Wall clock time and date at job start Tue Mar 31 2020 05:58:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.46934 * 2 1 4 4 C 1.53001 * 109.46953 * 179.97438 * 3 2 1 5 5 H 1.09000 * 110.43403 * 52.46271 * 4 3 2 6 6 C 1.54261 * 110.60478 * 289.84252 * 4 3 2 7 7 C 1.53874 * 106.60458 * 217.65567 * 6 4 3 8 8 C 1.54270 * 106.59463 * 359.97438 * 7 6 4 9 9 C 1.54888 * 110.48655 * 174.99803 * 4 3 2 10 10 H 1.08998 * 110.75683 * 38.26226 * 9 4 3 11 11 C 1.50702 * 110.76168 * 275.07239 * 9 4 3 12 12 O 1.21282 * 119.99683 * 359.97438 * 11 9 4 13 13 N 1.34767 * 120.00042 * 180.02562 * 11 9 4 14 14 C 1.46500 * 119.99818 * 179.97438 * 13 11 9 15 15 C 1.53006 * 109.47373 * 179.97438 * 14 13 11 16 16 C 1.52999 * 109.46997 * 180.02562 * 15 14 13 17 17 N 1.46506 * 109.46684 * 180.02562 * 16 15 14 18 18 C 1.36938 * 119.99589 * 180.02562 * 17 16 15 19 19 H 1.07999 * 120.00325 * 359.97438 * 18 17 16 20 20 C 1.38815 * 119.99817 * 180.02562 * 18 17 16 21 21 N 1.31611 * 120.00107 * 179.97438 * 20 18 17 22 22 Si 1.86805 * 119.99746 * 359.71693 * 20 18 17 23 23 H 1.48500 * 109.46781 * 90.00854 * 22 20 18 24 24 H 1.48496 * 109.47225 * 210.00413 * 22 20 18 25 25 H 1.48494 * 109.47296 * 330.00424 * 22 20 18 26 26 H 1.09000 * 109.47112 * 59.99836 * 1 2 3 27 27 H 1.08998 * 109.47112 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47150 * 299.99668 * 1 2 3 29 29 H 1.08994 * 109.47341 * 240.00079 * 2 1 3 30 30 H 1.09000 * 109.47112 * 120.00164 * 2 1 3 31 31 H 1.09005 * 109.47438 * 60.00184 * 3 2 1 32 32 H 1.08996 * 109.47426 * 299.99520 * 3 2 1 33 33 H 1.09006 * 110.03296 * 336.94460 * 6 4 3 34 34 H 1.09000 * 110.03399 * 98.31709 * 6 4 3 35 35 H 1.08999 * 110.03154 * 119.27952 * 7 6 4 36 36 H 1.08997 * 110.03063 * 240.66563 * 7 6 4 37 37 H 1.08999 * 110.48272 * 264.93147 * 8 7 6 38 38 H 1.08995 * 110.48683 * 142.28542 * 8 7 6 39 39 H 0.97003 * 120.00651 * 359.97438 * 13 11 9 40 40 H 1.09000 * 109.47175 * 59.99847 * 14 13 11 41 41 H 1.08996 * 109.47197 * 300.00089 * 14 13 11 42 42 H 1.09000 * 109.46866 * 59.99938 * 15 14 13 43 43 H 1.09001 * 109.46611 * 300.00055 * 15 14 13 44 44 H 1.09000 * 109.47486 * 60.00167 * 16 15 14 45 45 H 1.09001 * 109.47362 * 299.99445 * 16 15 14 46 46 H 0.96999 * 120.00080 * 359.97438 * 17 16 15 47 47 H 0.97000 * 120.00330 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9509 0.8201 -0.8090 6 6 4.1123 0.9526 1.3591 7 6 5.3596 1.7997 1.6660 8 6 5.5322 2.7746 0.4829 9 6 4.1121 2.8879 -0.1258 10 1 3.4974 3.5825 0.4466 11 6 4.1830 3.3072 -1.5716 12 8 3.8375 2.5384 -2.4436 13 7 4.6312 4.5362 -1.8956 14 6 4.7006 4.9436 -3.3011 15 6 5.2387 6.3731 -3.3918 16 6 5.3106 6.7987 -4.8597 17 7 5.8264 8.1672 -4.9465 18 6 5.9785 8.7652 -6.1690 19 1 5.7185 8.2279 -7.0691 20 6 6.4677 10.0616 -6.2514 21 7 6.6143 10.6363 -7.4263 22 14 6.9113 10.9932 -4.6941 23 1 8.3353 10.7424 -4.3560 24 1 6.7027 12.4474 -4.9108 25 1 6.0484 10.5304 -3.5777 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5139 0.8900 31 1 1.6766 1.9564 0.8900 32 1 1.6767 1.9563 -0.8900 33 1 3.3613 1.0987 2.1356 34 1 4.3824 -0.1015 1.2952 35 1 5.2140 2.3571 2.5913 36 1 6.2357 1.1569 1.7516 37 1 6.2300 2.3669 -0.2485 38 1 5.8738 3.7472 0.8367 39 1 4.9079 5.1511 -1.1982 40 1 3.7042 4.9023 -3.7410 41 1 5.3649 4.2699 -3.8423 42 1 6.2351 6.4148 -2.9518 43 1 4.5741 7.0465 -2.8507 44 1 4.3140 6.7571 -5.2993 45 1 5.9751 6.1253 -5.4012 46 1 6.0596 8.6498 -4.1381 47 1 6.9559 11.5423 -7.4839 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001161419364.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:50 Heat of formation + Delta-G solvation = -89.213076 kcal Electronic energy + Delta-G solvation = -21945.828317 eV Core-core repulsion = 18740.125633 eV Total energy + Delta-G solvation = -3205.702684 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.23826 -38.83298 -37.56001 -35.96100 -35.35787 -33.88237 -31.95055 -30.63893 -30.02769 -27.03506 -26.01158 -24.20104 -22.74867 -22.59349 -22.40619 -20.82408 -20.48982 -19.64455 -18.24799 -17.16260 -16.83542 -16.54979 -16.32339 -15.96527 -15.69564 -15.46808 -15.14928 -14.82521 -14.69052 -14.35510 -13.89767 -13.78758 -13.76672 -13.42240 -13.25188 -12.89667 -12.70353 -12.55696 -12.54727 -12.20614 -12.10207 -12.02494 -12.01233 -11.81840 -11.77035 -11.62084 -11.28890 -11.26139 -11.22388 -10.99248 -10.74551 -10.09514 -9.33578 -8.04288 -5.39650 1.37752 1.43332 1.50719 1.65672 2.19688 2.48374 3.26623 3.46518 3.54529 3.63949 3.72373 4.05840 4.07768 4.18643 4.20804 4.22772 4.29225 4.41015 4.49377 4.54365 4.57741 4.65109 4.69458 4.69929 4.76846 4.79003 4.87785 4.96367 4.98927 5.04629 5.11458 5.22289 5.23535 5.26139 5.26753 5.29284 5.35951 5.43867 5.47785 5.51198 5.59070 5.73150 6.19127 6.58362 7.05832 7.28165 7.80057 8.01461 9.17186 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.028069 B = 0.002554 C = 0.002421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.292562 B =10960.311184 C =11561.000356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.122 4.122 3 C -0.107 4.107 4 C -0.074 4.074 5 H 0.058 0.942 6 C -0.116 4.116 7 C -0.120 4.120 8 C -0.111 4.111 9 C -0.108 4.108 10 H 0.123 0.877 11 C 0.514 3.486 12 O -0.585 6.585 13 N -0.717 5.717 14 C 0.131 3.869 15 C -0.121 4.121 16 C 0.154 3.846 17 N -0.758 5.758 18 C -0.243 4.243 19 H 0.052 0.948 20 C -0.069 4.069 21 N -0.985 5.985 22 Si 0.964 3.036 23 H -0.275 1.275 24 H -0.296 1.296 25 H -0.246 1.246 26 H 0.043 0.957 27 H 0.059 0.941 28 H 0.062 0.938 29 H 0.046 0.954 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.039 0.961 33 H 0.079 0.921 34 H 0.065 0.935 35 H 0.082 0.918 36 H 0.068 0.932 37 H 0.055 0.945 38 H 0.092 0.908 39 H 0.416 0.584 40 H 0.057 0.943 41 H 0.058 0.942 42 H 0.083 0.917 43 H 0.082 0.918 44 H 0.023 0.977 45 H 0.024 0.976 46 H 0.369 0.631 47 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.767 -20.479 26.999 34.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.159 4.159 3 C -0.144 4.144 4 C -0.093 4.093 5 H 0.076 0.924 6 C -0.153 4.153 7 C -0.158 4.158 8 C -0.149 4.149 9 C -0.129 4.129 10 H 0.141 0.859 11 C 0.302 3.698 12 O -0.465 6.465 13 N -0.369 5.369 14 C 0.006 3.994 15 C -0.159 4.159 16 C 0.027 3.973 17 N -0.404 5.404 18 C -0.374 4.374 19 H 0.070 0.930 20 C -0.260 4.260 21 N -0.635 5.635 22 Si 0.790 3.210 23 H -0.201 1.201 24 H -0.222 1.222 25 H -0.170 1.170 26 H 0.062 0.938 27 H 0.078 0.922 28 H 0.081 0.919 29 H 0.064 0.936 30 H 0.092 0.908 31 H 0.095 0.905 32 H 0.058 0.942 33 H 0.098 0.902 34 H 0.084 0.916 35 H 0.101 0.899 36 H 0.087 0.913 37 H 0.074 0.926 38 H 0.111 0.889 39 H 0.252 0.748 40 H 0.076 0.924 41 H 0.076 0.924 42 H 0.102 0.898 43 H 0.100 0.900 44 H 0.041 0.959 45 H 0.042 0.958 46 H 0.203 0.797 47 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -7.031 -21.026 26.146 34.280 hybrid contribution 0.427 1.107 -0.128 1.194 sum -6.604 -19.918 26.018 33.426 Atomic orbital electron populations 1.21779 0.95608 1.01893 1.01708 1.21497 0.96055 0.96543 1.01815 1.21596 0.94201 0.97256 1.01389 1.21831 0.95417 0.93821 0.98187 0.92391 1.22215 0.97673 0.99756 0.95674 1.22118 0.98052 0.97517 0.98071 1.22351 0.93423 1.01495 0.97616 1.22451 1.00375 0.99397 0.90634 0.85922 1.21176 0.75491 0.80961 0.92216 1.90685 1.50084 1.53395 1.52310 1.45954 1.66226 1.15981 1.08789 1.21056 1.00860 0.94866 0.82641 1.21753 1.02802 0.95090 0.96254 1.20657 0.96458 0.84633 0.95546 1.42647 1.79798 1.13872 1.04102 1.19042 1.35443 0.96951 0.85958 0.93008 1.25655 1.01847 0.98165 1.00330 1.69903 1.53567 1.15006 1.25033 0.85281 0.78778 0.77247 0.79681 1.20124 1.22246 1.16971 0.93803 0.92239 0.91916 0.93559 0.90765 0.90544 0.94202 0.90224 0.91632 0.89920 0.91309 0.92627 0.88932 0.74763 0.92429 0.92404 0.89835 0.89981 0.95904 0.95804 0.79719 0.93223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.05 9.91 71.98 0.71 -1.34 16 2 C -0.12 -1.80 5.81 30.59 0.18 -1.62 16 3 C -0.11 -1.71 4.61 30.59 0.14 -1.57 16 4 C -0.07 -1.19 1.93 -9.72 -0.02 -1.21 16 5 H 0.06 1.29 7.44 -2.39 -0.02 1.27 16 6 C -0.12 -1.24 5.70 31.32 0.18 -1.07 16 7 C -0.12 -1.10 6.80 31.32 0.21 -0.89 16 8 C -0.11 -1.28 6.26 31.68 0.20 -1.08 16 9 C -0.11 -1.61 2.72 -10.24 -0.03 -1.63 16 10 H 0.12 1.33 8.06 -2.39 -0.02 1.31 16 11 C 0.51 11.73 7.13 87.66 0.62 12.35 16 12 O -0.58 -18.88 15.72 -3.04 -0.05 -18.92 16 13 N -0.72 -14.17 5.56 -463.06 -2.57 -16.74 16 14 C 0.13 3.24 5.67 86.38 0.49 3.73 16 15 C -0.12 -3.13 5.44 30.60 0.17 -2.96 16 16 C 0.15 5.75 6.26 86.38 0.54 6.29 16 17 N -0.76 -35.28 5.41 -343.44 -1.86 -37.14 16 18 C -0.24 -14.14 10.47 84.03 0.88 -13.26 16 19 H 0.05 3.33 8.06 -2.91 -0.02 3.31 16 20 C -0.07 -4.08 5.50 84.86 0.47 -3.62 16 21 N -0.98 -63.81 13.97 21.65 0.30 -63.50 16 22 Si 0.96 44.73 27.73 68.60 1.90 46.64 16 23 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 24 H -0.30 -13.92 7.11 99.48 0.71 -13.22 16 25 H -0.25 -9.99 6.53 99.48 0.65 -9.34 16 26 H 0.04 0.67 8.14 -2.39 -0.02 0.65 16 27 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 28 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 29 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.07 0.88 7.63 -2.39 -0.02 0.86 16 31 H 0.08 0.95 7.96 -2.38 -0.02 0.93 16 32 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.08 0.67 7.72 -2.38 -0.02 0.65 16 34 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 35 H 0.08 0.52 8.14 -2.39 -0.02 0.50 16 36 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 37 H 0.05 0.83 8.04 -2.39 -0.02 0.81 16 38 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 39 H 0.42 5.50 8.47 -92.71 -0.79 4.72 16 40 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 41 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 42 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 43 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 44 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 45 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 46 H 0.37 15.81 5.54 -92.71 -0.51 15.29 16 47 H 0.26 15.88 8.31 -92.71 -0.77 15.11 16 Total: -1.00 -74.58 372.69 2.04 -72.54 By element: Atomic # 1 Polarization: 25.41 SS G_CDS: -0.43 Total: 24.98 kcal Atomic # 6 Polarization: -12.59 SS G_CDS: 4.74 Total: -7.85 kcal Atomic # 7 Polarization: -113.26 SS G_CDS: -4.13 Total: -117.38 kcal Atomic # 8 Polarization: -18.88 SS G_CDS: -0.05 Total: -18.92 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 1.90 Total: 46.64 kcal Total: -74.58 2.04 -72.54 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161419364.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.671 kcal (2) G-P(sol) polarization free energy of solvation -74.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds