Wall clock time and date at job start Tue Mar 31 2020 06:02:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47092 * 2 1 4 4 C 1.53001 * 109.47092 * 179.97438 * 3 2 1 5 5 H 1.09004 * 115.55943 * 29.31471 * 4 3 2 6 6 C 1.52997 * 117.49954 * 243.62144 * 4 3 2 7 7 C 1.52999 * 117.50002 * 174.99659 * 4 3 2 8 8 H 1.09003 * 117.51970 * 0.02562 * 7 4 3 9 9 C 1.50707 * 117.50217 * 214.97982 * 7 4 3 10 10 O 1.21274 * 119.99508 * 359.97438 * 9 7 4 11 11 N 1.34773 * 119.99968 * 179.97438 * 9 7 4 12 12 C 1.46492 * 120.00052 * 180.02562 * 11 9 7 13 13 C 1.53003 * 109.47423 * 180.02562 * 12 11 9 14 14 H 1.08993 * 109.47094 * 65.00193 * 13 12 11 15 15 C 1.52998 * 109.47060 * 184.99960 * 13 12 11 16 16 N 1.46502 * 109.46955 * 304.99689 * 13 12 11 17 17 C 1.36942 * 119.99633 * 119.99815 * 16 13 12 18 18 H 1.08003 * 119.99626 * 30.59156 * 17 16 13 19 19 C 1.38807 * 119.99924 * 210.59519 * 17 16 13 20 20 N 1.31624 * 120.00231 * 38.80538 * 19 17 16 21 21 Si 1.86798 * 119.99895 * 218.80447 * 19 17 16 22 22 H 1.48496 * 109.47342 * 270.00129 * 21 19 17 23 23 H 1.48500 * 109.47262 * 30.00093 * 21 19 17 24 24 H 1.48499 * 109.47148 * 149.99879 * 21 19 17 25 25 C 1.46500 * 120.00349 * 300.00282 * 16 13 12 26 26 C 1.52998 * 109.46639 * 268.24690 * 25 16 13 27 27 H 1.08997 * 109.46646 * 299.99828 * 1 2 3 28 28 H 1.08995 * 109.46904 * 59.99821 * 1 2 3 29 29 H 1.08999 * 109.46891 * 179.97438 * 1 2 3 30 30 H 1.09008 * 109.47336 * 240.00052 * 2 1 3 31 31 H 1.09000 * 109.47583 * 119.99995 * 2 1 3 32 32 H 1.08996 * 109.47287 * 59.99985 * 3 2 1 33 33 H 1.09004 * 109.47248 * 300.00065 * 3 2 1 34 34 H 1.09006 * 117.49718 * 145.02357 * 6 4 3 35 35 H 1.08990 * 117.49974 * 0.02562 * 6 4 3 36 36 H 0.97007 * 119.99940 * 0.02562 * 11 9 7 37 37 H 1.09000 * 109.47395 * 60.00102 * 12 11 9 38 38 H 1.09003 * 109.47470 * 300.00168 * 12 11 9 39 39 H 1.09006 * 109.47147 * 180.02562 * 15 13 12 40 40 H 1.08998 * 109.47254 * 300.00013 * 15 13 12 41 41 H 1.09001 * 109.47574 * 60.00080 * 15 13 12 42 42 H 0.96996 * 120.00057 * 5.84729 * 20 19 17 43 43 H 1.08995 * 109.46783 * 28.24643 * 25 16 13 44 44 H 1.09004 * 109.46906 * 148.24838 * 25 16 13 45 45 H 1.09007 * 109.46974 * 180.02562 * 26 25 16 46 46 H 1.09004 * 109.47277 * 299.99564 * 26 25 16 47 47 H 1.08999 * 109.47381 * 59.99918 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 4.0405 0.5850 -0.4805 6 6 4.2759 2.0456 1.2167 7 6 4.2765 2.7944 -0.1176 8 1 3.6517 3.6841 -0.1955 9 6 5.5697 2.8386 -0.8902 10 8 6.0126 1.8260 -1.3895 11 7 6.2339 4.0034 -1.0263 12 6 7.4907 4.0464 -1.7778 13 6 8.0350 5.4764 -1.7799 14 1 8.2973 5.7667 -0.7626 15 6 9.2793 5.5471 -2.6673 16 7 7.0122 6.3874 -2.2996 17 6 6.5440 7.4091 -1.5171 18 1 7.1904 7.8665 -0.7827 19 6 5.2388 7.8568 -1.6679 20 7 4.2695 6.9954 -1.8935 21 14 4.8580 9.6818 -1.5507 22 1 4.5528 10.0342 -0.1408 23 1 6.0329 10.4634 -2.0131 24 1 3.6854 9.9986 -2.4051 25 6 6.4901 6.2055 -3.6563 26 6 7.3141 7.0430 -4.6363 27 1 -0.3632 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5139 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.6767 1.9563 0.8899 33 1 1.6766 1.9563 -0.8900 34 1 5.2110 1.5849 1.5356 35 1 3.6505 2.4420 2.0163 36 1 5.8798 4.8132 -0.6267 37 1 7.3120 3.7239 -2.8035 38 1 8.2171 3.3823 -1.3095 39 1 9.6674 6.5657 -2.6684 40 1 10.0403 4.8692 -2.2807 41 1 9.0171 5.2567 -3.6847 42 1 4.4518 6.0430 -1.8702 43 1 6.5560 5.1532 -3.9328 44 1 5.4488 6.5257 -3.6908 45 1 6.9254 6.9079 -5.6457 46 1 7.2482 8.0953 -4.3597 47 1 8.3554 6.7227 -4.6017 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001155149729.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:16 Heat of formation + Delta-G solvation = -20.592698 kcal Electronic energy + Delta-G solvation = -23223.111719 eV Core-core repulsion = 20020.384637 eV Total energy + Delta-G solvation = -3202.727081 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.60085 -37.56540 -36.62032 -33.91830 -33.76967 -32.22723 -30.58073 -28.36311 -27.64338 -26.09659 -23.87884 -22.97360 -21.93777 -21.78757 -20.45128 -19.51577 -19.09455 -17.47592 -16.76870 -15.58579 -15.40856 -15.22718 -14.68625 -14.23888 -14.02267 -13.66957 -13.57994 -13.28317 -13.00749 -12.68551 -12.55316 -12.22357 -12.13482 -11.91643 -11.87203 -11.70874 -11.58867 -11.31696 -11.01961 -10.87008 -10.84138 -10.74311 -10.54504 -10.21837 -10.08602 -10.07987 -9.84635 -9.81264 -9.48582 -9.32405 -8.42664 -8.28932 -6.96875 -6.22150 -3.31801 2.95767 3.44261 3.51935 3.66257 3.71185 4.05442 4.51380 4.70587 4.91430 4.95970 5.05963 5.10539 5.15885 5.29865 5.33009 5.50414 5.53298 5.57621 5.71299 5.78274 5.80041 5.83321 5.87372 5.99445 6.03162 6.08484 6.09326 6.15391 6.19703 6.23869 6.27610 6.29949 6.46365 6.47071 6.50997 6.70661 6.73996 6.83655 7.09641 7.12106 7.33339 8.04477 8.19899 8.48213 8.80097 9.02621 9.74932 10.23220 10.99633 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.015225 B = 0.004645 C = 0.003923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1838.689563 B = 6026.812200 C = 7136.089066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.121 4.121 3 C -0.091 4.091 4 C -0.119 4.119 5 H 0.114 0.886 6 C -0.151 4.151 7 C -0.184 4.184 8 H 0.126 0.874 9 C 0.539 3.461 10 O -0.565 6.565 11 N -0.700 5.700 12 C 0.105 3.895 13 C 0.155 3.845 14 H 0.069 0.931 15 C -0.156 4.156 16 N -0.584 5.584 17 C -0.372 4.372 18 H 0.052 0.948 19 C -0.005 4.005 20 N -0.884 5.884 21 Si 1.045 2.955 22 H -0.295 1.295 23 H -0.292 1.292 24 H -0.287 1.287 25 C 0.135 3.865 26 C -0.165 4.165 27 H 0.053 0.947 28 H 0.054 0.946 29 H 0.051 0.949 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.065 0.935 33 H 0.069 0.931 34 H 0.095 0.905 35 H 0.101 0.899 36 H 0.415 0.585 37 H 0.056 0.944 38 H 0.052 0.948 39 H 0.057 0.943 40 H 0.043 0.957 41 H 0.053 0.947 42 H 0.271 0.729 43 H 0.027 0.973 44 H 0.071 0.929 45 H 0.032 0.968 46 H 0.052 0.948 47 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.458 -8.636 3.600 9.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.158 4.158 3 C -0.128 4.128 4 C -0.137 4.137 5 H 0.132 0.868 6 C -0.189 4.189 7 C -0.205 4.205 8 H 0.144 0.856 9 C 0.325 3.675 10 O -0.445 6.445 11 N -0.350 5.350 12 C -0.022 4.022 13 C 0.047 3.953 14 H 0.087 0.913 15 C -0.216 4.216 16 N -0.306 5.306 17 C -0.500 4.500 18 H 0.070 0.930 19 C -0.211 4.211 20 N -0.522 5.522 21 Si 0.875 3.125 22 H -0.222 1.222 23 H -0.219 1.219 24 H -0.213 1.213 25 C 0.009 3.991 26 C -0.225 4.225 27 H 0.072 0.928 28 H 0.073 0.927 29 H 0.071 0.929 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.083 0.917 33 H 0.088 0.912 34 H 0.113 0.887 35 H 0.119 0.881 36 H 0.252 0.748 37 H 0.074 0.926 38 H 0.070 0.930 39 H 0.076 0.924 40 H 0.062 0.938 41 H 0.072 0.928 42 H 0.081 0.919 43 H 0.045 0.955 44 H 0.089 0.911 45 H 0.051 0.949 46 H 0.071 0.929 47 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -2.346 -8.172 3.105 9.052 hybrid contribution 1.179 -0.488 0.220 1.295 sum -1.168 -8.661 3.325 9.350 Atomic orbital electron populations 1.21782 0.96010 1.01373 1.01877 1.21494 0.95519 0.96721 1.02103 1.21242 0.92149 0.97023 1.02409 1.22379 0.94478 0.95787 1.01104 0.86754 1.23046 1.02794 1.02497 0.90543 1.22328 0.98124 0.98700 1.01360 0.85617 1.19597 0.84566 0.83348 0.79985 1.90612 1.69208 1.34507 1.50188 1.45868 1.24108 1.10990 1.54068 1.21927 0.85256 0.99409 0.95577 1.20758 0.89801 0.87619 0.97104 0.91282 1.22255 0.97804 1.01193 1.00328 1.43982 1.44986 1.31670 1.09917 1.19730 0.96591 1.11827 1.21828 0.93044 1.25629 0.91053 1.05324 0.99096 1.70812 1.32297 1.03744 1.45308 0.83865 0.75431 0.76784 0.76414 1.22211 1.21873 1.21266 1.20807 0.98854 0.95439 0.83952 1.22368 1.00148 1.02014 0.97930 0.92801 0.92674 0.92945 0.91920 0.91995 0.91662 0.91247 0.88688 0.88077 0.74792 0.92552 0.92952 0.92385 0.93777 0.92837 0.91876 0.95455 0.91137 0.94864 0.92881 0.93719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 9.91 37.16 0.37 -1.00 16 2 C -0.12 -1.22 5.89 -26.73 -0.16 -1.38 16 3 C -0.09 -1.06 5.50 -26.73 -0.15 -1.21 16 4 C -0.12 -1.65 5.25 -90.62 -0.48 -2.12 16 5 H 0.11 1.73 7.60 -51.93 -0.39 1.33 16 6 C -0.15 -2.00 9.88 -26.73 -0.26 -2.27 16 7 C -0.18 -2.97 5.91 -91.77 -0.54 -3.51 16 8 H 0.13 2.08 8.14 -51.93 -0.42 1.65 16 9 C 0.54 10.45 7.61 -10.98 -0.08 10.37 16 10 O -0.56 -12.31 16.26 5.56 0.09 -12.22 16 11 N -0.70 -13.76 5.39 -60.30 -0.32 -14.08 16 12 C 0.10 1.99 4.92 -4.04 -0.02 1.97 16 13 C 0.16 3.00 2.87 -67.93 -0.20 2.81 16 14 H 0.07 1.37 7.89 -51.93 -0.41 0.96 16 15 C -0.16 -2.62 8.17 37.16 0.30 -2.32 16 16 N -0.58 -13.08 1.72 -165.66 -0.29 -13.37 16 17 C -0.37 -9.37 8.93 -15.06 -0.13 -9.51 16 18 H 0.05 1.35 8.05 -52.48 -0.42 0.92 16 19 C -0.01 -0.14 4.53 -17.43 -0.08 -0.22 16 20 N -0.88 -23.87 12.21 55.49 0.68 -23.20 16 21 Si 1.05 23.78 30.05 -169.99 -5.11 18.67 16 22 H -0.29 -6.56 7.11 56.52 0.40 -6.15 16 23 H -0.29 -6.54 7.11 56.52 0.40 -6.13 16 24 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 25 C 0.14 3.01 5.20 -4.04 -0.02 2.99 16 26 C -0.17 -3.27 9.98 37.16 0.37 -2.90 16 27 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 28 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 29 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.65 8.14 -51.92 -0.42 0.23 16 31 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.06 0.71 7.87 -51.93 -0.41 0.30 16 33 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.09 1.27 8.14 -51.93 -0.42 0.84 16 35 H 0.10 1.15 8.03 -51.93 -0.42 0.73 16 36 H 0.41 8.68 7.36 -40.82 -0.30 8.38 16 37 H 0.06 1.14 6.87 -51.93 -0.36 0.78 16 38 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 39 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 40 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 41 H 0.05 0.90 6.31 -51.93 -0.33 0.57 16 42 H 0.27 7.21 7.49 -40.82 -0.31 6.90 16 43 H 0.03 0.59 6.53 -51.93 -0.34 0.25 16 44 H 0.07 1.79 5.67 -51.93 -0.29 1.49 16 45 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 46 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 47 H 0.04 0.82 5.63 -51.93 -0.29 0.52 16 LS Contribution 372.65 15.07 5.62 5.62 Total: -1.00 -27.70 372.65 -8.97 -36.67 By element: Atomic # 1 Polarization: 18.77 SS G_CDS: -8.56 Total: 10.21 kcal Atomic # 6 Polarization: -7.22 SS G_CDS: -1.08 Total: -8.30 kcal Atomic # 7 Polarization: -50.71 SS G_CDS: 0.07 Total: -50.64 kcal Atomic # 8 Polarization: -12.31 SS G_CDS: 0.09 Total: -12.22 kcal Atomic # 14 Polarization: 23.78 SS G_CDS: -5.11 Total: 18.67 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -27.70 -8.97 -36.67 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155149729.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.079 kcal (2) G-P(sol) polarization free energy of solvation -27.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds