Wall clock time and date at job start Tue Mar 31 2020 05:59:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.46799 * 2 1 4 4 C 1.53001 * 109.47120 * 180.02562 * 3 2 1 5 5 H 1.08999 * 110.05534 * 306.34408 * 4 3 2 6 6 C 1.54368 * 110.04794 * 67.81558 * 4 3 2 7 7 C 1.54897 * 104.19795 * 142.90999 * 6 4 3 8 8 C 1.54892 * 102.74900 * 322.03408 * 7 6 4 9 9 C 1.53872 * 110.03431 * 184.92799 * 4 3 2 10 10 H 1.09002 * 110.03360 * 121.37784 * 9 4 3 11 11 C 1.50701 * 110.03165 * 0.02562 * 9 4 3 12 12 O 1.21281 * 119.99590 * 274.98977 * 11 9 4 13 13 N 1.34773 * 120.00126 * 94.99014 * 11 9 4 14 14 C 1.46509 * 119.99969 * 180.02562 * 13 11 9 15 15 C 1.52993 * 109.47146 * 180.02562 * 14 13 11 16 16 C 1.52998 * 109.47126 * 179.97438 * 15 14 13 17 17 N 1.46502 * 109.47180 * 179.97438 * 16 15 14 18 18 C 1.36937 * 120.00262 * 180.02562 * 17 16 15 19 19 H 1.08004 * 119.99697 * 359.97438 * 18 17 16 20 20 C 1.38811 * 120.00270 * 180.02562 * 18 17 16 21 21 N 1.31618 * 119.99643 * 180.02562 * 20 18 17 22 22 Si 1.86802 * 120.00060 * 359.97438 * 20 18 17 23 23 H 1.48498 * 109.46662 * 90.00049 * 22 20 18 24 24 H 1.48501 * 109.47209 * 210.00300 * 22 20 18 25 25 H 1.48501 * 109.46840 * 330.00536 * 22 20 18 26 26 H 1.09000 * 109.47448 * 60.00064 * 1 2 3 27 27 H 1.09004 * 109.46755 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.47232 * 300.00014 * 1 2 3 29 29 H 1.08996 * 109.47048 * 240.00001 * 2 1 3 30 30 H 1.09001 * 109.47067 * 119.99558 * 2 1 3 31 31 H 1.08996 * 109.47779 * 59.99897 * 3 2 1 32 32 H 1.09001 * 109.46951 * 299.99629 * 3 2 1 33 33 H 1.09006 * 110.50809 * 24.22505 * 6 4 3 34 34 H 1.08995 * 110.46730 * 261.57671 * 6 4 3 35 35 H 1.08993 * 110.75561 * 203.71724 * 7 6 4 36 36 H 1.09003 * 110.75336 * 80.34844 * 7 6 4 37 37 H 1.09004 * 110.48493 * 279.26409 * 8 7 6 38 38 H 1.08998 * 110.60076 * 156.67199 * 8 7 6 39 39 H 0.96995 * 120.00398 * 0.02562 * 13 11 9 40 40 H 1.08997 * 109.47222 * 59.99978 * 14 13 11 41 41 H 1.09007 * 109.46730 * 299.99740 * 14 13 11 42 42 H 1.09007 * 109.47329 * 59.99720 * 15 14 13 43 43 H 1.09005 * 109.47190 * 299.99860 * 15 14 13 44 44 H 1.08997 * 109.47096 * 59.99838 * 16 15 14 45 45 H 1.08994 * 109.47470 * 299.99752 * 16 15 14 46 46 H 0.97000 * 120.00349 * 359.97438 * 17 16 15 47 47 H 0.97008 * 119.99863 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4426 -0.0006 5 1 3.9441 0.8357 0.8238 6 6 4.0986 0.8953 -1.3437 7 6 5.3539 1.7543 -1.6363 8 6 4.9277 3.1605 -1.1464 9 6 4.0970 2.8829 0.1235 10 1 4.7263 2.9752 1.0088 11 6 2.9437 3.8492 0.2081 12 8 2.4200 4.2585 -0.8063 13 7 2.4943 4.2585 1.4110 14 6 1.3727 5.1975 1.4932 15 6 1.0648 5.4969 2.9616 16 6 -0.1061 6.4779 3.0474 17 7 -0.4013 6.7642 4.4536 18 6 -1.4177 7.6222 4.7789 19 1 -2.0015 8.0882 3.9989 20 6 -1.6971 7.8938 6.1112 21 7 -2.6744 8.7181 6.4238 22 14 -0.6869 7.0884 7.4604 23 1 0.4782 7.9491 7.7871 24 1 -1.5284 6.9137 8.6715 25 1 -0.2076 5.7621 6.9950 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.6766 1.9564 0.8899 32 1 1.6766 1.9563 -0.8900 33 1 3.3545 1.0273 -2.1293 34 1 4.3699 -0.1559 -1.2467 35 1 5.5729 1.7671 -2.7040 36 1 6.2111 1.3911 -1.0694 37 1 4.3174 3.6582 -1.9001 38 1 5.8026 3.7642 -0.9056 39 1 2.9134 3.9314 2.2223 40 1 0.4949 4.7574 1.0200 41 1 1.6357 6.1233 0.9814 42 1 1.9427 5.9372 3.4345 43 1 0.8020 4.5713 3.4738 44 1 -0.9841 6.0381 2.5745 45 1 0.1571 7.4035 2.5354 46 1 0.1227 6.3454 5.1542 47 1 -2.8699 8.9077 7.3549 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001161419366.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:00 Heat of formation + Delta-G solvation = -63.356350 kcal Electronic energy + Delta-G solvation = -22449.381800 eV Core-core repulsion = 19244.800347 eV Total energy + Delta-G solvation = -3204.581453 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.65585 -37.88214 -36.10056 -34.71441 -34.41066 -32.07863 -30.55950 -29.86594 -29.17024 -25.68878 -25.12706 -22.57387 -21.95231 -21.48597 -21.20588 -20.74325 -19.30341 -17.56392 -16.97151 -16.37449 -15.89462 -15.61911 -15.21201 -14.95509 -14.40707 -14.39298 -13.87696 -13.80079 -13.54100 -13.19905 -12.82214 -12.81035 -12.43713 -12.18154 -12.05849 -11.94467 -11.56112 -11.36373 -11.20407 -11.15081 -11.05009 -11.02657 -10.92737 -10.80610 -10.73200 -10.68311 -10.60357 -10.17689 -9.74315 -9.60072 -9.06551 -8.91520 -7.25694 -5.77997 -3.14125 2.58472 3.12296 3.35211 3.37561 3.43411 4.14845 4.25911 4.35316 4.57389 4.70930 4.80555 4.89590 4.95639 5.00573 5.10469 5.15355 5.19831 5.21632 5.28199 5.33663 5.41515 5.50238 5.52647 5.56966 5.63127 5.63499 5.67578 5.78714 5.80797 5.86148 5.88163 5.92427 5.95928 5.98588 6.09431 6.09861 6.13596 6.20010 6.42089 6.67671 6.70843 7.44791 7.98176 8.18288 8.40847 9.19544 9.91633 10.11160 11.40414 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.022590 B = 0.002986 C = 0.002838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.190711 B = 9374.032966 C = 9862.147484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.120 4.120 3 C -0.127 4.127 4 C -0.076 4.076 5 H 0.079 0.921 6 C -0.117 4.117 7 C -0.124 4.124 8 C -0.113 4.113 9 C -0.112 4.112 10 H 0.088 0.912 11 C 0.523 3.477 12 O -0.540 6.540 13 N -0.731 5.731 14 C 0.122 3.878 15 C -0.141 4.141 16 C 0.161 3.839 17 N -0.757 5.757 18 C -0.246 4.246 19 H 0.091 0.909 20 C 0.003 3.997 21 N -0.934 5.934 22 Si 0.887 3.113 23 H -0.284 1.284 24 H -0.290 1.290 25 H -0.278 1.278 26 H 0.054 0.946 27 H 0.052 0.948 28 H 0.055 0.945 29 H 0.061 0.939 30 H 0.059 0.941 31 H 0.065 0.935 32 H 0.074 0.926 33 H 0.070 0.930 34 H 0.066 0.934 35 H 0.068 0.932 36 H 0.066 0.934 37 H 0.085 0.915 38 H 0.067 0.933 39 H 0.399 0.601 40 H 0.069 0.931 41 H 0.069 0.931 42 H 0.067 0.933 43 H 0.067 0.933 44 H 0.029 0.971 45 H 0.030 0.970 46 H 0.360 0.640 47 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.304 -19.309 -14.590 29.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.158 4.158 3 C -0.165 4.165 4 C -0.095 4.095 5 H 0.097 0.903 6 C -0.155 4.155 7 C -0.161 4.161 8 C -0.151 4.151 9 C -0.133 4.133 10 H 0.106 0.894 11 C 0.310 3.690 12 O -0.417 6.417 13 N -0.382 5.382 14 C -0.002 4.002 15 C -0.180 4.180 16 C 0.033 3.967 17 N -0.403 5.403 18 C -0.375 4.375 19 H 0.108 0.892 20 C -0.193 4.193 21 N -0.582 5.582 22 Si 0.717 3.283 23 H -0.211 1.211 24 H -0.217 1.217 25 H -0.204 1.204 26 H 0.073 0.927 27 H 0.071 0.929 28 H 0.074 0.926 29 H 0.079 0.921 30 H 0.077 0.923 31 H 0.084 0.916 32 H 0.093 0.907 33 H 0.089 0.911 34 H 0.084 0.916 35 H 0.087 0.913 36 H 0.085 0.915 37 H 0.104 0.896 38 H 0.085 0.915 39 H 0.233 0.767 40 H 0.087 0.913 41 H 0.087 0.913 42 H 0.086 0.914 43 H 0.086 0.914 44 H 0.047 0.953 45 H 0.048 0.952 46 H 0.193 0.807 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 16.700 -18.827 -15.343 29.475 hybrid contribution 0.788 -0.587 1.670 1.937 sum 17.488 -19.414 -13.673 29.490 Atomic orbital electron populations 1.21780 0.95809 1.01432 1.02149 1.21504 0.95973 0.96584 1.01714 1.21961 0.94036 0.97308 1.03183 1.21727 0.95818 0.93233 0.98699 0.90310 1.22468 0.97363 0.98952 0.96692 1.22481 0.97615 0.94959 1.01053 1.22364 0.98950 0.97566 0.96228 1.22053 0.95511 0.94816 1.00954 0.89360 1.20413 0.84405 0.80905 0.83294 1.90684 1.58953 1.57175 1.34916 1.46188 1.35934 1.47738 1.08330 1.21318 0.88743 0.92806 0.97284 1.21989 1.00379 1.00906 0.94680 1.20495 0.93804 0.95219 0.87206 1.42690 1.40557 1.55642 1.01374 1.19076 1.07530 1.17771 0.93160 0.89151 1.24691 0.98346 0.99401 0.96814 1.69707 1.31985 1.39070 1.17430 0.86514 0.79993 0.79234 0.82564 1.21067 1.21685 1.20400 0.92703 0.92893 0.92615 0.92050 0.92265 0.91593 0.90747 0.91117 0.91566 0.91317 0.91521 0.89594 0.91474 0.76719 0.91314 0.91292 0.91393 0.91417 0.95264 0.95192 0.80704 0.93027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 9.91 37.16 0.37 -0.97 16 2 C -0.12 -0.97 5.79 -26.73 -0.15 -1.13 16 3 C -0.13 -1.19 3.40 -26.73 -0.09 -1.28 16 4 C -0.08 -0.59 2.93 -89.45 -0.26 -0.85 16 5 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 6 C -0.12 -0.84 5.54 -25.01 -0.14 -0.98 16 7 C -0.12 -0.84 6.91 -24.73 -0.17 -1.01 16 8 C -0.11 -0.96 6.32 -25.07 -0.16 -1.12 16 9 C -0.11 -0.96 3.29 -90.65 -0.30 -1.26 16 10 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 11 C 0.52 6.13 4.67 -10.99 -0.05 6.07 16 12 O -0.54 -8.36 14.97 5.56 0.08 -8.28 16 13 N -0.73 -7.86 5.09 -60.29 -0.31 -8.17 16 14 C 0.12 1.58 5.67 -4.04 -0.02 1.55 16 15 C -0.14 -2.00 5.44 -26.74 -0.15 -2.14 16 16 C 0.16 3.06 6.26 -4.04 -0.03 3.03 16 17 N -0.76 -18.08 5.41 -59.91 -0.32 -18.40 16 18 C -0.25 -7.05 10.47 -15.06 -0.16 -7.21 16 19 H 0.09 2.78 8.06 -52.48 -0.42 2.35 16 20 C 0.00 0.09 5.50 -17.43 -0.10 0.00 16 21 N -0.93 -29.58 13.97 55.49 0.78 -28.80 16 22 Si 0.89 22.06 27.74 -169.99 -4.71 17.34 16 23 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 24 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 25 H -0.28 -6.44 6.52 56.52 0.37 -6.07 16 26 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 27 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 29 H 0.06 0.46 7.51 -51.93 -0.39 0.07 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.07 0.68 6.88 -51.93 -0.36 0.32 16 32 H 0.07 0.87 7.05 -51.93 -0.37 0.50 16 33 H 0.07 0.58 7.76 -51.93 -0.40 0.17 16 34 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 35 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 36 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 37 H 0.09 0.93 6.91 -51.93 -0.36 0.57 16 38 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.40 3.33 8.47 -40.82 -0.35 2.98 16 40 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 41 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 42 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 43 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 44 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 45 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 46 H 0.36 8.28 5.53 -40.82 -0.23 8.05 16 47 H 0.26 7.80 8.31 -40.82 -0.34 7.46 16 LS Contribution 366.75 15.07 5.53 5.53 Total: -1.00 -33.18 366.75 -9.17 -42.34 By element: Atomic # 1 Polarization: 14.54 SS G_CDS: -8.80 Total: 5.74 kcal Atomic # 6 Polarization: -5.89 SS G_CDS: -1.40 Total: -7.29 kcal Atomic # 7 Polarization: -55.52 SS G_CDS: 0.14 Total: -55.38 kcal Atomic # 8 Polarization: -8.36 SS G_CDS: 0.08 Total: -8.28 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -4.71 Total: 17.34 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -33.18 -9.17 -42.34 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161419366.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.012 kcal (2) G-P(sol) polarization free energy of solvation -33.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds