Wall clock time and date at job start Tue Mar 31 2020 05:59:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.46799 * 2 1 4 4 C 1.53001 * 109.47120 * 180.02562 * 3 2 1 5 5 H 1.08999 * 110.05534 * 306.34408 * 4 3 2 6 6 C 1.54368 * 110.04794 * 67.81558 * 4 3 2 7 7 C 1.54897 * 104.19795 * 142.90999 * 6 4 3 8 8 C 1.54892 * 102.74900 * 322.03408 * 7 6 4 9 9 C 1.53872 * 110.03431 * 184.92799 * 4 3 2 10 10 H 1.09002 * 110.03360 * 121.37784 * 9 4 3 11 11 C 1.50701 * 110.03165 * 0.02562 * 9 4 3 12 12 O 1.21281 * 119.99590 * 274.98977 * 11 9 4 13 13 N 1.34773 * 120.00126 * 94.99014 * 11 9 4 14 14 C 1.46509 * 119.99969 * 180.02562 * 13 11 9 15 15 C 1.52993 * 109.47146 * 180.02562 * 14 13 11 16 16 C 1.52998 * 109.47126 * 179.97438 * 15 14 13 17 17 N 1.46502 * 109.47180 * 179.97438 * 16 15 14 18 18 C 1.36937 * 120.00262 * 180.02562 * 17 16 15 19 19 H 1.08004 * 119.99697 * 359.97438 * 18 17 16 20 20 C 1.38811 * 120.00270 * 180.02562 * 18 17 16 21 21 N 1.31618 * 119.99643 * 180.02562 * 20 18 17 22 22 Si 1.86802 * 120.00060 * 359.97438 * 20 18 17 23 23 H 1.48498 * 109.46662 * 90.00049 * 22 20 18 24 24 H 1.48501 * 109.47209 * 210.00300 * 22 20 18 25 25 H 1.48501 * 109.46840 * 330.00536 * 22 20 18 26 26 H 1.09000 * 109.47448 * 60.00064 * 1 2 3 27 27 H 1.09004 * 109.46755 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.47232 * 300.00014 * 1 2 3 29 29 H 1.08996 * 109.47048 * 240.00001 * 2 1 3 30 30 H 1.09001 * 109.47067 * 119.99558 * 2 1 3 31 31 H 1.08996 * 109.47779 * 59.99897 * 3 2 1 32 32 H 1.09001 * 109.46951 * 299.99629 * 3 2 1 33 33 H 1.09006 * 110.50809 * 24.22505 * 6 4 3 34 34 H 1.08995 * 110.46730 * 261.57671 * 6 4 3 35 35 H 1.08993 * 110.75561 * 203.71724 * 7 6 4 36 36 H 1.09003 * 110.75336 * 80.34844 * 7 6 4 37 37 H 1.09004 * 110.48493 * 279.26409 * 8 7 6 38 38 H 1.08998 * 110.60076 * 156.67199 * 8 7 6 39 39 H 0.96995 * 120.00398 * 0.02562 * 13 11 9 40 40 H 1.08997 * 109.47222 * 59.99978 * 14 13 11 41 41 H 1.09007 * 109.46730 * 299.99740 * 14 13 11 42 42 H 1.09007 * 109.47329 * 59.99720 * 15 14 13 43 43 H 1.09005 * 109.47190 * 299.99860 * 15 14 13 44 44 H 1.08997 * 109.47096 * 59.99838 * 16 15 14 45 45 H 1.08994 * 109.47470 * 299.99752 * 16 15 14 46 46 H 0.97000 * 120.00349 * 359.97438 * 17 16 15 47 47 H 0.97008 * 119.99863 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4426 -0.0006 5 1 3.9441 0.8357 0.8238 6 6 4.0986 0.8953 -1.3437 7 6 5.3539 1.7543 -1.6363 8 6 4.9277 3.1605 -1.1464 9 6 4.0970 2.8829 0.1235 10 1 4.7263 2.9752 1.0088 11 6 2.9437 3.8492 0.2081 12 8 2.4200 4.2585 -0.8063 13 7 2.4943 4.2585 1.4110 14 6 1.3727 5.1975 1.4932 15 6 1.0648 5.4969 2.9616 16 6 -0.1061 6.4779 3.0474 17 7 -0.4013 6.7642 4.4536 18 6 -1.4177 7.6222 4.7789 19 1 -2.0015 8.0882 3.9989 20 6 -1.6971 7.8938 6.1112 21 7 -2.6744 8.7181 6.4238 22 14 -0.6869 7.0884 7.4604 23 1 0.4782 7.9491 7.7871 24 1 -1.5284 6.9137 8.6715 25 1 -0.2076 5.7621 6.9950 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.6766 1.9564 0.8899 32 1 1.6766 1.9563 -0.8900 33 1 3.3545 1.0273 -2.1293 34 1 4.3699 -0.1559 -1.2467 35 1 5.5729 1.7671 -2.7040 36 1 6.2111 1.3911 -1.0694 37 1 4.3174 3.6582 -1.9001 38 1 5.8026 3.7642 -0.9056 39 1 2.9134 3.9314 2.2223 40 1 0.4949 4.7574 1.0200 41 1 1.6357 6.1233 0.9814 42 1 1.9427 5.9372 3.4345 43 1 0.8020 4.5713 3.4738 44 1 -0.9841 6.0381 2.5745 45 1 0.1571 7.4035 2.5354 46 1 0.1227 6.3454 5.1542 47 1 -2.8699 8.9077 7.3549 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001161419366.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:00 Heat of formation + Delta-G solvation = -84.879679 kcal Electronic energy + Delta-G solvation = -22450.315121 eV Core-core repulsion = 19244.800347 eV Total energy + Delta-G solvation = -3205.514774 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.49233 -38.69586 -37.54027 -35.95429 -35.31191 -33.89890 -31.99444 -30.63726 -30.03640 -27.07046 -25.99341 -24.20934 -22.74359 -22.59119 -22.41036 -21.36294 -20.24693 -19.53311 -17.83101 -17.26249 -16.91217 -16.58493 -16.47680 -15.93891 -15.81743 -15.42611 -15.25609 -14.83614 -14.53722 -14.47737 -14.06731 -13.81447 -13.78786 -13.34707 -12.91427 -12.88264 -12.70387 -12.56390 -12.48999 -12.24472 -12.09315 -12.02200 -11.93585 -11.82300 -11.76227 -11.66060 -11.47138 -11.33751 -11.29759 -10.99603 -10.69493 -10.06248 -9.33918 -8.04664 -5.40015 1.37462 1.43031 1.50390 1.67901 2.20541 2.48097 3.26404 3.48641 3.55019 3.63880 3.70947 3.99345 4.05379 4.12374 4.22232 4.24383 4.31614 4.38190 4.47337 4.54986 4.62211 4.64915 4.69309 4.69639 4.72569 4.77327 4.86769 4.92576 4.98686 5.03158 5.07815 5.19426 5.22983 5.24648 5.25868 5.26323 5.32599 5.41626 5.45153 5.48730 5.56497 5.72781 6.18853 6.60254 7.05538 7.30448 7.79726 8.01116 9.16916 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.022590 B = 0.002986 C = 0.002838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.190711 B = 9374.032966 C = 9862.147484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.116 4.116 3 C -0.123 4.123 4 C -0.072 4.072 5 H 0.104 0.896 6 C -0.117 4.117 7 C -0.117 4.117 8 C -0.117 4.117 9 C -0.108 4.108 10 H 0.118 0.882 11 C 0.521 3.479 12 O -0.585 6.585 13 N -0.720 5.720 14 C 0.132 3.868 15 C -0.121 4.121 16 C 0.154 3.846 17 N -0.758 5.758 18 C -0.243 4.243 19 H 0.052 0.948 20 C -0.067 4.067 21 N -0.985 5.985 22 Si 0.964 3.036 23 H -0.275 1.275 24 H -0.295 1.295 25 H -0.246 1.246 26 H 0.042 0.958 27 H 0.064 0.936 28 H 0.046 0.954 29 H 0.068 0.932 30 H 0.074 0.926 31 H 0.055 0.945 32 H 0.042 0.958 33 H 0.051 0.949 34 H 0.085 0.915 35 H 0.069 0.931 36 H 0.087 0.913 37 H 0.054 0.946 38 H 0.078 0.922 39 H 0.415 0.585 40 H 0.056 0.944 41 H 0.057 0.943 42 H 0.083 0.917 43 H 0.081 0.919 44 H 0.022 0.978 45 H 0.024 0.976 46 H 0.369 0.631 47 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.487 -22.097 -13.380 32.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.153 4.153 3 C -0.161 4.161 4 C -0.091 4.091 5 H 0.122 0.878 6 C -0.155 4.155 7 C -0.155 4.155 8 C -0.155 4.155 9 C -0.129 4.129 10 H 0.136 0.864 11 C 0.309 3.691 12 O -0.465 6.465 13 N -0.372 5.372 14 C 0.007 3.993 15 C -0.159 4.159 16 C 0.028 3.972 17 N -0.404 5.404 18 C -0.374 4.374 19 H 0.070 0.930 20 C -0.259 4.259 21 N -0.636 5.636 22 Si 0.790 3.210 23 H -0.201 1.201 24 H -0.222 1.222 25 H -0.170 1.170 26 H 0.061 0.939 27 H 0.083 0.917 28 H 0.065 0.935 29 H 0.087 0.913 30 H 0.092 0.908 31 H 0.074 0.926 32 H 0.061 0.939 33 H 0.070 0.930 34 H 0.103 0.897 35 H 0.088 0.912 36 H 0.105 0.895 37 H 0.073 0.927 38 H 0.097 0.903 39 H 0.252 0.748 40 H 0.074 0.926 41 H 0.076 0.924 42 H 0.101 0.899 43 H 0.099 0.901 44 H 0.040 0.960 45 H 0.042 0.958 46 H 0.203 0.797 47 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 19.927 -21.654 -14.152 32.654 hybrid contribution -0.288 0.346 1.161 1.246 sum 19.639 -21.308 -12.990 31.757 Atomic orbital electron populations 1.21803 0.96628 1.01866 1.01107 1.21488 0.95247 0.95840 1.02757 1.21880 0.95475 0.97685 1.01070 1.21781 0.94398 0.92993 0.99942 0.87795 1.22469 0.97077 1.00130 0.95790 1.22478 0.97989 0.93519 1.01494 1.22369 0.98831 0.98734 0.95521 1.22156 0.94394 0.94197 1.02199 0.86396 1.21049 0.84716 0.80729 0.82620 1.90672 1.60507 1.58824 1.36500 1.46037 1.35135 1.46998 1.09018 1.21027 0.89184 0.92817 0.96258 1.21751 0.98620 1.00025 0.95498 1.20648 0.95678 0.96313 0.84609 1.42646 1.39416 1.54808 1.03535 1.19045 1.08003 1.17899 0.92487 0.93021 1.25640 0.99979 1.00480 0.99769 1.69909 1.34402 1.41256 1.17983 0.85287 0.78024 0.79535 0.78185 1.20132 1.22207 1.16991 0.93907 0.91706 0.93526 0.91283 0.90769 0.92629 0.93945 0.92968 0.89683 0.91190 0.89489 0.92713 0.90330 0.74834 0.92604 0.92423 0.89852 0.90053 0.95984 0.95809 0.79726 0.93209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.62 9.91 71.98 0.71 -1.91 16 2 C -0.12 -1.67 5.79 30.59 0.18 -1.50 16 3 C -0.12 -2.18 3.40 30.59 0.10 -2.08 16 4 C -0.07 -0.94 2.93 -10.03 -0.03 -0.97 16 5 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 6 C -0.12 -1.42 5.54 31.71 0.18 -1.24 16 7 C -0.12 -1.31 6.91 31.89 0.22 -1.09 16 8 C -0.12 -1.81 6.32 31.67 0.20 -1.61 16 9 C -0.11 -1.60 3.29 -10.82 -0.04 -1.64 16 10 H 0.12 1.08 8.14 -2.39 -0.02 1.06 16 11 C 0.52 11.73 4.67 87.66 0.41 12.14 16 12 O -0.58 -18.64 14.97 -3.03 -0.05 -18.69 16 13 N -0.72 -14.19 5.09 -463.05 -2.36 -16.54 16 14 C 0.13 3.29 5.67 86.38 0.49 3.78 16 15 C -0.12 -3.15 5.44 30.59 0.17 -2.98 16 16 C 0.15 5.80 6.26 86.38 0.54 6.34 16 17 N -0.76 -35.36 5.41 -343.46 -1.86 -37.22 16 18 C -0.24 -14.19 10.47 84.03 0.88 -13.31 16 19 H 0.05 3.33 8.06 -2.91 -0.02 3.31 16 20 C -0.07 -4.01 5.50 84.86 0.47 -3.54 16 21 N -0.99 -63.89 13.97 21.65 0.30 -63.59 16 22 Si 0.96 44.78 27.74 68.60 1.90 46.68 16 23 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 24 H -0.30 -13.92 7.11 99.48 0.71 -13.21 16 25 H -0.25 -10.02 6.52 99.48 0.65 -9.37 16 26 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 27 H 0.06 0.91 8.14 -2.38 -0.02 0.89 16 28 H 0.05 0.85 8.14 -2.38 -0.02 0.83 16 29 H 0.07 0.90 7.51 -2.39 -0.02 0.88 16 30 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.06 1.08 6.88 -2.39 -0.02 1.06 16 32 H 0.04 1.02 7.05 -2.39 -0.02 1.00 16 33 H 0.05 0.83 7.76 -2.38 -0.02 0.81 16 34 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 35 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 36 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 37 H 0.05 1.21 6.91 -2.38 -0.02 1.19 16 38 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 39 H 0.41 5.54 8.47 -92.71 -0.79 4.76 16 40 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 41 H 0.06 1.58 8.14 -2.38 -0.02 1.56 16 42 H 0.08 1.97 8.14 -2.38 -0.02 1.95 16 43 H 0.08 1.95 8.14 -2.38 -0.02 1.93 16 44 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 45 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 46 H 0.37 15.86 5.53 -92.71 -0.51 15.35 16 47 H 0.26 15.89 8.31 -92.70 -0.77 15.12 16 Total: -1.00 -74.61 366.75 2.00 -72.61 By element: Atomic # 1 Polarization: 26.76 SS G_CDS: -0.43 Total: 26.34 kcal Atomic # 6 Polarization: -14.07 SS G_CDS: 4.48 Total: -9.59 kcal Atomic # 7 Polarization: -113.44 SS G_CDS: -3.91 Total: -117.35 kcal Atomic # 8 Polarization: -18.64 SS G_CDS: -0.05 Total: -18.69 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 1.90 Total: 46.68 kcal Total: -74.61 2.00 -72.61 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161419366.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.268 kcal (2) G-P(sol) polarization free energy of solvation -74.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds