Wall clock time and date at job start Tue Mar 31 2020 05:59:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.46787 * 2 1 4 4 C 1.52999 * 109.47152 * 180.02562 * 3 2 1 5 5 H 1.09008 * 110.05178 * 306.41127 * 4 3 2 6 6 C 1.54263 * 110.03664 * 67.82890 * 4 3 2 7 7 C 1.54884 * 104.19695 * 142.89739 * 6 4 3 8 8 C 1.54887 * 102.74892 * 322.05843 * 7 6 4 9 9 C 1.53871 * 110.03237 * 185.00249 * 4 3 2 10 10 H 1.09001 * 110.03386 * 0.04110 * 9 4 3 11 11 C 1.50703 * 110.03467 * 121.42741 * 9 4 3 12 12 O 1.21273 * 119.99963 * 359.97438 * 11 9 4 13 13 N 1.34779 * 119.99944 * 179.97438 * 11 9 4 14 14 C 1.46499 * 119.99872 * 179.97438 * 13 11 9 15 15 C 1.53000 * 109.46840 * 179.97438 * 14 13 11 16 16 C 1.52997 * 109.47060 * 180.02562 * 15 14 13 17 17 N 1.46500 * 109.47473 * 180.02562 * 16 15 14 18 18 C 1.36939 * 120.00037 * 179.97438 * 17 16 15 19 19 H 1.07993 * 120.00126 * 0.02562 * 18 17 16 20 20 C 1.38817 * 119.99653 * 179.97438 * 18 17 16 21 21 N 1.31620 * 119.99966 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 119.99758 * 179.97438 * 20 18 17 23 23 H 1.48505 * 109.46700 * 60.00563 * 22 20 18 24 24 H 1.48496 * 109.46956 * 179.97438 * 22 20 18 25 25 H 1.48498 * 109.47581 * 300.00489 * 22 20 18 26 26 H 1.08993 * 109.47260 * 60.00163 * 1 2 3 27 27 H 1.09006 * 109.46813 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47187 * 299.99710 * 1 2 3 29 29 H 1.08998 * 109.47187 * 240.00290 * 2 1 3 30 30 H 1.08996 * 109.47511 * 119.99386 * 2 1 3 31 31 H 1.08998 * 109.47021 * 60.00188 * 3 2 1 32 32 H 1.09009 * 109.46848 * 299.99853 * 3 2 1 33 33 H 1.09000 * 110.48770 * 261.57768 * 6 4 3 34 34 H 1.08996 * 110.48365 * 24.21826 * 6 4 3 35 35 H 1.09001 * 110.75680 * 80.37214 * 7 6 4 36 36 H 1.09002 * 110.75743 * 203.74894 * 7 6 4 37 37 H 1.08997 * 110.49014 * 279.26542 * 8 7 6 38 38 H 1.09005 * 110.48728 * 156.61854 * 8 7 6 39 39 H 0.97005 * 119.99680 * 359.97438 * 13 11 9 40 40 H 1.09001 * 109.46813 * 60.00258 * 14 13 11 41 41 H 1.08992 * 109.47397 * 300.00319 * 14 13 11 42 42 H 1.09002 * 109.47398 * 300.00326 * 15 14 13 43 43 H 1.09001 * 109.47194 * 60.00507 * 15 14 13 44 44 H 1.09002 * 109.47153 * 300.00319 * 16 15 14 45 45 H 1.08998 * 109.47533 * 59.99948 * 16 15 14 46 46 H 0.97004 * 119.99396 * 0.02562 * 17 16 15 47 47 H 0.97001 * 119.99359 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4427 -0.0006 5 1 3.9441 0.8347 0.8232 6 6 4.0979 0.8960 -1.3430 7 6 5.3530 1.7551 -1.6358 8 6 4.9269 3.1610 -1.1450 9 6 4.0970 2.8828 0.1254 10 1 3.2628 3.5816 0.1878 11 6 4.9679 3.0086 1.3488 12 8 5.1564 2.0450 2.0607 13 7 5.5373 4.1920 1.6519 14 6 6.3835 4.3144 2.8415 15 6 6.9013 5.7498 2.9534 16 6 7.7856 5.8776 4.1954 17 7 8.2809 7.2521 4.3031 18 6 9.0972 7.6062 5.3440 19 1 9.3761 6.8721 6.0853 20 6 9.5669 8.9085 5.4456 21 7 9.2273 9.8030 4.5418 22 14 10.6798 9.3917 6.8659 23 1 11.9142 8.5669 6.8302 24 1 11.0407 10.8272 6.7457 25 1 9.9700 9.1651 8.1504 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5137 0.8900 31 1 1.6766 1.9563 0.8900 32 1 1.6765 1.9564 -0.8901 33 1 4.3692 -0.1553 -1.2466 34 1 3.3534 1.0283 -2.1281 35 1 6.2105 1.3917 -1.0695 36 1 5.5714 1.7686 -2.7036 37 1 4.3163 3.6592 -1.8980 38 1 5.8032 3.7628 -0.9039 39 1 5.3869 4.9626 1.0822 40 1 7.2275 3.6295 2.7590 41 1 5.8008 4.0677 3.7288 42 1 7.4842 5.9961 2.0659 43 1 6.0576 6.4350 3.0357 44 1 7.2030 5.6311 5.0831 45 1 8.6292 5.1924 4.1129 46 1 8.0300 7.9115 3.6373 47 1 9.5553 10.7131 4.6130 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001161419367.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:04 Heat of formation + Delta-G solvation = -90.273804 kcal Electronic energy + Delta-G solvation = -21886.654524 eV Core-core repulsion = 18680.905843 eV Total energy + Delta-G solvation = -3205.748681 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.35573 -38.80055 -37.44282 -35.92095 -35.29804 -33.76346 -31.58596 -30.61451 -29.88480 -26.94614 -26.04737 -24.51314 -22.72851 -22.59594 -22.32401 -21.09190 -20.20413 -19.16778 -18.01124 -17.22274 -16.93506 -16.60090 -16.29887 -16.10533 -15.62883 -15.30114 -15.19078 -14.97143 -14.61573 -14.28374 -13.95017 -13.83124 -13.41225 -13.29905 -13.08732 -12.79751 -12.63177 -12.45806 -12.28485 -12.20386 -12.11090 -12.05935 -11.96782 -11.81764 -11.75560 -11.70969 -11.45766 -11.31987 -11.22479 -10.95091 -10.70646 -10.10632 -9.03529 -7.97587 -5.27023 1.46990 1.50194 1.56394 1.64744 2.17865 2.55716 3.35855 3.51784 3.66369 3.72831 3.75103 4.06032 4.11075 4.16561 4.20788 4.27113 4.35244 4.44970 4.48703 4.61920 4.66706 4.70261 4.71730 4.73311 4.78885 4.80794 4.86665 4.96808 5.01073 5.03573 5.11888 5.19349 5.25529 5.26066 5.29341 5.29754 5.37186 5.42775 5.46347 5.47279 5.49560 5.64937 6.24958 6.56827 7.26022 7.31366 8.05671 8.30031 9.25596 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.036645 B = 0.002301 C = 0.002246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 763.899847 B =12164.578479 C =12464.750127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.125 4.125 3 C -0.106 4.106 4 C -0.088 4.088 5 H 0.064 0.936 6 C -0.112 4.112 7 C -0.129 4.129 8 C -0.111 4.111 9 C -0.107 4.107 10 H 0.119 0.881 11 C 0.512 3.488 12 O -0.585 6.585 13 N -0.718 5.718 14 C 0.133 3.867 15 C -0.117 4.117 16 C 0.152 3.848 17 N -0.746 5.746 18 C -0.252 4.252 19 H 0.074 0.926 20 C -0.075 4.075 21 N -0.968 5.968 22 Si 0.976 3.024 23 H -0.278 1.278 24 H -0.293 1.293 25 H -0.278 1.278 26 H 0.062 0.938 27 H 0.056 0.944 28 H 0.049 0.951 29 H 0.069 0.931 30 H 0.046 0.954 31 H 0.052 0.948 32 H 0.079 0.921 33 H 0.060 0.940 34 H 0.086 0.914 35 H 0.045 0.955 36 H 0.085 0.915 37 H 0.102 0.898 38 H 0.067 0.933 39 H 0.415 0.585 40 H 0.058 0.942 41 H 0.059 0.941 42 H 0.074 0.926 43 H 0.074 0.926 44 H 0.021 0.979 45 H 0.021 0.979 46 H 0.376 0.624 47 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.584 -17.362 -16.699 29.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.162 4.162 3 C -0.143 4.143 4 C -0.107 4.107 5 H 0.083 0.917 6 C -0.149 4.149 7 C -0.167 4.167 8 C -0.149 4.149 9 C -0.128 4.128 10 H 0.137 0.863 11 C 0.300 3.700 12 O -0.465 6.465 13 N -0.370 5.370 14 C 0.008 3.992 15 C -0.155 4.155 16 C 0.025 3.975 17 N -0.390 5.390 18 C -0.384 4.384 19 H 0.092 0.908 20 C -0.268 4.268 21 N -0.618 5.618 22 Si 0.805 3.195 23 H -0.204 1.204 24 H -0.219 1.219 25 H -0.204 1.204 26 H 0.081 0.919 27 H 0.075 0.925 28 H 0.068 0.932 29 H 0.087 0.913 30 H 0.065 0.935 31 H 0.071 0.929 32 H 0.098 0.902 33 H 0.079 0.921 34 H 0.104 0.896 35 H 0.064 0.936 36 H 0.103 0.897 37 H 0.121 0.879 38 H 0.086 0.914 39 H 0.251 0.749 40 H 0.077 0.923 41 H 0.077 0.923 42 H 0.093 0.907 43 H 0.093 0.907 44 H 0.039 0.961 45 H 0.039 0.961 46 H 0.208 0.792 47 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -16.351 -18.070 -16.021 29.164 hybrid contribution 0.735 0.995 0.739 1.441 sum -15.616 -17.075 -15.282 27.730 Atomic orbital electron populations 1.21770 0.95298 1.01849 1.01957 1.21529 0.96218 0.96726 1.01776 1.21687 0.93258 0.97210 1.02177 1.21802 0.95972 0.93885 0.99003 0.91744 1.22416 0.97281 0.98992 0.96205 1.22529 0.97471 0.95084 1.01571 1.22425 0.99438 0.97859 0.95183 1.22081 0.98217 1.00268 0.92200 0.86277 1.21239 0.79815 0.81904 0.87002 1.90646 1.63171 1.39179 1.53545 1.45957 1.50138 1.12776 1.28136 1.21057 0.93853 0.96319 0.87925 1.21690 0.99749 0.95521 0.98547 1.20675 0.94986 0.86016 0.95832 1.42529 1.58516 1.07680 1.30226 1.19609 1.21142 0.94682 1.02946 0.90791 1.25609 1.03183 0.96294 1.01690 1.69801 1.50778 1.03378 1.37844 0.85176 0.78798 0.76593 0.78976 1.20391 1.21864 1.20378 0.91918 0.92526 0.93218 0.91258 0.93497 0.92937 0.90199 0.92134 0.89592 0.93628 0.89650 0.87917 0.91386 0.74852 0.92346 0.92292 0.90713 0.90715 0.96137 0.96130 0.79193 0.93849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.73 9.91 71.98 0.71 -1.02 16 2 C -0.12 -1.69 5.79 30.60 0.18 -1.51 16 3 C -0.11 -1.46 4.34 30.60 0.13 -1.33 16 4 C -0.09 -1.51 2.53 -10.07 -0.03 -1.53 16 5 H 0.06 1.59 6.39 -2.38 -0.02 1.57 16 6 C -0.11 -1.52 5.53 31.67 0.18 -1.35 16 7 C -0.13 -1.83 6.91 31.88 0.22 -1.61 16 8 C -0.11 -1.42 6.35 31.67 0.20 -1.22 16 9 C -0.11 -1.74 2.95 -10.81 -0.03 -1.78 16 10 H 0.12 1.48 7.67 -2.39 -0.02 1.46 16 11 C 0.51 12.58 7.07 87.66 0.62 13.20 16 12 O -0.59 -19.65 15.21 -3.01 -0.05 -19.70 16 13 N -0.72 -15.93 5.26 -463.07 -2.43 -18.36 16 14 C 0.13 3.62 5.67 86.38 0.49 4.11 16 15 C -0.12 -3.50 5.44 30.59 0.17 -3.33 16 16 C 0.15 6.08 6.26 86.38 0.54 6.62 16 17 N -0.75 -38.31 5.60 -343.46 -1.92 -40.23 16 18 C -0.25 -14.32 9.99 84.03 0.84 -13.48 16 19 H 0.07 4.05 7.83 -2.91 -0.02 4.03 16 20 C -0.08 -4.36 5.50 84.86 0.47 -3.90 16 21 N -0.97 -59.11 13.06 21.65 0.28 -58.83 16 22 Si 0.98 46.33 29.55 68.60 2.03 48.36 16 23 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 24 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 25 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 26 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 27 H 0.06 0.60 8.14 -2.38 -0.02 0.58 16 28 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 29 H 0.07 0.83 7.51 -2.39 -0.02 0.81 16 30 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.08 0.83 8.00 -2.38 -0.02 0.81 16 33 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 34 H 0.09 0.86 7.76 -2.39 -0.02 0.84 16 35 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 36 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 37 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 38 H 0.07 0.93 7.50 -2.38 -0.02 0.91 16 39 H 0.41 6.81 8.37 -92.70 -0.78 6.03 16 40 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 41 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 42 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 43 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 44 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 45 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 46 H 0.38 20.10 7.67 -92.71 -0.71 19.39 16 47 H 0.25 14.93 8.31 -92.71 -0.77 14.16 16 Total: -1.00 -70.06 373.38 2.03 -68.03 By element: Atomic # 1 Polarization: 29.40 SS G_CDS: -0.56 Total: 28.84 kcal Atomic # 6 Polarization: -12.80 SS G_CDS: 4.69 Total: -8.11 kcal Atomic # 7 Polarization: -113.34 SS G_CDS: -4.08 Total: -117.42 kcal Atomic # 8 Polarization: -19.65 SS G_CDS: -0.05 Total: -19.70 kcal Atomic # 14 Polarization: 46.33 SS G_CDS: 2.03 Total: 48.36 kcal Total: -70.06 2.03 -68.03 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161419367.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.247 kcal (2) G-P(sol) polarization free energy of solvation -70.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds