Wall clock time and date at job start Tue Mar 31 2020 05:58:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.46934 * 2 1 4 4 C 1.53001 * 109.46953 * 179.97438 * 3 2 1 5 5 H 1.09000 * 110.43403 * 52.46271 * 4 3 2 6 6 C 1.54261 * 110.60478 * 289.84252 * 4 3 2 7 7 C 1.53874 * 106.60458 * 217.65567 * 6 4 3 8 8 C 1.54270 * 106.59463 * 359.97438 * 7 6 4 9 9 C 1.54888 * 110.48655 * 174.99803 * 4 3 2 10 10 H 1.08998 * 110.75683 * 38.26226 * 9 4 3 11 11 C 1.50702 * 110.76168 * 275.07239 * 9 4 3 12 12 O 1.21282 * 119.99683 * 359.97438 * 11 9 4 13 13 N 1.34767 * 120.00042 * 180.02562 * 11 9 4 14 14 C 1.46500 * 119.99818 * 179.97438 * 13 11 9 15 15 C 1.53006 * 109.47373 * 179.97438 * 14 13 11 16 16 C 1.52999 * 109.46997 * 180.02562 * 15 14 13 17 17 N 1.46506 * 109.46684 * 180.02562 * 16 15 14 18 18 C 1.36938 * 119.99589 * 180.02562 * 17 16 15 19 19 H 1.07999 * 120.00325 * 359.97438 * 18 17 16 20 20 C 1.38815 * 119.99817 * 180.02562 * 18 17 16 21 21 N 1.31611 * 120.00107 * 179.97438 * 20 18 17 22 22 Si 1.86805 * 119.99746 * 359.71693 * 20 18 17 23 23 H 1.48500 * 109.46781 * 90.00854 * 22 20 18 24 24 H 1.48496 * 109.47225 * 210.00413 * 22 20 18 25 25 H 1.48494 * 109.47296 * 330.00424 * 22 20 18 26 26 H 1.09000 * 109.47112 * 59.99836 * 1 2 3 27 27 H 1.08998 * 109.47112 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47150 * 299.99668 * 1 2 3 29 29 H 1.08994 * 109.47341 * 240.00079 * 2 1 3 30 30 H 1.09000 * 109.47112 * 120.00164 * 2 1 3 31 31 H 1.09005 * 109.47438 * 60.00184 * 3 2 1 32 32 H 1.08996 * 109.47426 * 299.99520 * 3 2 1 33 33 H 1.09006 * 110.03296 * 336.94460 * 6 4 3 34 34 H 1.09000 * 110.03399 * 98.31709 * 6 4 3 35 35 H 1.08999 * 110.03154 * 119.27952 * 7 6 4 36 36 H 1.08997 * 110.03063 * 240.66563 * 7 6 4 37 37 H 1.08999 * 110.48272 * 264.93147 * 8 7 6 38 38 H 1.08995 * 110.48683 * 142.28542 * 8 7 6 39 39 H 0.97003 * 120.00651 * 359.97438 * 13 11 9 40 40 H 1.09000 * 109.47175 * 59.99847 * 14 13 11 41 41 H 1.08996 * 109.47197 * 300.00089 * 14 13 11 42 42 H 1.09000 * 109.46866 * 59.99938 * 15 14 13 43 43 H 1.09001 * 109.46611 * 300.00055 * 15 14 13 44 44 H 1.09000 * 109.47486 * 60.00167 * 16 15 14 45 45 H 1.09001 * 109.47362 * 299.99445 * 16 15 14 46 46 H 0.96999 * 120.00080 * 359.97438 * 17 16 15 47 47 H 0.97000 * 120.00330 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9509 0.8201 -0.8090 6 6 4.1123 0.9526 1.3591 7 6 5.3596 1.7997 1.6660 8 6 5.5322 2.7746 0.4829 9 6 4.1121 2.8879 -0.1258 10 1 3.4974 3.5825 0.4466 11 6 4.1830 3.3072 -1.5716 12 8 3.8375 2.5384 -2.4436 13 7 4.6312 4.5362 -1.8956 14 6 4.7006 4.9436 -3.3011 15 6 5.2387 6.3731 -3.3918 16 6 5.3106 6.7987 -4.8597 17 7 5.8264 8.1672 -4.9465 18 6 5.9785 8.7652 -6.1690 19 1 5.7185 8.2279 -7.0691 20 6 6.4677 10.0616 -6.2514 21 7 6.6143 10.6363 -7.4263 22 14 6.9113 10.9932 -4.6941 23 1 8.3353 10.7424 -4.3560 24 1 6.7027 12.4474 -4.9108 25 1 6.0484 10.5304 -3.5777 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5139 0.8900 31 1 1.6766 1.9564 0.8900 32 1 1.6767 1.9563 -0.8900 33 1 3.3613 1.0987 2.1356 34 1 4.3824 -0.1015 1.2952 35 1 5.2140 2.3571 2.5913 36 1 6.2357 1.1569 1.7516 37 1 6.2300 2.3669 -0.2485 38 1 5.8738 3.7472 0.8367 39 1 4.9079 5.1511 -1.1982 40 1 3.7042 4.9023 -3.7410 41 1 5.3649 4.2699 -3.8423 42 1 6.2351 6.4148 -2.9518 43 1 4.5741 7.0465 -2.8507 44 1 4.3140 6.7571 -5.2993 45 1 5.9751 6.1253 -5.4012 46 1 6.0596 8.6498 -4.1381 47 1 6.9559 11.5423 -7.4839 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001161419364.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:51 Heat of formation + Delta-G solvation = -67.630373 kcal Electronic energy + Delta-G solvation = -21944.892421 eV Core-core repulsion = 18740.125633 eV Total energy + Delta-G solvation = -3204.766788 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.38799 -38.05464 -36.10709 -34.82001 -34.40828 -32.06144 -30.46426 -30.03922 -29.13430 -25.71411 -25.16932 -22.60982 -21.85600 -21.63370 -21.25609 -20.07968 -19.75101 -17.73841 -17.24402 -16.08513 -15.84462 -15.59066 -15.23896 -14.84090 -14.51217 -14.29620 -14.07201 -13.68368 -13.51462 -13.14661 -12.88597 -12.80004 -12.59720 -12.56423 -12.02572 -12.00421 -11.65416 -11.51051 -11.19875 -11.18092 -11.05262 -11.01514 -10.85688 -10.72122 -10.69727 -10.65512 -10.61756 -10.17912 -9.76781 -9.60130 -9.08718 -8.91490 -7.25692 -5.77885 -3.14041 2.57833 3.11883 3.35323 3.37531 3.43470 4.10016 4.23457 4.36089 4.57423 4.72505 4.77313 4.85488 4.93202 5.00475 5.04121 5.12755 5.15752 5.20357 5.24800 5.31639 5.39075 5.49255 5.50716 5.52734 5.59386 5.61596 5.63275 5.76712 5.77144 5.82378 5.86335 5.92205 5.92472 5.96267 6.02520 6.12267 6.14824 6.21316 6.41692 6.67718 6.70901 7.44178 7.98242 8.17237 8.40892 9.19581 9.91656 10.11212 11.40483 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.028069 B = 0.002554 C = 0.002421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.292562 B =10960.311184 C =11561.000356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.122 4.122 3 C -0.111 4.111 4 C -0.072 4.072 5 H 0.088 0.912 6 C -0.121 4.121 7 C -0.123 4.123 8 C -0.113 4.113 9 C -0.113 4.113 10 H 0.100 0.900 11 C 0.518 3.482 12 O -0.539 6.539 13 N -0.729 5.729 14 C 0.122 3.878 15 C -0.141 4.141 16 C 0.160 3.840 17 N -0.757 5.757 18 C -0.245 4.245 19 H 0.091 0.909 20 C 0.003 3.997 21 N -0.934 5.934 22 Si 0.887 3.113 23 H -0.284 1.284 24 H -0.291 1.291 25 H -0.278 1.278 26 H 0.054 0.946 27 H 0.051 0.949 28 H 0.051 0.949 29 H 0.062 0.938 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.066 0.934 33 H 0.065 0.935 34 H 0.064 0.936 35 H 0.065 0.935 36 H 0.065 0.935 37 H 0.071 0.929 38 H 0.072 0.928 39 H 0.399 0.601 40 H 0.069 0.931 41 H 0.069 0.931 42 H 0.068 0.932 43 H 0.067 0.933 44 H 0.030 0.970 45 H 0.030 0.970 46 H 0.360 0.640 47 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.925 -20.603 22.757 31.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.160 4.160 3 C -0.148 4.148 4 C -0.091 4.091 5 H 0.106 0.894 6 C -0.158 4.158 7 C -0.161 4.161 8 C -0.151 4.151 9 C -0.135 4.135 10 H 0.119 0.881 11 C 0.304 3.696 12 O -0.415 6.415 13 N -0.380 5.380 14 C -0.002 4.002 15 C -0.180 4.180 16 C 0.033 3.967 17 N -0.403 5.403 18 C -0.375 4.375 19 H 0.109 0.891 20 C -0.193 4.193 21 N -0.582 5.582 22 Si 0.717 3.283 23 H -0.211 1.211 24 H -0.217 1.217 25 H -0.204 1.204 26 H 0.073 0.927 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.081 0.919 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.085 0.915 33 H 0.084 0.916 34 H 0.083 0.917 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.090 0.910 38 H 0.091 0.909 39 H 0.233 0.767 40 H 0.087 0.913 41 H 0.087 0.913 42 H 0.086 0.914 43 H 0.086 0.914 44 H 0.048 0.952 45 H 0.048 0.952 46 H 0.193 0.807 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -7.184 -21.122 21.848 31.226 hybrid contribution 0.514 1.243 1.316 1.882 sum -6.669 -19.879 23.164 31.245 Atomic orbital electron populations 1.21780 0.96086 1.01414 1.01765 1.21506 0.95628 0.96929 1.01939 1.21632 0.94219 0.97000 1.01960 1.21865 0.95386 0.93984 0.97838 0.89392 1.22243 0.97086 0.99625 0.96867 1.22113 0.98302 0.97702 0.97964 1.22330 0.94945 1.00167 0.97694 1.22398 0.98862 0.99215 0.92986 0.88150 1.20510 0.76664 0.81420 0.91050 1.90699 1.48086 1.52084 1.50679 1.46107 1.66708 1.15832 1.09369 1.21328 1.01843 0.95686 0.81329 1.21991 1.01450 0.94608 0.99903 1.20500 0.97430 0.86940 0.91874 1.42689 1.79683 1.12284 1.05609 1.19075 1.36418 0.96879 0.85159 0.89145 1.24697 1.01358 0.96965 0.96280 1.69700 1.51928 1.14554 1.21983 0.86511 0.78377 0.79643 0.83758 1.21071 1.21692 1.20395 0.92687 0.92943 0.92949 0.91917 0.92186 0.92265 0.91545 0.91580 0.91670 0.91608 0.91600 0.91019 0.90933 0.76696 0.91283 0.91273 0.91378 0.91402 0.95237 0.95181 0.80706 0.93027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 9.91 37.16 0.37 -0.72 16 2 C -0.12 -0.94 5.81 -26.73 -0.16 -1.09 16 3 C -0.11 -0.93 4.61 -26.73 -0.12 -1.05 16 4 C -0.07 -0.61 1.93 -88.96 -0.17 -0.78 16 5 H 0.09 0.94 7.44 -51.93 -0.39 0.56 16 6 C -0.12 -0.79 5.70 -25.62 -0.15 -0.94 16 7 C -0.12 -0.75 6.80 -25.61 -0.17 -0.93 16 8 C -0.11 -0.80 6.26 -25.05 -0.16 -0.96 16 9 C -0.11 -0.96 2.72 -89.76 -0.24 -1.20 16 10 H 0.10 0.71 8.06 -51.93 -0.42 0.30 16 11 C 0.52 6.12 7.13 -10.99 -0.08 6.04 16 12 O -0.54 -8.47 15.72 5.56 0.09 -8.38 16 13 N -0.73 -7.89 5.56 -60.29 -0.33 -8.22 16 14 C 0.12 1.58 5.67 -4.04 -0.02 1.56 16 15 C -0.14 -2.00 5.44 -26.73 -0.15 -2.14 16 16 C 0.16 3.06 6.26 -4.04 -0.03 3.03 16 17 N -0.76 -18.08 5.41 -59.90 -0.32 -18.40 16 18 C -0.25 -7.05 10.47 -15.06 -0.16 -7.21 16 19 H 0.09 2.78 8.06 -52.49 -0.42 2.36 16 20 C 0.00 0.08 5.50 -17.43 -0.10 -0.01 16 21 N -0.93 -29.56 13.97 55.49 0.78 -28.78 16 22 Si 0.89 22.05 27.73 -169.99 -4.71 17.33 16 23 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 24 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 25 H -0.28 -6.44 6.53 56.52 0.37 -6.07 16 26 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 28 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.06 0.40 7.63 -51.93 -0.40 0.01 16 31 H 0.06 0.44 7.96 -51.93 -0.41 0.02 16 32 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.07 0.39 7.72 -51.93 -0.40 -0.01 16 34 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.07 0.59 8.04 -51.93 -0.42 0.17 16 38 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.40 3.31 8.47 -40.82 -0.35 2.97 16 40 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 41 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 42 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 43 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 44 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 45 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 46 H 0.36 8.27 5.54 -40.82 -0.23 8.04 16 47 H 0.26 7.79 8.31 -40.82 -0.34 7.45 16 LS Contribution 372.69 15.07 5.62 5.62 Total: -1.00 -33.33 372.69 -9.16 -42.49 By element: Atomic # 1 Polarization: 13.71 SS G_CDS: -8.94 Total: 4.78 kcal Atomic # 6 Polarization: -5.09 SS G_CDS: -1.33 Total: -6.42 kcal Atomic # 7 Polarization: -55.53 SS G_CDS: 0.12 Total: -55.41 kcal Atomic # 8 Polarization: -8.47 SS G_CDS: 0.09 Total: -8.38 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -4.71 Total: 17.33 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -33.33 -9.16 -42.49 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161419364.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.142 kcal (2) G-P(sol) polarization free energy of solvation -33.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds