Wall clock time and date at job start Tue Mar 31 2020 05:53:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.47387 * 2 1 4 4 C 1.53007 * 109.46829 * 119.99707 * 2 1 3 5 5 C 1.50700 * 109.46858 * 65.95901 * 4 2 1 6 6 O 1.21283 * 120.00350 * 6.39354 * 5 4 2 7 7 N 1.34777 * 119.99789 * 186.40390 * 5 4 2 8 8 C 1.46925 * 120.63280 * 5.09402 * 7 5 4 9 9 C 1.53191 * 108.77741 * 233.59102 * 8 7 5 10 10 C 1.53042 * 109.31173 * 305.36479 * 9 8 7 11 11 C 1.53037 * 109.53765 * 61.36537 * 10 9 8 12 12 C 1.46929 * 120.62779 * 185.07827 * 7 5 4 13 13 H 1.08997 * 109.58851 * 246.33874 * 12 7 5 14 14 C 1.53000 * 109.59001 * 6.62034 * 12 7 5 15 15 N 1.46494 * 109.47549 * 177.50448 * 14 12 7 16 16 C 1.46505 * 120.00312 * 264.07401 * 15 14 12 17 17 C 1.36940 * 119.99621 * 84.06493 * 15 14 12 18 18 H 1.07993 * 120.00676 * 323.45713 * 17 15 14 19 19 C 1.38816 * 119.99784 * 143.45897 * 17 15 14 20 20 N 1.31620 * 120.00010 * 164.47152 * 19 17 15 21 21 Si 1.86808 * 119.99863 * 344.46969 * 19 17 15 22 22 H 1.48501 * 109.47238 * 91.64704 * 21 19 17 23 23 H 1.48493 * 109.47024 * 211.64500 * 21 19 17 24 24 H 1.48496 * 109.46948 * 331.64476 * 21 19 17 25 25 H 1.09004 * 109.46826 * 64.20779 * 1 2 3 26 26 H 1.09001 * 109.47308 * 184.20851 * 1 2 3 27 27 H 1.09007 * 109.47131 * 304.21076 * 1 2 3 28 28 H 1.08994 * 109.47214 * 239.99346 * 2 1 3 29 29 H 1.08998 * 109.46883 * 179.97438 * 3 2 1 30 30 H 1.08991 * 109.46939 * 299.99966 * 3 2 1 31 31 H 1.09004 * 109.46921 * 60.00083 * 3 2 1 32 32 H 1.08997 * 109.47023 * 305.96031 * 4 2 1 33 33 H 1.08992 * 109.46967 * 185.95435 * 4 2 1 34 34 H 1.09000 * 109.58510 * 353.38168 * 8 7 5 35 35 H 1.09005 * 109.58510 * 113.66132 * 8 7 5 36 36 H 1.08999 * 109.49904 * 65.31642 * 9 8 7 37 37 H 1.08996 * 109.49648 * 185.41763 * 9 8 7 38 38 H 1.09002 * 109.45986 * 181.38051 * 10 9 8 39 39 H 1.09001 * 109.46349 * 301.35971 * 10 9 8 40 40 H 1.09004 * 109.49814 * 178.68015 * 11 10 9 41 41 H 1.09000 * 109.49930 * 58.58485 * 11 10 9 42 42 H 1.08993 * 109.47119 * 297.51200 * 14 12 7 43 43 H 1.09006 * 109.46816 * 57.50420 * 14 12 7 44 44 H 1.08998 * 109.47141 * 83.99406 * 16 15 14 45 45 H 1.09000 * 109.46681 * 203.99586 * 16 15 14 46 46 H 1.08996 * 109.46603 * 323.99582 * 16 15 14 47 47 H 0.97001 * 119.99659 * 185.01547 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 1.2494 5 6 1.6616 -2.1782 1.1778 6 8 1.1485 -2.6229 0.1729 7 7 1.8933 -2.9871 2.2307 8 6 2.4105 -2.4425 3.4935 9 6 3.6691 -3.2217 3.8878 10 6 3.3452 -4.7167 3.9339 11 6 2.9006 -5.1870 2.5471 12 6 1.6332 -4.4301 2.1375 13 1 0.8138 -4.6976 2.8047 14 6 1.2618 -4.7926 0.6982 15 7 1.0612 -6.2401 0.5953 16 6 2.1554 -7.1007 0.1387 17 6 -0.1491 -6.7887 0.9261 18 1 -0.7194 -6.3829 1.7484 19 6 -0.6429 -7.8667 0.2042 20 7 -1.6328 -8.5857 0.6896 21 14 0.0974 -8.2969 -1.4561 22 1 1.1897 -9.2855 -1.2698 23 1 -0.9525 -8.8782 -2.3305 24 1 0.6436 -7.0689 -2.0876 25 1 -0.3633 0.4472 -0.9253 26 1 -0.3634 -1.0249 0.0754 27 1 -0.3634 0.5778 0.8499 28 1 1.8933 -0.5139 -0.8899 29 1 3.1301 1.4424 0.0005 30 1 1.6768 1.9563 -0.8899 31 1 1.6768 1.9563 0.8900 32 1 1.5921 -0.2727 2.1361 33 1 3.1247 -0.6298 1.3043 34 1 2.6586 -1.3892 3.3628 35 1 1.6551 -2.5460 4.2726 36 1 4.4535 -3.0418 3.1527 37 1 4.0080 -2.8925 4.8700 38 1 4.2329 -5.2714 4.2380 39 1 2.5435 -4.8927 4.6510 40 1 2.6926 -6.2566 2.5750 41 1 3.6922 -4.9887 1.8245 42 1 0.3425 -4.2776 0.4196 43 1 2.0659 -4.4886 0.0280 44 1 2.8048 -7.3402 0.9807 45 1 1.7447 -8.0209 -0.2767 46 1 2.7307 -6.5811 -0.6275 47 1 -1.9295 -9.3814 0.2208 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157470501.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:25 Heat of formation + Delta-G solvation = -9.905874 kcal Electronic energy + Delta-G solvation = -24168.439762 eV Core-core repulsion = 20966.176096 eV Total energy + Delta-G solvation = -3202.263666 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.36362 -37.57287 -35.78788 -35.35825 -32.70169 -32.01197 -30.66350 -28.32313 -27.11478 -26.82811 -25.59537 -24.34740 -22.65742 -21.15845 -20.45566 -19.87516 -18.60165 -16.99415 -16.33188 -15.73897 -15.62536 -15.24529 -14.61702 -14.31465 -14.14456 -13.93250 -13.69589 -13.32949 -13.22799 -13.04205 -12.88625 -12.35944 -12.29648 -12.17583 -12.10348 -11.89946 -11.64478 -11.37740 -11.08624 -10.93865 -10.86861 -10.77880 -10.64656 -10.54702 -10.41971 -10.31194 -10.05742 -9.75915 -9.50346 -8.70178 -8.44861 -8.19084 -6.68435 -5.82795 -3.30138 2.92438 3.23362 3.36923 3.54982 3.62290 4.60587 4.61116 4.70942 4.82307 4.87691 4.93810 5.05393 5.23037 5.30108 5.36475 5.40189 5.46463 5.49030 5.51028 5.53887 5.61173 5.68103 5.81746 5.85200 5.88973 5.92146 5.94499 6.07180 6.10555 6.16300 6.32376 6.33702 6.36115 6.43031 6.47898 6.53963 6.61566 6.72795 6.91487 6.94638 7.37160 7.74592 8.17993 8.44487 8.58427 9.12747 9.83588 10.24331 11.31023 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.016391 B = 0.005646 C = 0.004617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1707.879098 B = 4958.088092 C = 6063.087083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.082 4.082 3 C -0.146 4.146 4 C -0.136 4.136 5 C 0.508 3.492 6 O -0.521 6.521 7 N -0.609 5.609 8 C 0.107 3.893 9 C -0.133 4.133 10 C -0.121 4.121 11 C -0.122 4.122 12 C 0.125 3.875 13 H 0.071 0.929 14 C 0.163 3.837 15 N -0.614 5.614 16 C 0.106 3.894 17 C -0.260 4.260 18 H 0.079 0.921 19 C 0.026 3.974 20 N -0.914 5.914 21 Si 0.900 3.100 22 H -0.289 1.289 23 H -0.306 1.306 24 H -0.271 1.271 25 H 0.051 0.949 26 H 0.072 0.928 27 H 0.045 0.955 28 H 0.080 0.920 29 H 0.052 0.948 30 H 0.056 0.944 31 H 0.052 0.948 32 H 0.086 0.914 33 H 0.088 0.912 34 H 0.080 0.920 35 H 0.066 0.934 36 H 0.063 0.937 37 H 0.068 0.932 38 H 0.059 0.941 39 H 0.062 0.938 40 H 0.086 0.914 41 H 0.054 0.946 42 H 0.082 0.918 43 H 0.043 0.957 44 H 0.014 0.986 45 H 0.045 0.955 46 H 0.025 0.975 47 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.759 17.607 5.522 21.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.101 4.101 3 C -0.204 4.204 4 C -0.177 4.177 5 C 0.296 3.704 6 O -0.397 6.397 7 N -0.343 5.343 8 C -0.016 4.016 9 C -0.171 4.171 10 C -0.158 4.158 11 C -0.160 4.160 12 C 0.021 3.979 13 H 0.089 0.911 14 C 0.037 3.963 15 N -0.339 5.339 16 C -0.039 4.039 17 C -0.389 4.389 18 H 0.096 0.904 19 C -0.173 4.173 20 N -0.557 5.557 21 Si 0.733 3.267 22 H -0.218 1.218 23 H -0.235 1.235 24 H -0.196 1.196 25 H 0.070 0.930 26 H 0.091 0.909 27 H 0.065 0.935 28 H 0.098 0.902 29 H 0.071 0.929 30 H 0.075 0.925 31 H 0.072 0.928 32 H 0.104 0.896 33 H 0.106 0.894 34 H 0.098 0.902 35 H 0.084 0.916 36 H 0.082 0.918 37 H 0.087 0.913 38 H 0.078 0.922 39 H 0.081 0.919 40 H 0.104 0.896 41 H 0.073 0.927 42 H 0.100 0.900 43 H 0.062 0.938 44 H 0.032 0.968 45 H 0.064 0.936 46 H 0.043 0.957 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 11.312 17.275 4.897 21.222 hybrid contribution 0.536 -0.436 -0.576 0.900 sum 11.848 16.839 4.321 21.038 Atomic orbital electron populations 1.21901 0.94709 1.03290 1.00859 1.20879 0.96637 0.95013 0.97578 1.21856 1.00649 0.96101 1.01753 1.21827 1.02334 0.93067 1.00431 1.20637 0.78599 0.88117 0.83078 1.90776 1.42196 1.75282 1.31423 1.48367 1.64935 1.08723 1.12311 1.21692 0.95794 0.97666 0.86474 1.21900 0.97453 0.96452 1.01276 1.21549 1.01037 0.94914 0.98345 1.21940 0.97201 1.01578 0.95313 1.22263 0.96385 0.76621 1.02674 0.91131 1.21463 1.01288 0.83348 0.90232 1.44344 1.09629 1.01497 1.78398 1.21459 0.91059 0.94897 0.96441 1.18804 0.95070 1.14289 1.10764 0.90368 1.25460 0.95706 0.98605 0.97529 1.69755 1.29560 1.16361 1.40051 0.86648 0.76553 0.77913 0.85586 1.21808 1.23522 1.19617 0.93006 0.90863 0.93540 0.90200 0.92895 0.92533 0.92845 0.89585 0.89383 0.90215 0.91556 0.91803 0.91289 0.92232 0.91914 0.89563 0.92686 0.90034 0.93835 0.96818 0.93648 0.95678 0.92872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.81 8.99 37.16 0.33 -1.48 16 2 C -0.08 -0.91 2.56 -90.61 -0.23 -1.14 16 3 C -0.15 -1.22 9.19 37.16 0.34 -0.88 16 4 C -0.14 -1.45 3.61 -27.88 -0.10 -1.55 16 5 C 0.51 7.67 7.09 -10.98 -0.08 7.59 16 6 O -0.52 -9.97 9.85 5.55 0.05 -9.91 16 7 N -0.61 -8.91 2.97 -165.22 -0.49 -9.40 16 8 C 0.11 1.13 6.32 -3.71 -0.02 1.10 16 9 C -0.13 -1.32 6.08 -26.61 -0.16 -1.48 16 10 C -0.12 -1.50 5.88 -26.69 -0.16 -1.66 16 11 C -0.12 -1.96 4.52 -26.61 -0.12 -2.08 16 12 C 0.13 2.27 3.18 -67.60 -0.22 2.05 16 13 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 14 C 0.16 3.60 3.65 -4.05 -0.01 3.58 16 15 N -0.61 -15.39 2.12 -181.12 -0.38 -15.78 16 16 C 0.11 2.44 8.57 59.85 0.51 2.96 16 17 C -0.26 -7.56 9.99 -15.06 -0.15 -7.71 16 18 H 0.08 2.43 8.06 -52.49 -0.42 2.01 16 19 C 0.03 0.79 5.39 -17.43 -0.09 0.69 16 20 N -0.91 -28.88 13.96 55.49 0.77 -28.11 16 21 Si 0.90 23.88 24.68 -169.99 -4.20 19.69 16 22 H -0.29 -7.35 6.61 56.52 0.37 -6.98 16 23 H -0.31 -8.22 7.11 56.52 0.40 -7.82 16 24 H -0.27 -7.21 7.06 56.52 0.40 -6.81 16 25 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 26 H 0.07 1.11 6.21 -51.93 -0.32 0.79 16 27 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.08 1.03 7.82 -51.93 -0.41 0.62 16 29 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.09 0.76 7.38 -51.93 -0.38 0.38 16 33 H 0.09 0.79 8.11 -51.93 -0.42 0.36 16 34 H 0.08 0.63 5.90 -51.93 -0.31 0.33 16 35 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 40 H 0.09 1.59 6.21 -51.93 -0.32 1.27 16 41 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 42 H 0.08 2.02 6.25 -51.93 -0.32 1.70 16 43 H 0.04 0.97 6.93 -51.93 -0.36 0.61 16 44 H 0.01 0.29 6.51 -51.93 -0.34 -0.05 16 45 H 0.05 1.13 2.82 -51.93 -0.15 0.98 16 46 H 0.02 0.53 7.95 -51.93 -0.41 0.12 16 47 H 0.26 7.84 8.32 -40.82 -0.34 7.50 16 LS Contribution 345.58 15.07 5.21 5.21 Total: -1.00 -32.79 345.58 -7.60 -40.39 By element: Atomic # 1 Polarization: 6.31 SS G_CDS: -8.41 Total: -2.10 kcal Atomic # 6 Polarization: 0.16 SS G_CDS: -0.16 Total: 0.00 kcal Atomic # 7 Polarization: -53.18 SS G_CDS: -0.10 Total: -53.28 kcal Atomic # 8 Polarization: -9.97 SS G_CDS: 0.05 Total: -9.91 kcal Atomic # 14 Polarization: 23.88 SS G_CDS: -4.20 Total: 19.69 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -32.79 -7.60 -40.39 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157470501.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.483 kcal (2) G-P(sol) polarization free energy of solvation -32.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.389 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds