Wall clock time and date at job start Tue Mar 31 2020 05:53:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52994 * 109.47136 * 2 1 4 4 C 1.53011 * 109.46918 * 180.02562 * 3 2 1 5 5 C 1.50699 * 109.47003 * 180.02562 * 4 3 2 6 6 O 1.21279 * 119.99855 * 0.02562 * 5 4 3 7 7 N 1.34780 * 119.99775 * 179.97438 * 5 4 3 8 8 C 1.46929 * 120.62984 * 355.01437 * 7 5 4 9 9 C 1.53187 * 108.77052 * 233.58159 * 8 7 5 10 10 C 1.53042 * 109.31686 * 305.36326 * 9 8 7 11 11 C 1.53044 * 109.53421 * 61.37126 * 10 9 8 12 12 C 1.46924 * 120.62865 * 174.73056 * 7 5 4 13 13 H 1.09000 * 109.58567 * 246.20519 * 12 7 5 14 14 C 1.53001 * 109.58745 * 6.63021 * 12 7 5 15 15 N 1.46504 * 109.47104 * 181.24630 * 14 12 7 16 16 C 1.46497 * 119.99756 * 84.90542 * 15 14 12 17 17 C 1.36935 * 119.99874 * 264.90463 * 15 14 12 18 18 H 1.08007 * 119.99887 * 10.86184 * 17 15 14 19 19 C 1.38811 * 119.99956 * 190.86693 * 17 15 14 20 20 N 1.31618 * 120.00038 * 12.45597 * 19 17 15 21 21 Si 1.86800 * 119.99735 * 192.45818 * 19 17 15 22 22 H 1.48493 * 109.47596 * 359.97438 * 21 19 17 23 23 H 1.48499 * 109.47271 * 119.99998 * 21 19 17 24 24 H 1.48501 * 109.47015 * 239.99601 * 21 19 17 25 25 H 1.08998 * 109.47130 * 59.99161 * 1 2 3 26 26 H 1.09003 * 109.46378 * 299.99943 * 1 2 3 27 27 H 1.08997 * 109.47293 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47130 * 120.00839 * 2 1 3 29 29 H 1.09003 * 109.46378 * 240.00057 * 2 1 3 30 30 H 1.08998 * 109.47592 * 299.99918 * 3 2 1 31 31 H 1.09003 * 109.47441 * 60.00707 * 3 2 1 32 32 H 1.08998 * 109.46732 * 300.00211 * 4 3 2 33 33 H 1.09003 * 109.46677 * 60.00007 * 4 3 2 34 34 H 1.08998 * 109.58456 * 353.36791 * 8 7 5 35 35 H 1.09000 * 109.58517 * 113.65447 * 8 7 5 36 36 H 1.08999 * 109.50087 * 65.31890 * 9 8 7 37 37 H 1.08998 * 109.49557 * 185.41439 * 9 8 7 38 38 H 1.08999 * 109.46010 * 181.38768 * 10 9 8 39 39 H 1.08996 * 109.46170 * 301.36166 * 10 9 8 40 40 H 1.08994 * 109.50047 * 58.58522 * 11 10 9 41 41 H 1.09000 * 109.49629 * 178.65602 * 11 10 9 42 42 H 1.09005 * 109.47091 * 301.24653 * 14 12 7 43 43 H 1.08997 * 109.47241 * 61.24449 * 14 12 7 44 44 H 1.08993 * 109.47808 * 354.89096 * 16 15 14 45 45 H 1.09002 * 109.47114 * 114.89549 * 16 15 14 46 46 H 1.09002 * 109.46743 * 234.88715 * 16 15 14 47 47 H 0.97003 * 119.99540 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5701 1.4424 -0.0006 5 6 4.0725 2.8632 0.0000 6 8 3.2844 3.7850 0.0013 7 7 5.3976 3.1094 0.0001 8 6 6.3637 2.0078 0.1095 9 6 7.3179 2.3025 1.2711 10 6 7.9548 3.6789 1.0663 11 6 6.8629 4.7513 1.0544 12 6 5.9036 4.4839 -0.1154 13 1 6.4341 4.5998 -1.0605 14 6 4.7334 5.4679 -0.0568 15 7 5.2377 6.8357 -0.2020 16 6 5.4616 7.3959 -1.5369 17 6 5.4999 7.5904 0.9101 18 1 5.5050 7.1293 1.8868 19 6 5.7588 8.9481 0.7823 20 7 5.5155 9.5600 -0.3574 21 14 6.4526 9.9068 2.2276 22 1 6.6346 8.9946 3.3851 23 1 7.7629 10.4940 1.8489 24 1 5.5115 10.9941 2.5980 25 1 -0.3633 0.5140 -0.8899 26 1 -0.3632 0.5139 0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8934 -0.5140 0.8899 29 1 1.8933 -0.5139 -0.8900 30 1 1.6768 1.9563 -0.8899 31 1 1.6768 1.9563 0.8900 32 1 3.9338 0.9284 0.8891 33 1 3.9330 0.9286 -0.8909 34 1 5.8337 1.0745 0.2997 35 1 6.9292 1.9243 -0.8186 36 1 6.7627 2.2944 2.2090 37 1 8.0980 1.5418 1.3030 38 1 8.6528 3.8805 1.8788 39 1 8.4890 3.6942 0.1164 40 1 6.3120 4.7201 1.9943 41 1 7.3192 5.7337 0.9324 42 1 4.0350 5.2504 -0.8649 43 1 4.2229 5.3686 0.9011 44 1 5.2865 6.6259 -2.2882 45 1 4.7759 8.2271 -1.7018 46 1 6.4890 7.7518 -1.6140 47 1 5.6968 10.5087 -0.4468 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157561495.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:30 Heat of formation + Delta-G solvation = -16.569420 kcal Electronic energy + Delta-G solvation = -23737.855954 eV Core-core repulsion = 20535.303335 eV Total energy + Delta-G solvation = -3202.552619 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.22263 -37.28778 -35.59671 -35.19046 -32.65308 -32.06270 -30.42979 -29.80412 -26.46017 -25.80417 -24.80448 -24.03570 -22.31660 -21.26380 -20.49339 -20.15831 -18.56608 -16.77902 -16.26324 -15.98195 -15.60939 -14.87793 -14.61518 -14.26984 -14.00949 -13.84163 -13.54590 -13.47156 -13.11825 -13.04285 -12.60895 -12.39853 -12.29665 -12.18299 -11.60323 -11.43137 -11.22851 -11.07477 -11.04636 -10.93350 -10.74040 -10.65737 -10.62910 -10.50011 -10.34905 -10.20384 -9.99123 -9.77727 -9.63243 -8.75528 -8.43381 -8.11530 -6.67771 -5.48407 -2.95036 2.95907 3.27745 3.45582 3.52132 3.54040 4.57235 4.63998 4.79107 4.84210 4.87014 5.00279 5.07945 5.19356 5.22963 5.39054 5.43549 5.47252 5.55815 5.57976 5.65116 5.72472 5.74166 5.80515 5.81270 5.95557 5.99049 6.02708 6.05482 6.18021 6.18971 6.23351 6.33238 6.50827 6.57193 6.78252 6.89788 7.00491 7.07835 7.38875 7.61230 7.79146 7.89795 8.06146 8.51010 8.61735 9.41246 10.07379 10.51507 11.48523 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.018239 B = 0.004614 C = 0.004039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1534.821012 B = 6067.216867 C = 6930.218268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.124 4.124 3 C -0.106 4.106 4 C -0.140 4.140 5 C 0.505 3.495 6 O -0.523 6.523 7 N -0.609 5.609 8 C 0.108 3.892 9 C -0.133 4.133 10 C -0.121 4.121 11 C -0.119 4.119 12 C 0.123 3.877 13 H 0.060 0.940 14 C 0.167 3.833 15 N -0.609 5.609 16 C 0.158 3.842 17 C -0.235 4.235 18 H 0.072 0.928 19 C -0.009 4.009 20 N -0.914 5.914 21 Si 0.901 3.099 22 H -0.281 1.281 23 H -0.292 1.292 24 H -0.293 1.293 25 H 0.055 0.945 26 H 0.055 0.945 27 H 0.051 0.949 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.078 0.922 35 H 0.064 0.936 36 H 0.064 0.936 37 H 0.067 0.933 38 H 0.059 0.941 39 H 0.058 0.942 40 H 0.057 0.943 41 H 0.092 0.908 42 H 0.059 0.941 43 H 0.058 0.942 44 H -0.007 1.007 45 H 0.064 0.936 46 H 0.017 0.983 47 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.263 -21.217 0.209 21.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.161 4.161 3 C -0.144 4.144 4 C -0.180 4.180 5 C 0.293 3.707 6 O -0.399 6.399 7 N -0.343 5.343 8 C -0.015 4.015 9 C -0.171 4.171 10 C -0.159 4.159 11 C -0.158 4.158 12 C 0.018 3.982 13 H 0.078 0.922 14 C 0.040 3.960 15 N -0.332 5.332 16 C 0.013 3.987 17 C -0.365 4.365 18 H 0.089 0.911 19 C -0.205 4.205 20 N -0.563 5.563 21 Si 0.732 3.268 22 H -0.206 1.206 23 H -0.219 1.219 24 H -0.220 1.220 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.070 0.930 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.088 0.912 31 H 0.089 0.911 32 H 0.105 0.895 33 H 0.105 0.895 34 H 0.097 0.903 35 H 0.082 0.918 36 H 0.083 0.917 37 H 0.086 0.914 38 H 0.078 0.922 39 H 0.077 0.923 40 H 0.076 0.924 41 H 0.110 0.890 42 H 0.077 0.923 43 H 0.076 0.924 44 H 0.012 0.988 45 H 0.082 0.918 46 H 0.035 0.965 47 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -0.680 -20.526 0.166 20.538 hybrid contribution 0.780 0.480 0.773 1.199 sum 0.100 -20.046 0.939 20.068 Atomic orbital electron populations 1.21763 0.95827 1.01278 1.02142 1.21543 0.96047 0.96880 1.01673 1.21384 0.92972 0.96199 1.03801 1.21752 0.97876 0.94873 1.03504 1.20659 0.82130 0.91338 0.76623 1.90805 1.55371 1.44900 1.48790 1.48409 1.05172 1.08117 1.72640 1.21673 0.91483 0.89765 0.98623 1.21902 0.98558 0.98105 0.98559 1.21574 0.98310 0.94570 1.01453 1.21959 0.96036 0.99483 0.98283 1.22571 0.98627 0.79647 0.97386 0.92191 1.21369 0.90512 0.82584 1.01558 1.44315 1.76048 1.09623 1.03252 1.21051 1.00001 0.94745 0.82870 1.19330 1.40033 0.89979 0.87167 0.91053 1.24839 1.02368 0.96429 0.96905 1.70125 1.53130 1.08946 1.24067 0.86211 0.78531 0.80093 0.81990 1.20585 1.21883 1.21988 0.92628 0.92629 0.93002 0.92202 0.92194 0.91151 0.91145 0.89530 0.89517 0.90317 0.91801 0.91729 0.91424 0.92241 0.92297 0.92433 0.88953 0.92271 0.92408 0.98829 0.91826 0.96461 0.94202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 9.91 37.16 0.37 -0.89 16 2 C -0.12 -1.04 5.93 -26.73 -0.16 -1.20 16 3 C -0.11 -1.16 4.50 -26.73 -0.12 -1.29 16 4 C -0.14 -1.50 4.10 -27.88 -0.11 -1.61 16 5 C 0.50 7.88 7.61 -10.98 -0.08 7.80 16 6 O -0.52 -10.42 11.39 5.56 0.06 -10.35 16 7 N -0.61 -9.20 2.97 -164.97 -0.49 -9.69 16 8 C 0.11 1.17 6.33 -3.71 -0.02 1.15 16 9 C -0.13 -1.45 6.08 -26.61 -0.16 -1.61 16 10 C -0.12 -1.64 5.88 -26.69 -0.16 -1.80 16 11 C -0.12 -2.14 4.69 -26.38 -0.12 -2.26 16 12 C 0.12 2.29 3.20 -67.37 -0.22 2.07 16 13 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 14 C 0.17 3.85 3.51 -4.04 -0.01 3.83 16 15 N -0.61 -16.13 2.68 -181.12 -0.49 -16.62 16 16 C 0.16 4.16 9.04 59.85 0.54 4.70 16 17 C -0.24 -6.65 8.24 -15.06 -0.12 -6.78 16 18 H 0.07 1.98 7.78 -52.48 -0.41 1.57 16 19 C -0.01 -0.27 5.32 -17.43 -0.09 -0.36 16 20 N -0.91 -27.57 9.96 55.49 0.55 -27.02 16 21 Si 0.90 22.59 29.57 -169.99 -5.03 17.57 16 22 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 23 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 24 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 25 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 30 H 0.07 0.87 8.10 -51.93 -0.42 0.45 16 31 H 0.07 0.88 8.10 -51.93 -0.42 0.46 16 32 H 0.09 0.77 7.48 -51.93 -0.39 0.38 16 33 H 0.09 0.77 8.11 -51.93 -0.42 0.35 16 34 H 0.08 0.65 5.96 -51.93 -0.31 0.34 16 35 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 36 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 40 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 41 H 0.09 1.94 7.00 -51.93 -0.36 1.57 16 42 H 0.06 1.44 6.27 -51.93 -0.33 1.11 16 43 H 0.06 1.44 6.98 -51.93 -0.36 1.08 16 44 H -0.01 -0.17 7.90 -51.93 -0.41 -0.58 16 45 H 0.06 1.85 6.43 -51.93 -0.33 1.52 16 46 H 0.02 0.47 7.81 -51.93 -0.41 0.06 16 47 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 LS Contribution 356.17 15.07 5.37 5.37 Total: -1.00 -31.98 356.17 -9.28 -41.25 By element: Atomic # 1 Polarization: 6.51 SS G_CDS: -8.78 Total: -2.27 kcal Atomic # 6 Polarization: 2.24 SS G_CDS: -0.48 Total: 1.76 kcal Atomic # 7 Polarization: -52.90 SS G_CDS: -0.42 Total: -53.32 kcal Atomic # 8 Polarization: -10.42 SS G_CDS: 0.06 Total: -10.35 kcal Atomic # 14 Polarization: 22.59 SS G_CDS: -5.03 Total: 17.57 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -31.98 -9.28 -41.25 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157561495.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.685 kcal (2) G-P(sol) polarization free energy of solvation -31.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds