Wall clock time and date at job start Tue Mar 31 2020 06:16:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47109 * 2 1 4 4 C 1.53004 * 109.47109 * 179.97438 * 3 2 1 5 5 H 1.09001 * 109.47037 * 304.99852 * 4 3 2 6 6 C 1.53000 * 109.47042 * 64.99850 * 4 3 2 7 7 C 1.50696 * 109.47385 * 185.00117 * 4 3 2 8 8 O 1.21286 * 119.99748 * 359.97438 * 7 4 3 9 9 N 1.34774 * 120.00346 * 180.02562 * 7 4 3 10 10 C 1.46499 * 120.00254 * 179.97438 * 9 7 4 11 11 C 1.52997 * 109.47027 * 179.97438 * 10 9 7 12 12 C 1.53003 * 109.46993 * 175.45978 * 11 10 9 13 13 C 1.53004 * 115.54845 * 279.32398 * 12 11 10 14 14 N 1.46496 * 109.47172 * 294.95098 * 13 12 11 15 15 C 1.36938 * 119.99966 * 174.36937 * 14 13 12 16 16 H 1.08003 * 119.99635 * 0.02562 * 15 14 13 17 17 C 1.38809 * 120.00055 * 180.02562 * 15 14 13 18 18 N 1.31621 * 119.99727 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 120.00165 * 180.02562 * 17 15 14 20 20 H 1.48495 * 109.47331 * 89.99659 * 19 17 15 21 21 H 1.48496 * 109.47146 * 210.00251 * 19 17 15 22 22 H 1.48504 * 109.46723 * 329.99708 * 19 17 15 23 23 C 1.53001 * 117.50141 * 133.61887 * 12 11 10 24 24 C 1.52996 * 117.49892 * 64.99493 * 12 11 10 25 25 H 1.08995 * 109.46932 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.46538 * 299.99945 * 1 2 3 27 27 H 1.08992 * 109.46742 * 59.99993 * 1 2 3 28 28 H 1.09002 * 109.47085 * 120.00391 * 2 1 3 29 29 H 1.08997 * 109.47218 * 239.99949 * 2 1 3 30 30 H 1.09002 * 109.47289 * 299.99633 * 3 2 1 31 31 H 1.09003 * 109.47375 * 60.00568 * 3 2 1 32 32 H 1.09003 * 109.47260 * 180.02562 * 6 4 3 33 33 H 1.09002 * 109.47446 * 299.99948 * 6 4 3 34 34 H 1.09001 * 109.47202 * 60.00104 * 6 4 3 35 35 H 0.97004 * 119.99900 * 359.97438 * 9 7 4 36 36 H 1.08991 * 109.47232 * 299.99879 * 10 9 7 37 37 H 1.09003 * 109.46852 * 59.99945 * 10 9 7 38 38 H 1.09005 * 109.47297 * 295.45789 * 11 10 9 39 39 H 1.08993 * 109.47356 * 55.45819 * 11 10 9 40 40 H 1.09006 * 109.46831 * 54.95270 * 13 12 11 41 41 H 1.09003 * 109.47027 * 174.95109 * 13 12 11 42 42 H 0.97005 * 120.00002 * 354.37289 * 14 13 12 43 43 H 0.97003 * 119.99776 * 179.97438 * 18 17 15 44 44 H 1.09004 * 117.49777 * 359.97438 * 23 12 11 45 45 H 1.08999 * 117.50334 * 145.02154 * 23 12 11 46 46 H 1.09006 * 117.49835 * 214.97715 * 24 12 11 47 47 H 1.08997 * 117.50364 * 0.02562 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4425 0.0006 5 1 3.9330 0.8532 0.8427 6 6 4.0806 0.8326 -1.3064 7 6 4.0724 2.8578 0.1245 8 8 3.2842 3.7763 0.2039 9 7 5.3974 3.1032 0.1460 10 6 5.8858 4.4792 0.2658 11 6 7.4157 4.4792 0.2666 12 6 7.9258 5.9216 0.2776 13 6 7.9356 6.6284 -1.0794 14 7 8.8903 5.9635 -1.9695 15 6 8.9883 6.3495 -3.2797 16 1 8.3619 7.1445 -3.6566 17 6 9.8926 5.7190 -4.1232 18 7 10.6555 4.7498 -3.6639 19 14 10.0268 6.2461 -5.9103 20 1 11.0419 7.3228 -6.0340 21 1 10.4342 5.0839 -6.7399 22 1 8.7106 6.7506 -6.3777 23 6 9.0435 6.2683 1.2632 24 6 7.6198 6.7697 1.5137 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3632 0.5139 0.8900 27 1 -0.3632 0.5138 -0.8899 28 1 1.8934 -0.5139 0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 1.6768 1.9563 -0.8900 31 1 1.6768 1.9563 0.8900 32 1 5.1706 0.8322 -1.3058 33 1 3.7173 -0.1912 -1.3960 34 1 3.7176 1.4219 -2.1485 35 1 6.0278 2.3687 0.0821 36 1 5.5226 5.0683 -0.5762 37 1 5.5223 4.9139 1.1970 38 1 7.7786 3.9587 1.1529 39 1 7.7795 3.9720 -0.6269 40 1 6.9388 6.5857 -1.5185 41 1 8.2289 7.6696 -0.9446 42 1 9.4531 5.2496 -1.6308 43 1 11.2872 4.3090 -4.2534 44 1 9.4152 5.4688 1.9042 45 1 9.7861 7.0000 0.9451 46 1 7.4259 7.8313 1.3603 47 1 7.0556 6.3000 2.3193 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163840115.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:42 Heat of formation + Delta-G solvation = -36.228242 kcal Electronic energy + Delta-G solvation = -22258.861993 eV Core-core repulsion = 19055.456904 eV Total energy + Delta-G solvation = -3203.405090 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.94528 -38.29615 -36.17041 -34.76981 -33.90559 -32.29746 -30.76493 -29.72334 -26.80095 -25.99192 -24.55209 -22.95154 -22.71182 -21.75843 -21.10178 -19.94975 -18.46197 -17.10913 -16.84886 -16.04702 -15.80977 -15.37690 -14.96472 -14.50616 -14.41560 -14.14020 -13.86102 -13.58170 -13.16476 -13.05598 -12.73880 -12.58767 -12.42784 -12.21872 -12.08229 -11.86779 -11.48092 -11.38580 -11.16676 -11.11206 -11.00595 -10.94211 -10.83748 -10.71949 -10.56530 -10.14358 -9.90007 -9.71861 -9.57949 -9.30463 -8.94412 -8.83614 -6.89318 -5.75569 -3.03236 2.71133 3.23697 3.44183 3.49593 3.51018 4.07496 4.54083 4.56335 4.62294 4.70844 4.96249 5.01557 5.04471 5.08987 5.11825 5.17240 5.30901 5.35718 5.46546 5.55449 5.57301 5.60814 5.64714 5.68080 5.69944 5.76560 5.80399 5.91497 5.92547 5.94183 6.13025 6.18400 6.19958 6.22867 6.23799 6.44851 6.47415 6.50650 6.60392 6.77807 6.86061 7.57496 7.71514 8.29779 8.43731 9.55329 10.13741 10.49660 11.47327 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.014578 B = 0.003509 C = 0.002997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1920.215352 B = 7976.571394 C = 9339.156864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.126 4.126 3 C -0.101 4.101 4 C -0.111 4.111 5 H 0.094 0.906 6 C -0.147 4.147 7 C 0.514 3.486 8 O -0.544 6.544 9 N -0.727 5.727 10 C 0.124 3.876 11 C -0.091 4.091 12 C -0.119 4.119 13 C 0.188 3.812 14 N -0.727 5.727 15 C -0.236 4.236 16 H 0.069 0.931 17 C -0.014 4.014 18 N -0.934 5.934 19 Si 0.906 3.094 20 H -0.290 1.290 21 H -0.292 1.292 22 H -0.282 1.282 23 C -0.165 4.165 24 C -0.178 4.178 25 H 0.052 0.948 26 H 0.053 0.947 27 H 0.054 0.946 28 H 0.060 0.940 29 H 0.065 0.935 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.062 0.938 33 H 0.068 0.932 34 H 0.062 0.938 35 H 0.400 0.600 36 H 0.071 0.929 37 H 0.063 0.937 38 H 0.061 0.939 39 H 0.087 0.913 40 H 0.026 0.974 41 H 0.017 0.983 42 H 0.385 0.615 43 H 0.254 0.746 44 H 0.088 0.912 45 H 0.095 0.905 46 H 0.092 0.908 47 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.468 -9.261 11.560 20.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.164 4.164 3 C -0.139 4.139 4 C -0.132 4.132 5 H 0.113 0.887 6 C -0.205 4.205 7 C 0.300 3.700 8 O -0.421 6.421 9 N -0.378 5.378 10 C 0.001 3.999 11 C -0.128 4.128 12 C -0.120 4.120 13 C 0.060 3.940 14 N -0.371 5.371 15 C -0.368 4.368 16 H 0.087 0.913 17 C -0.210 4.210 18 N -0.583 5.583 19 Si 0.737 3.263 20 H -0.218 1.218 21 H -0.218 1.218 22 H -0.208 1.208 23 C -0.202 4.202 24 C -0.215 4.215 25 H 0.071 0.929 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.079 0.921 29 H 0.083 0.917 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.081 0.919 33 H 0.087 0.913 34 H 0.081 0.919 35 H 0.234 0.766 36 H 0.089 0.911 37 H 0.081 0.919 38 H 0.080 0.920 39 H 0.105 0.895 40 H 0.044 0.956 41 H 0.034 0.966 42 H 0.218 0.782 43 H 0.064 0.936 44 H 0.107 0.893 45 H 0.114 0.886 46 H 0.110 0.890 47 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -14.068 -8.494 11.450 20.029 hybrid contribution 0.782 -0.267 -0.928 1.243 sum -13.286 -8.760 10.521 19.078 Atomic orbital electron populations 1.21762 0.95832 1.01401 1.01996 1.21604 0.95972 0.96737 1.02039 1.21431 0.92344 0.96532 1.03554 1.21341 0.97817 0.93540 1.00528 0.88742 1.21846 1.01437 1.01268 0.95915 1.20658 0.82236 0.91309 0.75806 1.90690 1.55365 1.46518 1.49558 1.46083 1.07063 1.09951 1.74722 1.21346 0.94207 0.82255 1.02071 1.21249 0.93255 0.95285 1.03038 1.21567 1.03000 0.94970 0.92437 1.20182 0.93630 0.93681 0.86500 1.42290 1.44323 1.43033 1.07481 1.19239 1.16740 1.14472 0.86323 0.91290 1.24711 0.99248 0.98842 0.98209 1.69662 1.26932 1.26654 1.35041 0.86206 0.77642 0.77390 0.85081 1.21779 1.21806 1.20784 1.22965 0.91667 1.03377 1.02187 1.22971 0.99290 0.99894 0.99374 0.92879 0.92750 0.92655 0.92111 0.91677 0.91236 0.91212 0.91924 0.91284 0.91876 0.76610 0.91068 0.91911 0.92037 0.89479 0.95574 0.96576 0.78168 0.93607 0.89346 0.88607 0.88955 0.89288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 9.91 37.16 0.37 -0.73 16 2 C -0.13 -0.95 5.69 -26.73 -0.15 -1.10 16 3 C -0.10 -0.99 4.03 -26.73 -0.11 -1.10 16 4 C -0.11 -1.08 2.72 -91.77 -0.25 -1.33 16 5 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 6 C -0.15 -1.31 8.84 37.16 0.33 -0.98 16 7 C 0.51 6.95 7.15 -10.99 -0.08 6.87 16 8 O -0.54 -9.51 15.92 5.55 0.09 -9.42 16 9 N -0.73 -9.15 5.45 -60.30 -0.33 -9.48 16 10 C 0.12 1.79 5.51 -4.04 -0.02 1.76 16 11 C -0.09 -1.32 5.24 -26.73 -0.14 -1.46 16 12 C -0.12 -1.91 1.52 -154.51 -0.23 -2.15 16 13 C 0.19 3.83 6.10 -4.04 -0.02 3.80 16 14 N -0.73 -18.24 5.30 -59.91 -0.32 -18.56 16 15 C -0.24 -6.63 9.99 -15.06 -0.15 -6.79 16 16 H 0.07 1.90 7.83 -52.48 -0.41 1.49 16 17 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 18 N -0.93 -28.01 13.06 55.49 0.72 -27.28 16 19 Si 0.91 22.51 29.55 -169.99 -5.02 17.49 16 20 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 21 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 22 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 23 C -0.16 -2.44 9.90 -26.73 -0.26 -2.70 16 24 C -0.18 -2.41 9.57 -26.73 -0.26 -2.66 16 25 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 26 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 29 H 0.06 0.46 6.57 -51.93 -0.34 0.12 16 30 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.07 0.76 7.96 -51.93 -0.41 0.35 16 32 H 0.06 0.53 7.56 -51.93 -0.39 0.14 16 33 H 0.07 0.49 6.57 -51.93 -0.34 0.15 16 34 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.40 4.09 7.89 -40.82 -0.32 3.77 16 36 H 0.07 1.20 7.69 -51.93 -0.40 0.80 16 37 H 0.06 0.89 7.80 -51.93 -0.41 0.49 16 38 H 0.06 0.78 7.94 -51.93 -0.41 0.37 16 39 H 0.09 1.48 7.64 -51.93 -0.40 1.08 16 40 H 0.03 0.55 7.69 -51.93 -0.40 0.15 16 41 H 0.02 0.34 8.09 -51.93 -0.42 -0.08 16 42 H 0.38 10.08 7.46 -40.82 -0.30 9.78 16 43 H 0.25 7.38 8.31 -40.82 -0.34 7.04 16 44 H 0.09 1.18 8.08 -51.93 -0.42 0.76 16 45 H 0.10 1.52 8.14 -51.93 -0.42 1.10 16 46 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 47 H 0.09 1.07 7.98 -51.93 -0.41 0.66 16 LS Contribution 378.60 15.07 5.71 5.71 Total: -1.00 -32.07 378.60 -8.96 -41.04 By element: Atomic # 1 Polarization: 18.32 SS G_CDS: -8.73 Total: 9.59 kcal Atomic # 6 Polarization: -8.00 SS G_CDS: -1.08 Total: -9.08 kcal Atomic # 7 Polarization: -55.40 SS G_CDS: 0.08 Total: -55.32 kcal Atomic # 8 Polarization: -9.51 SS G_CDS: 0.09 Total: -9.42 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -5.02 Total: 17.49 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -32.07 -8.96 -41.04 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163840115.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.807 kcal (2) G-P(sol) polarization free energy of solvation -32.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.036 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds