Wall clock time and date at job start Tue Mar 31 2020 06:16:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53008 * 109.47257 * 2 1 4 4 C 1.53000 * 109.47257 * 180.02562 * 3 2 1 5 5 H 1.08999 * 109.46704 * 54.99689 * 4 3 2 6 6 C 1.52999 * 109.46786 * 294.99913 * 4 3 2 7 7 C 1.50696 * 109.46952 * 175.00240 * 4 3 2 8 8 O 1.21281 * 120.00197 * 359.97438 * 7 4 3 9 9 N 1.34779 * 120.00087 * 180.02562 * 7 4 3 10 10 C 1.46497 * 120.00118 * 174.84973 * 9 7 4 11 11 C 1.53007 * 109.46807 * 184.87736 * 10 9 7 12 12 C 1.53005 * 109.46572 * 178.77823 * 11 10 9 13 13 C 1.52997 * 115.55531 * 40.11972 * 12 11 10 14 14 N 1.46494 * 109.47123 * 65.17633 * 13 12 11 15 15 C 1.36940 * 120.00235 * 185.11606 * 14 13 12 16 16 H 1.08001 * 119.99442 * 4.92186 * 15 14 13 17 17 C 1.38807 * 120.00267 * 184.91617 * 15 14 13 18 18 N 1.31617 * 119.99976 * 183.49413 * 17 15 14 19 19 Si 1.86803 * 119.99984 * 3.48850 * 17 15 14 20 20 H 1.48499 * 109.46807 * 91.17919 * 19 17 15 21 21 H 1.48497 * 109.46831 * 211.17746 * 19 17 15 22 22 H 1.48497 * 109.47086 * 331.17584 * 19 17 15 23 23 C 1.53006 * 117.49246 * 254.40603 * 12 11 10 24 24 C 1.52998 * 117.49278 * 185.78996 * 12 11 10 25 25 H 1.08996 * 109.46949 * 299.99914 * 1 2 3 26 26 H 1.09001 * 109.46746 * 60.00284 * 1 2 3 27 27 H 1.08997 * 109.47156 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47254 * 119.99819 * 2 1 3 29 29 H 1.09001 * 109.47389 * 240.00105 * 2 1 3 30 30 H 1.09003 * 109.46841 * 300.00072 * 3 2 1 31 31 H 1.09001 * 109.46835 * 59.99766 * 3 2 1 32 32 H 1.09004 * 109.47121 * 299.99822 * 6 4 3 33 33 H 1.09003 * 109.47403 * 60.00202 * 6 4 3 34 34 H 1.09006 * 109.46912 * 179.97438 * 6 4 3 35 35 H 0.97003 * 119.99640 * 354.84652 * 9 7 4 36 36 H 1.09000 * 109.46979 * 304.87341 * 10 9 7 37 37 H 1.08998 * 109.47052 * 64.87767 * 10 9 7 38 38 H 1.08998 * 109.46577 * 298.76955 * 11 10 9 39 39 H 1.08991 * 109.47515 * 58.77678 * 11 10 9 40 40 H 1.08999 * 109.47203 * 185.18144 * 13 12 11 41 41 H 1.09006 * 109.46803 * 305.18415 * 13 12 11 42 42 H 0.97003 * 120.00599 * 5.12485 * 14 13 12 43 43 H 0.96998 * 120.00603 * 180.02562 * 18 17 15 44 44 H 1.08993 * 117.50205 * 0.02562 * 23 12 11 45 45 H 1.08997 * 117.49111 * 145.02553 * 23 12 11 46 46 H 1.09007 * 117.49740 * 214.97603 * 24 12 11 47 47 H 1.09002 * 117.50247 * 359.97438 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 6 3.5701 1.4426 -0.0006 5 1 3.9330 0.8532 -0.8427 6 6 4.0805 0.8327 1.3064 7 6 4.0723 2.8580 -0.1244 8 8 3.2841 3.7763 -0.2047 9 7 5.3974 3.1033 -0.1469 10 6 5.8864 4.4644 -0.3803 11 6 7.4133 4.4479 -0.4778 12 6 7.9221 5.8646 -0.7518 13 6 7.2059 6.9819 0.0096 14 7 7.4558 6.8323 1.4453 15 6 6.8290 7.6590 2.3392 16 1 6.0909 8.3676 1.9934 17 6 7.1420 7.5860 3.6895 18 7 6.4910 8.3314 4.5572 19 14 8.4871 6.4296 4.2753 20 1 9.7857 7.1497 4.2932 21 1 8.1672 5.9516 5.6443 22 1 8.5775 5.2685 3.3541 23 6 8.4157 6.1766 -2.1660 24 6 9.4185 6.0384 -1.0188 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8934 -0.5138 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.6767 1.9564 -0.8900 31 1 1.6767 1.9564 0.8900 32 1 3.7175 1.4221 2.1485 33 1 3.7172 -0.1910 1.3960 34 1 5.1706 0.8323 1.3058 35 1 6.0272 2.3787 -0.0086 36 1 5.4671 4.8466 -1.3109 37 1 5.5820 5.1065 0.4462 38 1 7.8333 4.0862 0.4608 39 1 7.7184 3.7887 -1.2904 40 1 7.5813 7.9486 -0.3259 41 1 6.1342 6.9221 -0.1808 42 1 8.0654 6.1479 1.7629 43 1 6.7100 8.2808 5.5008 44 1 8.3776 5.3729 -2.9012 45 1 8.2301 7.1781 -2.5542 46 1 9.8927 6.9489 -0.6523 47 1 10.0406 5.1435 -0.9988 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163840116.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:46 Heat of formation + Delta-G solvation = -29.582101 kcal Electronic energy + Delta-G solvation = -22590.802726 eV Core-core repulsion = 19387.685834 eV Total energy + Delta-G solvation = -3203.116891 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.89518 -38.43496 -36.13691 -34.74013 -34.04170 -32.29714 -31.10520 -29.84826 -26.78804 -26.24482 -24.59289 -22.87404 -22.41784 -21.80840 -21.10114 -19.90766 -18.74133 -17.45784 -16.82819 -16.07142 -15.78183 -15.23094 -15.05447 -14.56533 -14.42390 -14.19010 -13.84859 -13.59968 -13.31306 -13.05375 -12.62903 -12.60073 -12.42366 -12.36520 -12.06288 -11.88010 -11.58600 -11.46580 -11.36320 -11.12219 -11.10600 -10.99107 -10.89038 -10.70904 -10.68147 -10.16470 -9.87590 -9.61624 -9.53131 -9.44379 -8.85773 -8.83322 -7.17313 -5.72798 -3.07717 2.78774 3.27240 3.36675 3.41345 3.46092 3.94579 4.56133 4.58566 4.61717 4.73611 4.87969 4.94167 4.98530 5.04625 5.07565 5.11319 5.24385 5.30263 5.45442 5.48516 5.56175 5.60607 5.64259 5.67771 5.70418 5.72908 5.78973 5.79546 5.89682 5.92110 5.97899 6.08509 6.15283 6.23809 6.24794 6.29697 6.34067 6.43763 6.57930 6.70892 6.76514 7.61957 8.05440 8.37579 8.46638 9.26573 9.98366 10.19545 11.45833 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.013979 B = 0.004153 C = 0.003546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2002.555028 B = 6740.806458 C = 7894.203375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.125 4.125 3 C -0.102 4.102 4 C -0.110 4.110 5 H 0.094 0.906 6 C -0.147 4.147 7 C 0.512 3.488 8 O -0.535 6.535 9 N -0.730 5.730 10 C 0.117 3.883 11 C -0.085 4.085 12 C -0.127 4.127 13 C 0.189 3.811 14 N -0.751 5.751 15 C -0.241 4.241 16 H 0.089 0.911 17 C 0.004 3.996 18 N -0.934 5.934 19 Si 0.886 3.114 20 H -0.285 1.285 21 H -0.292 1.292 22 H -0.279 1.279 23 C -0.172 4.172 24 C -0.171 4.171 25 H 0.055 0.945 26 H 0.054 0.946 27 H 0.052 0.948 28 H 0.064 0.936 29 H 0.059 0.941 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.063 0.937 33 H 0.068 0.932 34 H 0.058 0.942 35 H 0.395 0.605 36 H 0.065 0.935 37 H 0.089 0.911 38 H 0.070 0.930 39 H 0.062 0.938 40 H 0.024 0.976 41 H 0.038 0.962 42 H 0.362 0.638 43 H 0.259 0.741 44 H 0.090 0.910 45 H 0.094 0.906 46 H 0.097 0.903 47 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.929 -18.619 -13.135 22.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.163 4.163 3 C -0.140 4.140 4 C -0.131 4.131 5 H 0.112 0.888 6 C -0.205 4.205 7 C 0.298 3.702 8 O -0.411 6.411 9 N -0.382 5.382 10 C -0.006 4.006 11 C -0.122 4.122 12 C -0.128 4.128 13 C 0.062 3.938 14 N -0.396 5.396 15 C -0.371 4.371 16 H 0.107 0.893 17 C -0.191 4.191 18 N -0.582 5.582 19 Si 0.717 3.283 20 H -0.212 1.212 21 H -0.219 1.219 22 H -0.206 1.206 23 C -0.209 4.209 24 C -0.208 4.208 25 H 0.074 0.926 26 H 0.073 0.927 27 H 0.071 0.929 28 H 0.082 0.918 29 H 0.078 0.922 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.083 0.917 33 H 0.087 0.913 34 H 0.077 0.923 35 H 0.229 0.771 36 H 0.084 0.916 37 H 0.107 0.893 38 H 0.089 0.911 39 H 0.080 0.920 40 H 0.042 0.958 41 H 0.056 0.944 42 H 0.195 0.805 43 H 0.069 0.931 44 H 0.108 0.892 45 H 0.112 0.888 46 H 0.115 0.885 47 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -2.655 -17.738 -13.115 22.219 hybrid contribution 1.397 -1.104 0.640 1.892 sum -1.258 -18.842 -12.475 22.633 Atomic orbital electron populations 1.21763 0.95803 1.01357 1.02101 1.21598 0.96016 0.96745 1.01893 1.21444 0.92303 0.96501 1.03752 1.21336 0.97905 0.93589 1.00304 0.88822 1.21847 1.01058 1.01318 0.96229 1.20631 0.82261 0.91232 0.76095 1.90725 1.55242 1.46338 1.48829 1.46050 1.07045 1.11317 1.73746 1.21502 0.93409 0.82901 1.02790 1.21181 0.94538 0.94814 1.01710 1.21658 0.96601 0.96232 0.98293 1.20218 0.96850 0.92751 0.83983 1.42668 1.55146 1.40806 1.01021 1.19068 1.16774 1.13498 0.87719 0.89294 1.24673 0.99440 0.99215 0.95807 1.69706 1.43594 1.43165 1.01749 0.86519 0.82967 0.81042 0.77746 1.21210 1.21895 1.20584 1.23022 1.04290 1.02650 0.90950 1.22963 0.91950 1.03190 1.02668 0.92586 0.92708 0.92924 0.91764 0.92191 0.91127 0.91095 0.91740 0.91322 0.92272 0.77100 0.91648 0.89299 0.91094 0.91980 0.95772 0.94407 0.80489 0.93134 0.89186 0.88754 0.88457 0.89338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 9.91 37.16 0.37 -0.82 16 2 C -0.13 -0.99 5.69 -26.73 -0.15 -1.15 16 3 C -0.10 -1.07 4.03 -26.73 -0.11 -1.18 16 4 C -0.11 -1.12 2.73 -91.77 -0.25 -1.37 16 5 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 6 C -0.15 -1.30 8.84 37.16 0.33 -0.97 16 7 C 0.51 7.38 7.15 -10.99 -0.08 7.30 16 8 O -0.54 -10.22 15.93 5.56 0.09 -10.13 16 9 N -0.73 -9.49 5.47 -60.29 -0.33 -9.82 16 10 C 0.12 1.79 4.80 -4.04 -0.02 1.77 16 11 C -0.08 -1.14 5.37 -26.73 -0.14 -1.29 16 12 C -0.13 -1.91 1.83 -154.51 -0.28 -2.19 16 13 C 0.19 3.69 5.31 -4.05 -0.02 3.67 16 14 N -0.75 -17.82 5.29 -59.91 -0.32 -18.14 16 15 C -0.24 -6.92 10.47 -15.06 -0.16 -7.08 16 16 H 0.09 2.76 8.06 -52.49 -0.42 2.34 16 17 C 0.00 0.13 5.50 -17.43 -0.10 0.03 16 18 N -0.93 -29.88 13.97 55.49 0.78 -29.10 16 19 Si 0.89 22.39 27.90 -169.99 -4.74 17.65 16 20 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 21 H -0.29 -7.49 7.11 56.52 0.40 -7.09 16 22 H -0.28 -6.54 6.30 56.52 0.36 -6.18 16 23 C -0.17 -2.12 9.87 -26.73 -0.26 -2.39 16 24 C -0.17 -2.31 9.97 -26.73 -0.27 -2.57 16 25 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 27 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.06 0.47 6.57 -51.93 -0.34 0.13 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.07 0.82 7.95 -51.93 -0.41 0.41 16 31 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 32 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.07 0.48 6.57 -51.93 -0.34 0.14 16 34 H 0.06 0.46 7.46 -51.93 -0.39 0.08 16 35 H 0.40 3.89 7.76 -40.82 -0.32 3.57 16 36 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 37 H 0.09 1.74 6.85 -51.93 -0.36 1.39 16 38 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 39 H 0.06 0.68 7.95 -51.93 -0.41 0.27 16 40 H 0.02 0.49 8.09 -51.93 -0.42 0.07 16 41 H 0.04 0.78 6.70 -51.93 -0.35 0.43 16 42 H 0.36 8.41 5.46 -40.82 -0.22 8.19 16 43 H 0.26 7.87 8.31 -40.82 -0.34 7.53 16 44 H 0.09 0.96 8.08 -51.93 -0.42 0.54 16 45 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 46 H 0.10 1.41 8.14 -51.92 -0.42 0.99 16 47 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 374.06 15.07 5.64 5.64 Total: -1.00 -33.90 374.06 -8.69 -42.59 By element: Atomic # 1 Polarization: 18.19 SS G_CDS: -8.65 Total: 9.53 kcal Atomic # 6 Polarization: -7.08 SS G_CDS: -1.14 Total: -8.22 kcal Atomic # 7 Polarization: -57.18 SS G_CDS: 0.13 Total: -57.06 kcal Atomic # 8 Polarization: -10.22 SS G_CDS: 0.09 Total: -10.13 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -4.74 Total: 17.65 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -33.90 -8.69 -42.59 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163840116.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.005 kcal (2) G-P(sol) polarization free energy of solvation -33.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds