 179.97438 * 3 2 1 5 5 N 1.46499 * 109.47421 * 180.02562 * 4 3 2 6 6 C 1.37099 * 120.00161 * 265.56125 * 5 4 3 7 7 H 1.07997 * 120.00292 * 145.66260 * 6 5 4 8 8 C 1.38952 * 119.99786 * 325.67020 * 6 5 4 9 9 N 1.31413 * 119.99835 * 338.41260 * 8 6 5 10 10 Si 1.86793 * 119.99983 * 158.41272 * 8 6 5 11 11 H 1.48499 * 109.47444 * 60.00104 * 10 8 6 12 12 H 1.48507 * 109.47230 * 179.97438 * 10 8 6 13 13 H 1.48496 * 109.47389 * 299.99574 * 10 8 6 14 14 C 1.34775 * 120.00173 * 85.55591 * 5 4 3 15 15 O 1.21293 * 119.99992 * 0.02562 * 14 5 4 16 16 C 1.50707 * 120.00211 * 180.02562 * 14 5 4 17 17 C 1.52994 * 109.46977 * 180.02562 * 16 14 5 18 18 N 1.46911 * 109.46947 * 179.97438 * 17 16 14 19 19 C 1.46851 * 110.99661 * 45.79219 * 18 17 16 20 20 C 1.53032 * 109.52293 * 185.83957 * 19 18 17 21 21 C 1.53120 * 109.27779 * 300.82314 * 20 19 18 22 22 C 1.53116 * 109.16231 * 57.65070 * 21 20 19 23 23 C 1.46849 * 110.99954 * 169.99932 * 18 17 16 24 24 H 1.09000 * 109.47015 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.46661 * 299.99712 * 1 2 3 26 26 H 1.08991 * 109.47133 * 59.99782 * 1 2 3 27 27 H 1.08999 * 109.47380 * 240.00192 * 2 1 3 28 28 H 1.09003 * 109.46903 * 119.99872 * 2 1 3 29 29 H 1.09007 * 109.47024 * 60.00074 * 3 2 1 30 30 H 1.08996 * 109.47205 * 300.00622 * 3 2 1 31 31 H 1.08999 * 109.47304 * 60.00153 * 4 3 2 32 32 H 1.09007 * 109.47267 * 300.00104 * 4 3 2 33 33 H 0.97002 * 120.00123 * 180.02562 * 9 8 6 34 34 H 1.08997 * 109.46960 * 59.99847 * 16 14 5 35 35 H 1.09003 * 109.46705 * 300.00204 * 16 14 5 36 36 H 1.09005 * 109.47314 * 60.00316 * 17 16 14 37 37 H 1.08995 * 109.47551 * 299.99885 * 17 16 14 38 38 H 1.08999 * 109.46354 * 65.81971 * 19 18 17 39 39 H 1.08997 * 109.46214 * 305.85434 * 19 18 17 40 40 H 1.08997 * 109.50702 * 180.87824 * 20 19 18 41 41 H 1.09000 * 109.50367 * 60.76027 * 20 19 18 42 42 H 1.08998 * 109.52712 * 177.56279 * 21 20 19 43 43 H 1.09004 * 109.52005 * 297.74687 * 21 20 19 44 44 H 1.08998 * 109.50383 * 62.29115 * 22 21 20 45 45 H 1.09007 * 109.50117 * 182.40630 * 22 21 20 46 46 H 1.08996 * 109.45889 * 54.14612 * 23 18 17 47 47 H 1.08994 * 109.46322 * 294.18104 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0584 2.8237 0.0013 6 6 4.3740 3.4397 -1.1822 7 1 4.1971 4.4981 -1.3040 8 6 4.9215 2.7023 -2.2249 9 7 5.5242 1.5611 -1.9769 10 14 4.8006 3.3330 -3.9789 11 1 5.4765 4.6514 -4.0786 12 1 5.4584 2.3694 -4.8979 13 1 3.3716 3.4796 -4.3550 14 6 4.1973 3.4889 1.1652 15 8 3.9184 2.9438 2.2122 16 6 4.6991 4.9099 1.1658 17 6 4.7638 5.4273 2.6041 18 7 5.2536 6.8123 2.6048 19 6 4.5751 7.6109 1.5760 20 6 5.2095 9.0018 1.5072 21 6 5.0846 9.6825 2.8731 22 6 5.7571 8.8071 3.9342 23 6 5.1068 7.4219 3.9327 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8901 26 1 -0.3633 0.5138 -0.8899 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.6767 1.9563 0.8901 30 1 1.6767 1.9563 -0.8899 31 1 3.9338 0.9286 -0.8891 32 1 3.9330 0.9288 0.8909 33 1 5.9067 1.0465 -2.7047 34 1 4.0211 5.5349 0.5846 35 1 5.6944 4.9439 0.7226 36 1 5.4422 4.8022 3.1850 37 1 3.7688 5.3932 3.0477 38 1 3.5188 7.7055 1.8277 39 1 4.6751 7.1179 0.6090 40 1 4.6955 9.5994 0.7544 41 1 6.2626 8.9087 1.2419 42 1 5.5734 10.6562 2.8409 43 1 4.0310 9.8109 3.1211 44 1 6.8188 8.7110 3.7072 45 1 5.6342 9.2657 4.9154 46 1 5.5929 6.7916 4.6773 47 1 4.0480 7.5173 4.1734 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001142914370.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:12 Heat of formation + Delta-G solvation = -56.840089 kcal Electronic energy + Delta-G solvation = -23154.710777 eV Core-core repulsion = 19950.411891 eV Total energy + Delta-G solvation = -3204.298886 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.15141 -38.27678 -35.42203 -33.92011 -33.82706 -31.48529 -30.89123 -29.74712 -28.09450 -24.98778 -24.72071 -23.05331 -22.72966 -21.06357 -20.28438 -19.55745 -18.93655 -16.87747 -16.19232 -15.33935 -15.02681 -14.73871 -14.64264 -14.51879 -14.28133 -14.08826 -13.76531 -13.34361 -13.23002 -12.99515 -12.43668 -12.19466 -12.18378 -11.95885 -11.85363 -11.36427 -11.28948 -11.15340 -11.12178 -10.86761 -10.76924 -10.59133 -10.51298 -10.41684 -10.31990 -10.27520 -10.18253 -9.96994 -9.69492 -9.06405 -8.36701 -8.02076 -7.50309 -6.37322 -4.04604 3.11599 3.20349 3.22056 3.92952 4.06477 4.14746 4.79833 4.88503 4.92481 4.97590 5.04300 5.30338 5.47157 5.50006 5.55123 5.60320 5.67250 5.67966 5.69666 5.72200 5.87333 5.92761 5.95726 6.04596 6.09071 6.15426 6.18132 6.21899 6.25670 6.35085 6.40707 6.42394 6.48434 6.60969 6.67008 6.74765 6.77625 6.86653 7.15812 7.36011 7.39321 7.39768 7.52077 7.94657 8.38355 9.08128 9.54736 9.98285 10.63697 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.014677 B = 0.004654 C = 0.003854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1907.319693 B = 6015.401282 C = 7263.257920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.119 4.119 3 C -0.127 4.127 4 C 0.113 3.887 5 N -0.438 5.438 6 C -0.339 4.339 7 H 0.089 0.911 8 C 0.044 3.956 9 N -0.857 5.857 10 Si 0.912 3.088 11 H -0.272 1.272 12 H -0.284 1.284 13 H -0.273 1.273 14 C 0.468 3.532 15 O -0.610 6.610 16 C -0.120 4.120 17 C 0.076 3.924 18 N -0.539 5.539 19 C 0.046 3.954 20 C -0.117 4.117 21 C -0.121 4.121 22 C -0.116 4.116 23 C 0.056 3.944 24 H 0.047 0.953 25 H 0.050 0.950 26 H 0.050 0.950 27 H 0.059 0.941 28 H 0.057 0.943 29 H 0.051 0.949 30 H 0.057 0.943 31 H 0.107 0.893 32 H 0.050 0.950 33 H 0.270 0.730 34 H 0.078 0.922 35 H 0.093 0.907 36 H 0.078 0.922 37 H 0.034 0.966 38 H 0.028 0.972 39 H 0.087 0.913 40 H 0.063 0.937 41 H 0.070 0.930 42 H 0.059 0.941 43 H 0.056 0.944 44 H 0.070 0.930 45 H 0.061 0.939 46 H 0.072 0.928 47 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.822 8.981 4.132 10.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.157 4.157 3 C -0.166 4.166 4 C -0.010 4.010 5 N -0.155 5.155 6 C -0.467 4.467 7 H 0.106 0.894 8 C -0.162 4.162 9 N -0.494 5.494 10 Si 0.738 3.262 11 H -0.197 1.197 12 H -0.209 1.209 13 H -0.199 1.199 14 C 0.257 3.743 15 O -0.497 6.497 16 C -0.160 4.160 17 C -0.052 4.052 18 N -0.264 5.264 19 C -0.082 4.082 20 C -0.155 4.155 21 C -0.159 4.159 22 C -0.154 4.154 23 C -0.072 4.072 24 H 0.066 0.934 25 H 0.069 0.931 26 H 0.069 0.931 27 H 0.077 0.923 28 H 0.076 0.924 29 H 0.070 0.930 30 H 0.075 0.925 31 H 0.125 0.875 32 H 0.069 0.931 33 H 0.080 0.920 34 H 0.096 0.904 35 H 0.112 0.888 36 H 0.097 0.903 37 H 0.052 0.948 38 H 0.047 0.953 39 H 0.105 0.895 40 H 0.081 0.919 41 H 0.089 0.911 42 H 0.078 0.922 43 H 0.074 0.926 44 H 0.089 0.911 45 H 0.080 0.920 46 H 0.091 0.909 47 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -2.349 8.524 4.396 9.875 hybrid contribution -0.889 0.271 -0.862 1.268 sum -3.238 8.795 3.533 10.016 Atomic orbital electron populations 1.21758 0.96697 1.00646 1.01437 1.21429 0.94915 0.97806 1.01582 1.21900 0.98074 0.95426 1.01196 1.21433 0.90974 0.85068 1.03549 1.43469 1.55212 1.11995 1.04826 1.19368 1.41883 0.95323 0.90102 0.89365 1.25310 0.94234 0.96336 1.00319 1.69924 1.31545 1.14952 1.32958 0.86240 0.78714 0.78841 0.82363 1.19686 1.20897 1.19861 1.20362 0.81399 0.88837 0.83722 1.90512 1.56657 1.70723 1.31838 1.21460 1.03375 0.94945 0.96219 1.21833 0.98762 0.87262 0.97335 1.62012 1.57552 1.02392 1.04458 1.22238 0.95215 0.93817 0.96962 1.21595 1.01912 0.95298 0.96659 1.21580 1.00340 0.98345 0.95590 1.21578 1.00755 0.94665 0.98356 1.22043 0.98478 0.95479 0.91217 0.93431 0.93125 0.93068 0.92262 0.92422 0.93001 0.92459 0.87505 0.93139 0.91980 0.90401 0.88846 0.90332 0.94763 0.95337 0.89507 0.91858 0.91093 0.92189 0.92560 0.91138 0.91990 0.90911 0.95290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.14 9.91 37.16 0.37 -1.77 16 2 C -0.12 -2.05 5.93 -26.73 -0.16 -2.21 16 3 C -0.13 -2.64 5.51 -26.73 -0.15 -2.79 16 4 C 0.11 2.74 4.92 -4.04 -0.02 2.72 16 5 N -0.44 -11.04 2.55 -114.81 -0.29 -11.33 16 6 C -0.34 -8.49 8.70 -14.93 -0.13 -8.62 16 7 H 0.09 2.10 6.98 -52.49 -0.37 1.73 16 8 C 0.04 1.10 4.94 -17.47 -0.09 1.01 16 9 N -0.86 -22.46 11.31 55.50 0.63 -21.83 16 10 Si 0.91 19.21 29.60 -169.99 -5.03 14.18 16 11 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 12 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 13 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 14 C 0.47 11.48 7.61 -10.98 -0.08 11.39 16 15 O -0.61 -16.21 15.63 5.55 0.09 -16.13 16 16 C -0.12 -2.43 3.61 -27.88 -0.10 -2.53 16 17 C 0.08 1.38 4.56 -3.82 -0.02 1.36 16 18 N -0.54 -8.37 4.81 -234.67 -1.13 -9.50 16 19 C 0.05 0.65 4.85 -3.83 -0.02 0.63 16 20 C -0.12 -1.37 6.09 -26.65 -0.16 -1.53 16 21 C -0.12 -1.27 6.00 -26.61 -0.16 -1.43 16 22 C -0.12 -1.27 6.09 -26.65 -0.16 -1.43 16 23 C 0.06 0.74 5.42 -3.84 -0.02 0.72 16 24 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 26 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 27 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 28 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 29 H 0.05 1.13 8.14 -51.92 -0.42 0.70 16 30 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 31 H 0.11 2.72 5.34 -51.93 -0.28 2.44 16 32 H 0.05 1.28 7.56 -51.92 -0.39 0.88 16 33 H 0.27 6.69 8.31 -40.82 -0.34 6.35 16 34 H 0.08 1.48 5.71 -51.93 -0.30 1.19 16 35 H 0.09 1.95 8.10 -51.93 -0.42 1.53 16 36 H 0.08 1.52 8.10 -51.93 -0.42 1.10 16 37 H 0.03 0.65 8.04 -51.93 -0.42 0.23 16 38 H 0.03 0.41 8.14 -51.93 -0.42 -0.02 16 39 H 0.09 1.31 5.81 -51.93 -0.30 1.00 16 40 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 42 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 43 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 44 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 45 H 0.06 0.58 8.14 -51.92 -0.42 0.15 16 46 H 0.07 0.94 8.12 -51.93 -0.42 0.52 16 47 H 0.03 0.39 8.14 -51.93 -0.42 -0.04 16 LS Contribution 363.57 15.07 5.48 5.48 Total: -1.00 -28.00 363.57 -9.95 -37.95 By element: Atomic # 1 Polarization: 14.46 SS G_CDS: -8.79 Total: 5.67 kcal Atomic # 6 Polarization: -3.58 SS G_CDS: -0.90 Total: -4.48 kcal Atomic # 7 Polarization: -41.88 SS G_CDS: -0.79 Total: -42.67 kcal Atomic # 8 Polarization: -16.21 SS G_CDS: 0.09 Total: -16.13 kcal Atomic # 14 Polarization: 19.21 SS G_CDS: -5.03 Total: 14.18 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -28.00 -9.95 -37.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001142914370.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.895 kcal (2) G-P(sol) polarization free energy of solvation -27.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds