Wall clock time and date at job start Tue Mar 31 2020 06:34:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.46845 * 2 1 4 4 C 1.53005 * 109.47120 * 180.02562 * 3 2 1 5 5 N 1.46900 * 109.47350 * 180.02562 * 4 3 2 6 6 C 1.46900 * 110.99566 * 293.95270 * 5 4 3 7 7 C 1.50702 * 109.47066 * 174.73986 * 6 5 4 8 8 H 1.07997 * 120.00062 * 114.52001 * 7 6 5 9 9 C 1.37875 * 119.99609 * 294.79861 * 7 6 5 10 10 N 1.31515 * 119.99738 * 179.72493 * 9 7 6 11 11 Si 1.86805 * 120.00329 * 359.72159 * 9 7 6 12 12 H 1.48496 * 109.46715 * 90.00113 * 11 9 7 13 13 H 1.48493 * 109.47096 * 210.00095 * 11 9 7 14 14 H 1.48497 * 109.46999 * 330.00211 * 11 9 7 15 15 C 1.46896 * 111.00106 * 170.00216 * 5 4 3 16 16 H 1.09002 * 109.49875 * 173.93769 * 15 5 4 17 17 C 1.53047 * 109.49556 * 293.99513 * 15 5 4 18 18 C 1.53042 * 109.53976 * 181.31890 * 17 15 5 19 19 C 1.53185 * 109.31078 * 298.63496 * 18 17 15 20 20 N 1.46930 * 108.77640 * 54.63322 * 19 18 17 21 21 C 1.34772 * 120.62706 * 126.36761 * 20 19 18 22 22 C 1.50704 * 120.00037 * 175.12163 * 21 20 19 23 23 O 1.21286 * 120.00427 * 355.12685 * 21 20 19 24 24 C 1.46918 * 118.73878 * 306.39281 * 20 19 18 25 25 H 1.08998 * 109.47351 * 299.99940 * 1 2 3 26 26 H 1.08996 * 109.47265 * 60.00233 * 1 2 3 27 27 H 1.09007 * 109.47174 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47351 * 240.00060 * 2 1 3 29 29 H 1.08996 * 109.47533 * 120.00247 * 2 1 3 30 30 H 1.09001 * 109.47114 * 60.00433 * 3 2 1 31 31 H 1.09000 * 109.47392 * 299.99687 * 3 2 1 32 32 H 1.08998 * 109.47347 * 59.99894 * 4 3 2 33 33 H 1.09009 * 109.46820 * 299.99856 * 4 3 2 34 34 H 1.09000 * 109.47325 * 54.73899 * 6 5 4 35 35 H 1.09000 * 109.46895 * 294.73502 * 6 5 4 36 36 H 0.97007 * 119.99717 * 180.02562 * 10 9 7 37 37 H 1.09001 * 109.45956 * 301.34288 * 17 15 5 38 38 H 1.09007 * 109.46087 * 61.29605 * 17 15 5 39 39 H 1.08991 * 109.49556 * 58.58680 * 18 17 15 40 40 H 1.09001 * 109.49571 * 178.68639 * 18 17 15 41 41 H 1.09001 * 109.58635 * 174.42125 * 19 18 17 42 42 H 1.09004 * 109.59186 * 294.70765 * 19 18 17 43 43 H 1.09003 * 109.46942 * 91.01191 * 22 21 20 44 44 H 1.08996 * 109.47637 * 211.01816 * 22 21 20 45 45 H 1.08997 * 109.46905 * 331.01855 * 22 21 20 46 46 H 1.09000 * 109.58470 * 293.81604 * 24 20 19 47 47 H 1.09000 * 109.58704 * 173.39534 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4426 -0.0006 5 7 4.0596 2.8276 0.0000 6 6 3.7096 3.5102 -1.2528 7 6 4.1122 4.9597 -1.1646 8 1 4.8867 5.3454 -1.8110 9 6 3.4958 5.7921 -0.2545 10 7 3.8510 7.0558 -0.1738 11 14 2.1563 5.1250 0.8636 12 1 2.7667 4.6158 2.1178 13 1 1.1948 6.2098 1.1859 14 1 1.4426 4.0192 0.1758 15 6 5.5085 2.8736 0.2375 16 1 5.8631 3.8984 0.1265 17 6 5.8098 2.3797 1.6544 18 6 7.3159 2.4582 1.9144 19 6 8.0495 1.5524 0.9204 20 7 7.6522 1.9275 -0.4435 21 6 8.5824 2.2252 -1.3722 22 6 8.1662 2.5007 -2.7942 23 8 9.7544 2.2712 -1.0637 24 6 6.2217 1.9725 -0.7754 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 1.6766 1.9563 0.8900 31 1 1.6766 1.9564 -0.8900 32 1 3.9330 0.9289 -0.8908 33 1 3.9337 0.9286 0.8892 34 1 2.6341 3.4411 -1.4160 35 1 4.2342 3.0373 -2.0830 36 1 3.4175 7.6414 0.4668 37 1 5.2836 3.0043 2.3762 38 1 5.4768 1.3468 1.7574 39 1 7.6539 3.4866 1.7873 40 1 7.5272 2.1283 2.9316 41 1 9.1259 1.6798 1.0356 42 1 7.7825 0.5123 1.1079 43 1 7.9854 3.5683 -2.9195 44 1 8.9584 2.1842 -3.4726 45 1 7.2534 1.9489 -3.0190 46 1 5.8038 0.9669 -0.7278 47 1 6.0920 2.3771 -1.7792 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169614711.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:49 Heat of formation + Delta-G solvation = -43.072200 kcal Electronic energy + Delta-G solvation = -24281.593308 eV Core-core repulsion = 21077.891442 eV Total energy + Delta-G solvation = -3203.701866 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.09217 -38.24321 -36.06274 -34.30878 -32.80724 -32.33534 -30.13449 -29.13302 -28.83393 -26.24522 -24.99599 -23.13015 -22.65055 -21.19290 -20.72122 -19.64912 -18.43138 -17.03130 -16.56229 -15.73214 -15.31965 -15.21539 -14.61918 -14.55639 -14.41291 -13.98564 -13.47243 -13.33363 -13.29918 -13.18441 -12.91320 -12.65041 -12.47941 -12.17381 -11.94983 -11.88430 -11.72546 -11.26704 -11.19242 -10.86177 -10.71955 -10.70180 -10.54606 -10.43748 -10.31354 -10.01463 -9.81205 -9.66133 -9.55126 -9.17315 -8.56385 -8.54763 -7.28755 -6.06601 -4.14693 2.82177 3.22389 3.49027 3.53549 3.62106 4.50759 4.58894 4.85718 5.04464 5.10892 5.17043 5.20548 5.24326 5.29601 5.35474 5.38684 5.48541 5.50040 5.54184 5.62278 5.74843 5.76483 5.85530 5.90988 5.95440 5.98533 6.00704 6.02601 6.06841 6.18401 6.20916 6.26242 6.37167 6.50864 6.57068 6.66356 6.68460 6.73618 6.79558 7.07553 7.54923 7.61406 7.92417 8.13145 8.36310 8.50995 8.91974 9.58103 11.02923 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.013023 B = 0.006898 C = 0.005494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2149.489394 B = 4057.960521 C = 5095.555199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.122 4.122 3 C -0.120 4.120 4 C 0.045 3.955 5 N -0.528 5.528 6 C 0.148 3.852 7 C -0.524 4.524 8 H 0.067 0.933 9 C 0.085 3.915 10 N -0.898 5.898 11 Si 0.914 3.086 12 H -0.277 1.277 13 H -0.315 1.315 14 H -0.260 1.260 15 C 0.084 3.916 16 H 0.108 0.892 17 C -0.113 4.113 18 C -0.132 4.132 19 C 0.112 3.888 20 N -0.605 5.605 21 C 0.516 3.484 22 C -0.175 4.175 23 O -0.561 6.561 24 C 0.076 3.924 25 H 0.052 0.948 26 H 0.053 0.947 27 H 0.049 0.951 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.065 0.935 31 H 0.066 0.934 32 H 0.025 0.975 33 H 0.063 0.937 34 H 0.042 0.958 35 H 0.001 0.999 36 H 0.263 0.737 37 H 0.071 0.929 38 H 0.056 0.944 39 H 0.069 0.931 40 H 0.070 0.930 41 H 0.088 0.912 42 H 0.061 0.939 43 H 0.098 0.902 44 H 0.088 0.912 45 H 0.080 0.920 46 H 0.062 0.938 47 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.074 -14.208 0.870 14.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.160 4.160 3 C -0.158 4.158 4 C -0.083 4.083 5 N -0.253 5.253 6 C 0.024 3.976 7 C -0.562 4.562 8 H 0.085 0.915 9 C -0.120 4.120 10 N -0.535 5.535 11 Si 0.745 3.255 12 H -0.203 1.203 13 H -0.244 1.244 14 H -0.185 1.185 15 C -0.026 4.026 16 H 0.126 0.874 17 C -0.151 4.151 18 C -0.171 4.171 19 C -0.011 4.011 20 N -0.339 5.339 21 C 0.305 3.695 22 C -0.235 4.235 23 O -0.440 6.440 24 C -0.048 4.048 25 H 0.072 0.928 26 H 0.072 0.928 27 H 0.068 0.932 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.084 0.916 31 H 0.085 0.915 32 H 0.043 0.957 33 H 0.081 0.919 34 H 0.060 0.940 35 H 0.019 0.981 36 H 0.072 0.928 37 H 0.090 0.910 38 H 0.074 0.926 39 H 0.088 0.912 40 H 0.089 0.911 41 H 0.106 0.894 42 H 0.079 0.921 43 H 0.116 0.884 44 H 0.107 0.893 45 H 0.099 0.901 46 H 0.081 0.919 47 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 0.413 -13.767 1.474 13.852 hybrid contribution -0.450 -0.578 0.039 0.734 sum -0.037 -14.345 1.513 14.425 Atomic orbital electron populations 1.21758 0.96209 1.00931 1.01933 1.21504 0.95610 0.97495 1.01375 1.21750 0.95514 0.95456 1.03032 1.22202 0.95036 0.91703 0.99402 1.62707 1.11100 1.12204 1.39255 1.20336 0.96988 0.94718 0.85546 1.20868 1.22819 0.91194 1.21321 0.91450 1.25039 0.96592 0.94159 0.96191 1.69967 1.42387 1.05173 1.35949 0.86251 0.80662 0.77082 0.81532 1.20294 1.24405 1.18475 1.21851 0.87774 1.00715 0.92213 0.87389 1.21620 0.94645 1.00914 0.97890 1.21897 0.96083 1.00782 0.98349 1.21556 1.00701 0.97693 0.81121 1.48111 1.06850 1.67760 1.11152 1.20786 0.85276 0.75512 0.87894 1.21944 1.03462 1.04920 0.93131 1.90659 1.18223 1.52907 1.82207 1.22671 0.79583 1.00699 1.01896 0.92849 0.92772 0.93237 0.92458 0.92456 0.91610 0.91496 0.95731 0.91875 0.93979 0.98073 0.92760 0.90990 0.92567 0.91199 0.91100 0.89401 0.92056 0.88376 0.89326 0.90125 0.91949 0.89205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.68 9.91 37.16 0.37 -1.31 16 2 C -0.12 -1.46 5.93 -26.73 -0.16 -1.62 16 3 C -0.12 -1.83 4.28 -26.73 -0.11 -1.95 16 4 C 0.04 0.69 3.91 -3.82 -0.01 0.68 16 5 N -0.53 -10.02 2.56 -227.94 -0.58 -10.60 16 6 C 0.15 3.16 4.06 -4.97 -0.02 3.14 16 7 C -0.52 -13.73 8.39 -34.44 -0.29 -14.02 16 8 H 0.07 1.94 8.06 -52.49 -0.42 1.51 16 9 C 0.08 2.34 5.47 -17.82 -0.10 2.24 16 10 N -0.90 -26.75 13.96 55.43 0.77 -25.97 16 11 Si 0.91 22.11 26.01 -169.99 -4.42 17.69 16 12 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 13 H -0.32 -7.89 7.11 56.52 0.40 -7.49 16 14 H -0.26 -5.83 4.91 56.52 0.28 -5.55 16 15 C 0.08 1.50 2.19 -67.60 -0.15 1.35 16 16 H 0.11 2.38 6.82 -51.93 -0.35 2.02 16 17 C -0.11 -1.75 5.08 -26.69 -0.14 -1.89 16 18 C -0.13 -1.85 6.08 -26.61 -0.16 -2.01 16 19 C 0.11 1.56 6.44 -3.71 -0.02 1.54 16 20 N -0.61 -9.31 2.97 -172.78 -0.51 -9.82 16 21 C 0.52 8.47 7.80 -10.99 -0.09 8.38 16 22 C -0.18 -2.29 9.36 36.01 0.34 -1.95 16 23 O -0.56 -10.95 16.52 5.55 0.09 -10.86 16 24 C 0.08 1.15 4.73 -3.72 -0.02 1.14 16 25 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 29 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.07 1.11 7.37 -51.93 -0.38 0.73 16 31 H 0.07 1.11 6.34 -51.93 -0.33 0.78 16 32 H 0.02 0.36 6.71 -51.93 -0.35 0.01 16 33 H 0.06 0.91 6.11 -51.92 -0.32 0.59 16 34 H 0.04 0.92 4.93 -51.93 -0.26 0.66 16 35 H 0.00 0.02 6.70 -51.93 -0.35 -0.33 16 36 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 37 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 38 H 0.06 0.78 6.42 -51.93 -0.33 0.45 16 39 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 40 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.09 1.30 7.00 -51.93 -0.36 0.93 16 42 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.10 1.31 8.14 -51.93 -0.42 0.89 16 44 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 45 H 0.08 0.93 6.38 -51.93 -0.33 0.60 16 46 H 0.06 0.87 6.27 -51.93 -0.33 0.54 16 47 H 0.09 1.39 4.47 -51.93 -0.23 1.16 16 LS Contribution 346.20 15.07 5.22 5.22 Total: -1.00 -30.41 346.20 -8.25 -38.66 By element: Atomic # 1 Polarization: 10.23 SS G_CDS: -8.25 Total: 1.97 kcal Atomic # 6 Polarization: -5.73 SS G_CDS: -0.56 Total: -6.29 kcal Atomic # 7 Polarization: -46.07 SS G_CDS: -0.32 Total: -46.40 kcal Atomic # 8 Polarization: -10.95 SS G_CDS: 0.09 Total: -10.86 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -4.42 Total: 17.69 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -30.41 -8.25 -38.66 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169614711.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.408 kcal (2) G-P(sol) polarization free energy of solvation -30.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds