Wall clock time and date at job start Tue Mar 31 2020 05:59:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.46787 * 2 1 4 4 C 1.52999 * 109.47152 * 180.02562 * 3 2 1 5 5 H 1.09008 * 110.05178 * 306.41127 * 4 3 2 6 6 C 1.54263 * 110.03664 * 67.82890 * 4 3 2 7 7 C 1.54884 * 104.19695 * 142.89739 * 6 4 3 8 8 C 1.54887 * 102.74892 * 322.05843 * 7 6 4 9 9 C 1.53871 * 110.03237 * 185.00249 * 4 3 2 10 10 H 1.09001 * 110.03386 * 0.04110 * 9 4 3 11 11 C 1.50703 * 110.03467 * 121.42741 * 9 4 3 12 12 O 1.21273 * 119.99963 * 359.97438 * 11 9 4 13 13 N 1.34779 * 119.99944 * 179.97438 * 11 9 4 14 14 C 1.46499 * 119.99872 * 179.97438 * 13 11 9 15 15 C 1.53000 * 109.46840 * 179.97438 * 14 13 11 16 16 C 1.52997 * 109.47060 * 180.02562 * 15 14 13 17 17 N 1.46500 * 109.47473 * 180.02562 * 16 15 14 18 18 C 1.36939 * 120.00037 * 179.97438 * 17 16 15 19 19 H 1.07993 * 120.00126 * 0.02562 * 18 17 16 20 20 C 1.38817 * 119.99653 * 179.97438 * 18 17 16 21 21 N 1.31620 * 119.99966 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 119.99758 * 179.97438 * 20 18 17 23 23 H 1.48505 * 109.46700 * 60.00563 * 22 20 18 24 24 H 1.48496 * 109.46956 * 179.97438 * 22 20 18 25 25 H 1.48498 * 109.47581 * 300.00489 * 22 20 18 26 26 H 1.08993 * 109.47260 * 60.00163 * 1 2 3 27 27 H 1.09006 * 109.46813 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47187 * 299.99710 * 1 2 3 29 29 H 1.08998 * 109.47187 * 240.00290 * 2 1 3 30 30 H 1.08996 * 109.47511 * 119.99386 * 2 1 3 31 31 H 1.08998 * 109.47021 * 60.00188 * 3 2 1 32 32 H 1.09009 * 109.46848 * 299.99853 * 3 2 1 33 33 H 1.09000 * 110.48770 * 261.57768 * 6 4 3 34 34 H 1.08996 * 110.48365 * 24.21826 * 6 4 3 35 35 H 1.09001 * 110.75680 * 80.37214 * 7 6 4 36 36 H 1.09002 * 110.75743 * 203.74894 * 7 6 4 37 37 H 1.08997 * 110.49014 * 279.26542 * 8 7 6 38 38 H 1.09005 * 110.48728 * 156.61854 * 8 7 6 39 39 H 0.97005 * 119.99680 * 359.97438 * 13 11 9 40 40 H 1.09001 * 109.46813 * 60.00258 * 14 13 11 41 41 H 1.08992 * 109.47397 * 300.00319 * 14 13 11 42 42 H 1.09002 * 109.47398 * 300.00326 * 15 14 13 43 43 H 1.09001 * 109.47194 * 60.00507 * 15 14 13 44 44 H 1.09002 * 109.47153 * 300.00319 * 16 15 14 45 45 H 1.08998 * 109.47533 * 59.99948 * 16 15 14 46 46 H 0.97004 * 119.99396 * 0.02562 * 17 16 15 47 47 H 0.97001 * 119.99359 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4427 -0.0006 5 1 3.9441 0.8347 0.8232 6 6 4.0979 0.8960 -1.3430 7 6 5.3530 1.7551 -1.6358 8 6 4.9269 3.1610 -1.1450 9 6 4.0970 2.8828 0.1254 10 1 3.2628 3.5816 0.1878 11 6 4.9679 3.0086 1.3488 12 8 5.1564 2.0450 2.0607 13 7 5.5373 4.1920 1.6519 14 6 6.3835 4.3144 2.8415 15 6 6.9013 5.7498 2.9534 16 6 7.7856 5.8776 4.1954 17 7 8.2809 7.2521 4.3031 18 6 9.0972 7.6062 5.3440 19 1 9.3761 6.8721 6.0853 20 6 9.5669 8.9085 5.4456 21 7 9.2273 9.8030 4.5418 22 14 10.6798 9.3917 6.8659 23 1 11.9142 8.5669 6.8302 24 1 11.0407 10.8272 6.7457 25 1 9.9700 9.1651 8.1504 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5137 0.8900 31 1 1.6766 1.9563 0.8900 32 1 1.6765 1.9564 -0.8901 33 1 4.3692 -0.1553 -1.2466 34 1 3.3534 1.0283 -2.1281 35 1 6.2105 1.3917 -1.0695 36 1 5.5714 1.7686 -2.7036 37 1 4.3163 3.6592 -1.8980 38 1 5.8032 3.7628 -0.9039 39 1 5.3869 4.9626 1.0822 40 1 7.2275 3.6295 2.7590 41 1 5.8008 4.0677 3.7288 42 1 7.4842 5.9961 2.0659 43 1 6.0576 6.4350 3.0357 44 1 7.2030 5.6311 5.0831 45 1 8.6292 5.1924 4.1129 46 1 8.0300 7.9115 3.6373 47 1 9.5553 10.7131 4.6130 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001161419367.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:04 Heat of formation + Delta-G solvation = -70.314536 kcal Electronic energy + Delta-G solvation = -21885.789025 eV Core-core repulsion = 18680.905843 eV Total energy + Delta-G solvation = -3204.883182 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.45134 -37.95762 -35.95956 -34.74685 -34.30540 -32.02452 -30.14450 -29.98283 -28.82970 -25.63703 -25.05862 -22.85906 -21.88248 -21.63191 -21.15522 -20.32208 -19.34767 -17.35500 -16.85068 -16.11285 -15.97930 -15.49417 -15.27456 -14.94923 -14.45274 -14.15069 -13.89191 -13.57930 -13.38028 -13.24907 -13.00551 -12.84406 -12.50811 -12.41787 -11.75521 -11.62397 -11.49736 -11.35551 -11.14552 -11.12576 -10.94229 -10.90482 -10.82001 -10.78906 -10.68742 -10.60699 -10.58425 -10.11499 -9.77087 -9.63243 -9.02255 -8.87690 -6.93862 -5.77380 -3.06310 2.63339 3.17028 3.44619 3.48560 3.49927 4.19140 4.31337 4.45791 4.59165 4.72936 4.75889 4.86763 4.93669 5.09877 5.14689 5.23689 5.27987 5.31200 5.32962 5.40022 5.42140 5.54925 5.57295 5.58721 5.60919 5.63722 5.68608 5.75681 5.85932 5.86604 5.97332 6.00754 6.03685 6.06932 6.07499 6.19624 6.29480 6.32073 6.51073 6.78859 6.83126 7.50912 7.69514 8.22616 8.41656 9.52616 10.09743 10.44527 11.45558 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.036645 B = 0.002301 C = 0.002246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 763.899847 B =12164.578479 C =12464.750127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.125 4.125 3 C -0.111 4.111 4 C -0.087 4.087 5 H 0.099 0.901 6 C -0.116 4.116 7 C -0.126 4.126 8 C -0.116 4.116 9 C -0.112 4.112 10 H 0.098 0.902 11 C 0.517 3.483 12 O -0.541 6.541 13 N -0.728 5.728 14 C 0.122 3.878 15 C -0.137 4.137 16 C 0.156 3.844 17 N -0.734 5.734 18 C -0.241 4.241 19 H 0.071 0.929 20 C -0.015 4.015 21 N -0.935 5.935 22 Si 0.909 3.091 23 H -0.286 1.286 24 H -0.291 1.291 25 H -0.286 1.286 26 H 0.052 0.948 27 H 0.052 0.948 28 H 0.053 0.947 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.065 0.935 34 H 0.066 0.934 35 H 0.068 0.932 36 H 0.068 0.932 37 H 0.076 0.924 38 H 0.071 0.929 39 H 0.400 0.600 40 H 0.067 0.933 41 H 0.067 0.933 42 H 0.068 0.932 43 H 0.068 0.932 44 H 0.021 0.979 45 H 0.021 0.979 46 H 0.383 0.617 47 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.722 -17.379 -15.432 28.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.162 4.162 3 C -0.148 4.148 4 C -0.106 4.106 5 H 0.117 0.883 6 C -0.154 4.154 7 C -0.164 4.164 8 C -0.154 4.154 9 C -0.133 4.133 10 H 0.116 0.884 11 C 0.303 3.697 12 O -0.418 6.418 13 N -0.379 5.379 14 C -0.002 4.002 15 C -0.175 4.175 16 C 0.028 3.972 17 N -0.378 5.378 18 C -0.372 4.372 19 H 0.089 0.911 20 C -0.211 4.211 21 N -0.583 5.583 22 Si 0.740 3.260 23 H -0.212 1.212 24 H -0.217 1.217 25 H -0.212 1.212 26 H 0.071 0.929 27 H 0.071 0.929 28 H 0.072 0.928 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.084 0.916 34 H 0.085 0.915 35 H 0.086 0.914 36 H 0.086 0.914 37 H 0.095 0.905 38 H 0.089 0.911 39 H 0.234 0.766 40 H 0.085 0.915 41 H 0.085 0.915 42 H 0.087 0.913 43 H 0.087 0.913 44 H 0.039 0.961 45 H 0.039 0.961 46 H 0.217 0.783 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -15.474 -18.069 -14.740 27.986 hybrid contribution 0.480 1.082 0.338 1.231 sum -14.994 -16.987 -14.402 26.848 Atomic orbital electron populations 1.21782 0.96087 1.01459 1.01703 1.21534 0.95547 0.96966 1.02175 1.21721 0.94417 0.96924 1.01774 1.21849 0.95001 0.94342 0.99396 0.88334 1.22430 0.96993 0.99370 0.96578 1.22511 0.98201 0.94813 1.00859 1.22384 0.99416 0.98014 0.95552 1.22014 0.98168 0.99727 0.93410 0.88392 1.20548 0.80082 0.82640 0.86465 1.90658 1.61583 1.37713 1.51872 1.46085 1.50858 1.12188 1.28757 1.21349 0.93927 0.97739 0.87149 1.21940 1.00431 0.94501 1.00666 1.20520 0.94379 0.88705 0.93589 1.42333 1.58630 1.05835 1.30998 1.19205 1.21205 0.94401 1.02359 0.91144 1.24761 1.01252 0.96174 0.98923 1.69653 1.49378 1.03295 1.36023 0.86230 0.80562 0.77255 0.81926 1.21230 1.21667 1.21223 0.92890 0.92918 0.92794 0.91962 0.91921 0.92048 0.92048 0.91628 0.91547 0.91357 0.91357 0.90548 0.91052 0.76572 0.91463 0.91454 0.91335 0.91331 0.96084 0.96074 0.78306 0.93459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 9.91 37.16 0.37 -0.61 16 2 C -0.12 -0.90 5.79 -26.73 -0.15 -1.05 16 3 C -0.11 -0.85 4.34 -26.73 -0.12 -0.96 16 4 C -0.09 -0.78 2.53 -89.51 -0.23 -1.01 16 5 H 0.10 1.16 6.39 -51.92 -0.33 0.83 16 6 C -0.12 -0.89 5.53 -25.08 -0.14 -1.03 16 7 C -0.13 -1.00 6.91 -24.74 -0.17 -1.17 16 8 C -0.12 -0.88 6.35 -25.07 -0.16 -1.04 16 9 C -0.11 -1.01 2.95 -90.65 -0.27 -1.27 16 10 H 0.10 0.75 7.67 -51.93 -0.40 0.35 16 11 C 0.52 6.46 7.07 -10.98 -0.08 6.38 16 12 O -0.54 -8.85 15.21 5.56 0.08 -8.76 16 13 N -0.73 -8.47 5.26 -60.30 -0.32 -8.78 16 14 C 0.12 1.69 5.67 -4.04 -0.02 1.67 16 15 C -0.14 -2.11 5.44 -26.73 -0.15 -2.26 16 16 C 0.16 3.15 6.26 -4.04 -0.03 3.13 16 17 N -0.73 -18.82 5.60 -59.91 -0.34 -19.16 16 18 C -0.24 -6.85 9.99 -15.06 -0.15 -7.00 16 19 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 20 C -0.02 -0.44 5.50 -17.43 -0.10 -0.54 16 21 N -0.93 -28.41 13.06 55.49 0.72 -27.69 16 22 Si 0.91 22.59 29.55 -169.99 -5.02 17.57 16 23 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 24 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 25 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 26 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 27 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.06 0.42 7.51 -51.93 -0.39 0.03 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.06 0.41 8.00 -51.92 -0.42 0.00 16 33 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.07 0.44 7.76 -51.93 -0.40 0.03 16 35 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 37 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 38 H 0.07 0.57 7.50 -51.93 -0.39 0.18 16 39 H 0.40 3.69 8.37 -40.82 -0.34 3.35 16 40 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 41 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 42 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 43 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 44 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 45 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 46 H 0.38 10.20 7.67 -40.82 -0.31 9.89 16 47 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 373.38 15.07 5.63 5.63 Total: -1.00 -32.49 373.38 -9.49 -41.98 By element: Atomic # 1 Polarization: 14.86 SS G_CDS: -8.87 Total: 5.99 kcal Atomic # 6 Polarization: -5.39 SS G_CDS: -1.38 Total: -6.78 kcal Atomic # 7 Polarization: -55.70 SS G_CDS: 0.07 Total: -55.63 kcal Atomic # 8 Polarization: -8.85 SS G_CDS: 0.08 Total: -8.76 kcal Atomic # 14 Polarization: 22.59 SS G_CDS: -5.02 Total: 17.57 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -32.49 -9.49 -41.98 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161419367.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.335 kcal (2) G-P(sol) polarization free energy of solvation -32.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds