Wall clock time and date at job start Tue Mar 31 2020 06:38:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52993 * 109.46915 * 2 1 4 4 C 1.53005 * 109.46909 * 180.02562 * 3 2 1 5 5 N 1.46507 * 109.46887 * 180.02562 * 4 3 2 6 6 C 1.37099 * 119.99819 * 267.10157 * 5 4 3 7 7 H 1.07995 * 120.00110 * 147.37897 * 6 5 4 8 8 C 1.38957 * 119.99708 * 327.37589 * 6 5 4 9 9 N 1.31402 * 120.00288 * 333.71646 * 8 6 5 10 10 Si 1.86801 * 119.99652 * 153.72087 * 8 6 5 11 11 H 1.48493 * 109.47369 * 84.99493 * 10 8 6 12 12 H 1.48496 * 109.47135 * 204.99766 * 10 8 6 13 13 H 1.48506 * 109.47011 * 324.99299 * 10 8 6 14 14 C 1.34775 * 120.00037 * 87.09844 * 5 4 3 15 15 O 1.21287 * 120.00114 * 0.02562 * 14 5 4 16 16 C 1.50698 * 119.99863 * 179.97438 * 14 5 4 17 17 H 1.09001 * 109.46727 * 40.00731 * 16 14 5 18 18 N 1.46899 * 109.46843 * 160.00096 * 16 14 5 19 19 C 1.52997 * 109.47680 * 280.00282 * 16 14 5 20 20 C 1.53000 * 109.47134 * 300.00619 * 19 16 14 21 21 C 1.52998 * 109.46824 * 179.97438 * 20 19 16 22 22 C 1.53004 * 109.47465 * 59.99969 * 21 20 19 23 23 C 1.53003 * 109.46681 * 299.99569 * 22 21 20 24 24 C 1.52993 * 109.47212 * 179.97438 * 19 16 14 25 25 H 1.08996 * 109.47304 * 60.00179 * 1 2 3 26 26 H 1.08999 * 109.46874 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46998 * 299.99818 * 1 2 3 28 28 H 1.09001 * 109.46998 * 240.00182 * 2 1 3 29 29 H 1.09000 * 109.47107 * 120.00288 * 2 1 3 30 30 H 1.09001 * 109.47139 * 60.00269 * 3 2 1 31 31 H 1.09000 * 109.47468 * 300.00067 * 3 2 1 32 32 H 1.08997 * 109.46859 * 60.00094 * 4 3 2 33 33 H 1.08996 * 109.46982 * 299.99621 * 4 3 2 34 34 H 0.97000 * 120.00498 * 180.02562 * 9 8 6 35 35 H 1.00910 * 110.99981 * 60.00873 * 18 16 14 36 36 H 1.00901 * 111.00239 * 183.95136 * 18 16 14 37 37 H 1.09004 * 109.46578 * 60.00174 * 19 16 14 38 38 H 1.09004 * 109.47025 * 299.99281 * 20 19 16 39 39 H 1.08999 * 109.47789 * 59.99495 * 20 19 16 40 40 H 1.08999 * 109.47485 * 299.99178 * 21 20 19 41 41 H 1.09001 * 109.47097 * 179.97438 * 21 20 19 42 42 H 1.08995 * 109.46851 * 179.97438 * 22 21 20 43 43 H 1.08992 * 109.47054 * 59.99742 * 22 21 20 44 44 H 1.08996 * 109.47223 * 300.00303 * 23 22 21 45 45 H 1.08999 * 109.46930 * 179.97438 * 23 22 21 46 46 H 1.09000 * 109.47644 * 299.99940 * 24 19 16 47 47 H 1.08996 * 109.47322 * 60.00373 * 24 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0583 2.8237 0.0000 6 6 4.3429 3.4507 -1.1856 7 1 4.1890 4.5151 -1.2841 8 6 4.8294 2.7166 -2.2604 9 7 5.4928 1.6023 -2.0485 10 14 4.5405 3.3139 -4.0066 11 1 5.5972 4.2890 -4.3775 12 1 4.5838 2.1586 -4.9385 13 1 3.2104 3.9690 -4.0919 14 6 4.2277 3.4781 1.1660 15 8 3.9764 2.9233 2.2148 16 6 4.7305 4.8987 1.1666 17 1 4.2671 5.4485 0.3474 18 7 4.3861 5.5394 2.4428 19 6 6.2500 4.9021 0.9880 20 6 6.9005 4.1303 2.1378 21 6 8.4199 4.1332 1.9588 22 6 8.9309 5.5755 1.9591 23 6 8.2804 6.3471 0.8092 24 6 6.7603 6.3444 0.9880 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6766 1.9563 -0.8900 32 1 3.9329 0.9288 -0.8909 33 1 3.9337 0.9286 0.8891 34 1 5.8327 1.0900 -2.7988 35 1 4.8042 5.0480 3.2187 36 1 4.6554 6.5118 2.4436 37 1 6.5055 4.4267 0.0409 38 1 6.6450 4.6058 3.0849 39 1 6.5369 3.1028 2.1374 40 1 8.6752 3.6576 1.0119 41 1 8.8834 3.5838 2.7782 42 1 10.0134 5.5774 1.8320 43 1 8.6757 6.0510 2.9061 44 1 8.5355 5.8715 -0.1377 45 1 8.6440 7.3747 0.8097 46 1 6.2970 6.8939 0.1685 47 1 6.5048 6.8203 1.9347 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001160730967.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:33 Heat of formation + Delta-G solvation = -70.920592 kcal Electronic energy + Delta-G solvation = -24215.240746 eV Core-core repulsion = 21010.331283 eV Total energy + Delta-G solvation = -3204.909463 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.45107 -37.68952 -35.38234 -33.92062 -33.68084 -31.47472 -30.41641 -29.35203 -28.55062 -25.39314 -24.81639 -22.63773 -22.31648 -21.05102 -20.27714 -19.23634 -18.71003 -16.74527 -16.21250 -15.38433 -14.81833 -14.69416 -14.45121 -14.12944 -14.05562 -13.87729 -13.60155 -13.48373 -12.99610 -12.77675 -12.32893 -12.17842 -11.97345 -11.86746 -11.68950 -11.40846 -11.21687 -11.12770 -10.85635 -10.75142 -10.68466 -10.54790 -10.46131 -10.32966 -10.18720 -10.07525 -9.85247 -9.69626 -9.64004 -9.03526 -8.39620 -7.89924 -7.48539 -6.38981 -3.98813 3.09550 3.20895 3.25315 3.96115 4.11256 4.67925 4.92371 5.01324 5.07749 5.13680 5.38261 5.52180 5.53763 5.56941 5.64357 5.70024 5.77597 5.82620 5.85311 5.87595 5.93994 6.11512 6.22371 6.26130 6.27536 6.28900 6.33085 6.41566 6.44012 6.48068 6.53675 6.57245 6.64201 6.66896 6.77542 6.86661 6.88962 6.99737 7.16370 7.38774 7.48894 7.73783 7.94024 8.05644 8.39927 9.10977 9.59925 10.02684 10.62176 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.014545 B = 0.006497 C = 0.005170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1924.600397 B = 4308.494960 C = 5414.974362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.119 4.119 3 C -0.127 4.127 4 C 0.116 3.884 5 N -0.438 5.438 6 C -0.339 4.339 7 H 0.088 0.912 8 C 0.047 3.953 9 N -0.851 5.851 10 Si 0.901 3.099 11 H -0.277 1.277 12 H -0.283 1.283 13 H -0.269 1.269 14 C 0.482 3.518 15 O -0.599 6.599 16 C 0.096 3.904 17 H 0.091 0.909 18 N -0.832 5.832 19 C -0.109 4.109 20 C -0.109 4.109 21 C -0.117 4.117 22 C -0.116 4.116 23 C -0.117 4.117 24 C -0.112 4.112 25 H 0.050 0.950 26 H 0.046 0.954 27 H 0.050 0.950 28 H 0.058 0.942 29 H 0.056 0.944 30 H 0.053 0.947 31 H 0.057 0.943 32 H 0.103 0.897 33 H 0.050 0.950 34 H 0.268 0.732 35 H 0.343 0.657 36 H 0.331 0.669 37 H 0.096 0.904 38 H 0.051 0.949 39 H 0.069 0.931 40 H 0.063 0.937 41 H 0.054 0.946 42 H 0.054 0.946 43 H 0.056 0.944 44 H 0.063 0.937 45 H 0.054 0.946 46 H 0.061 0.939 47 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.249 4.589 2.409 5.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.157 4.157 3 C -0.166 4.166 4 C -0.008 4.008 5 N -0.156 5.156 6 C -0.467 4.467 7 H 0.106 0.894 8 C -0.159 4.159 9 N -0.487 5.487 10 Si 0.728 3.272 11 H -0.202 1.202 12 H -0.208 1.208 13 H -0.194 1.194 14 C 0.270 3.730 15 O -0.484 6.484 16 C -0.019 4.019 17 H 0.109 0.891 18 N -0.363 5.363 19 C -0.130 4.130 20 C -0.147 4.147 21 C -0.155 4.155 22 C -0.154 4.154 23 C -0.154 4.154 24 C -0.150 4.150 25 H 0.069 0.931 26 H 0.065 0.935 27 H 0.069 0.931 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.072 0.928 31 H 0.076 0.924 32 H 0.121 0.879 33 H 0.068 0.932 34 H 0.079 0.921 35 H 0.158 0.842 36 H 0.144 0.856 37 H 0.114 0.886 38 H 0.069 0.931 39 H 0.087 0.913 40 H 0.082 0.918 41 H 0.073 0.927 42 H 0.073 0.927 43 H 0.074 0.926 44 H 0.082 0.918 45 H 0.073 0.927 46 H 0.080 0.920 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 1.454 3.956 2.614 4.959 hybrid contribution 0.951 0.423 -1.039 1.470 sum 2.405 4.378 1.575 5.238 Atomic orbital electron populations 1.21756 0.96671 1.00611 1.01498 1.21429 0.94966 0.97840 1.01482 1.21895 0.97964 0.95350 1.01387 1.21376 0.91168 0.85052 1.03226 1.43428 1.55600 1.11980 1.04587 1.19304 1.44211 0.94545 0.88618 0.89410 1.25189 0.94328 0.96437 0.99947 1.69996 1.30033 1.16495 1.32195 0.86368 0.79312 0.78562 0.82991 1.20248 1.20806 1.19418 1.20092 0.80890 0.88176 0.83800 1.90497 1.56522 1.69484 1.31886 1.21143 0.93445 0.94908 0.92390 0.89081 1.58685 1.67699 1.05504 1.04437 1.21702 0.95007 0.95204 1.01062 1.21496 0.94405 1.01253 0.97516 1.21511 0.96269 0.96016 1.01679 1.21518 0.99105 0.96245 0.98501 1.21506 0.95611 0.99347 0.98953 1.21587 0.95430 0.96996 1.00992 0.93058 0.93477 0.93062 0.92352 0.92474 0.92843 0.92390 0.87912 0.93155 0.92142 0.84180 0.85632 0.88586 0.93084 0.91259 0.91817 0.92713 0.92703 0.92569 0.91817 0.92688 0.92044 0.92810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.17 9.91 37.16 0.37 -1.80 16 2 C -0.12 -2.06 5.93 -26.73 -0.16 -2.22 16 3 C -0.13 -2.65 5.53 -26.73 -0.15 -2.80 16 4 C 0.12 2.75 4.96 -4.04 -0.02 2.73 16 5 N -0.44 -10.77 2.56 -114.81 -0.29 -11.07 16 6 C -0.34 -8.30 7.83 -14.93 -0.12 -8.41 16 7 H 0.09 2.08 6.45 -52.49 -0.34 1.75 16 8 C 0.05 1.15 4.85 -17.47 -0.08 1.07 16 9 N -0.85 -21.69 11.48 55.50 0.64 -21.05 16 10 Si 0.90 19.00 29.63 -169.99 -5.04 13.97 16 11 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 12 H -0.28 -6.00 7.11 56.52 0.40 -5.59 16 13 H -0.27 -5.68 7.11 56.52 0.40 -5.27 16 14 C 0.48 11.57 5.73 -10.99 -0.06 11.50 16 15 O -0.60 -15.72 15.58 5.55 0.09 -15.63 16 16 C 0.10 1.90 2.33 -68.87 -0.16 1.74 16 17 H 0.09 1.85 6.58 -51.93 -0.34 1.51 16 18 N -0.83 -14.76 8.81 -5.66 -0.05 -14.81 16 19 C -0.11 -1.94 1.98 -90.62 -0.18 -2.12 16 20 C -0.11 -1.91 4.61 -26.73 -0.12 -2.03 16 21 C -0.12 -1.77 5.92 -26.73 -0.16 -1.93 16 22 C -0.12 -1.49 5.92 -26.73 -0.16 -1.65 16 23 C -0.12 -1.54 5.92 -26.70 -0.16 -1.69 16 24 C -0.11 -1.61 4.87 -26.71 -0.13 -1.74 16 25 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 27 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 29 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 31 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 32 H 0.10 2.57 5.39 -51.93 -0.28 2.30 16 33 H 0.05 1.26 7.51 -51.93 -0.39 0.87 16 34 H 0.27 6.51 8.31 -40.82 -0.34 6.17 16 35 H 0.34 6.21 6.75 -39.29 -0.27 5.94 16 36 H 0.33 4.85 7.40 -39.29 -0.29 4.56 16 37 H 0.10 2.02 7.28 -51.93 -0.38 1.64 16 38 H 0.05 0.84 6.67 -51.93 -0.35 0.49 16 39 H 0.07 1.47 7.00 -51.93 -0.36 1.10 16 40 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 41 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 43 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 45 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 46 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 47 H 0.05 0.70 6.76 -51.93 -0.35 0.35 16 LS Contribution 355.77 15.07 5.36 5.36 Total: -1.00 -27.15 355.77 -8.98 -36.13 By element: Atomic # 1 Polarization: 24.86 SS G_CDS: -8.40 Total: 16.46 kcal Atomic # 6 Polarization: -8.07 SS G_CDS: -1.29 Total: -9.36 kcal Atomic # 7 Polarization: -47.22 SS G_CDS: 0.29 Total: -46.93 kcal Atomic # 8 Polarization: -15.72 SS G_CDS: 0.09 Total: -15.63 kcal Atomic # 14 Polarization: 19.00 SS G_CDS: -5.04 Total: 13.97 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -27.15 -8.98 -36.13 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160730967.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.787 kcal (2) G-P(sol) polarization free energy of solvation -27.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds