Wall clock time and date at job start Tue Mar 31 2020 06:34:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.46845 * 2 1 4 4 C 1.53005 * 109.47120 * 180.02562 * 3 2 1 5 5 N 1.46900 * 109.47350 * 180.02562 * 4 3 2 6 6 C 1.46900 * 110.99566 * 293.95270 * 5 4 3 7 7 C 1.50702 * 109.47066 * 174.73986 * 6 5 4 8 8 H 1.07997 * 120.00062 * 114.52001 * 7 6 5 9 9 C 1.37875 * 119.99609 * 294.79861 * 7 6 5 10 10 N 1.31515 * 119.99738 * 179.72493 * 9 7 6 11 11 Si 1.86805 * 120.00329 * 359.72159 * 9 7 6 12 12 H 1.48496 * 109.46715 * 90.00113 * 11 9 7 13 13 H 1.48493 * 109.47096 * 210.00095 * 11 9 7 14 14 H 1.48497 * 109.46999 * 330.00211 * 11 9 7 15 15 C 1.46896 * 111.00106 * 170.00216 * 5 4 3 16 16 H 1.09002 * 109.49875 * 173.93769 * 15 5 4 17 17 C 1.53047 * 109.49556 * 293.99513 * 15 5 4 18 18 C 1.53042 * 109.53976 * 181.31890 * 17 15 5 19 19 C 1.53185 * 109.31078 * 298.63496 * 18 17 15 20 20 N 1.46930 * 108.77640 * 54.63322 * 19 18 17 21 21 C 1.34772 * 120.62706 * 126.36761 * 20 19 18 22 22 C 1.50704 * 120.00037 * 175.12163 * 21 20 19 23 23 O 1.21286 * 120.00427 * 355.12685 * 21 20 19 24 24 C 1.46918 * 118.73878 * 306.39281 * 20 19 18 25 25 H 1.08998 * 109.47351 * 299.99940 * 1 2 3 26 26 H 1.08996 * 109.47265 * 60.00233 * 1 2 3 27 27 H 1.09007 * 109.47174 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47351 * 240.00060 * 2 1 3 29 29 H 1.08996 * 109.47533 * 120.00247 * 2 1 3 30 30 H 1.09001 * 109.47114 * 60.00433 * 3 2 1 31 31 H 1.09000 * 109.47392 * 299.99687 * 3 2 1 32 32 H 1.08998 * 109.47347 * 59.99894 * 4 3 2 33 33 H 1.09009 * 109.46820 * 299.99856 * 4 3 2 34 34 H 1.09000 * 109.47325 * 54.73899 * 6 5 4 35 35 H 1.09000 * 109.46895 * 294.73502 * 6 5 4 36 36 H 0.97007 * 119.99717 * 180.02562 * 10 9 7 37 37 H 1.09001 * 109.45956 * 301.34288 * 17 15 5 38 38 H 1.09007 * 109.46087 * 61.29605 * 17 15 5 39 39 H 1.08991 * 109.49556 * 58.58680 * 18 17 15 40 40 H 1.09001 * 109.49571 * 178.68639 * 18 17 15 41 41 H 1.09001 * 109.58635 * 174.42125 * 19 18 17 42 42 H 1.09004 * 109.59186 * 294.70765 * 19 18 17 43 43 H 1.09003 * 109.46942 * 91.01191 * 22 21 20 44 44 H 1.08996 * 109.47637 * 211.01816 * 22 21 20 45 45 H 1.08997 * 109.46905 * 331.01855 * 22 21 20 46 46 H 1.09000 * 109.58470 * 293.81604 * 24 20 19 47 47 H 1.09000 * 109.58704 * 173.39534 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4426 -0.0006 5 7 4.0596 2.8276 0.0000 6 6 3.7096 3.5102 -1.2528 7 6 4.1122 4.9597 -1.1646 8 1 4.8867 5.3454 -1.8110 9 6 3.4958 5.7921 -0.2545 10 7 3.8510 7.0558 -0.1738 11 14 2.1563 5.1250 0.8636 12 1 2.7667 4.6158 2.1178 13 1 1.1948 6.2098 1.1859 14 1 1.4426 4.0192 0.1758 15 6 5.5085 2.8736 0.2375 16 1 5.8631 3.8984 0.1265 17 6 5.8098 2.3797 1.6544 18 6 7.3159 2.4582 1.9144 19 6 8.0495 1.5524 0.9204 20 7 7.6522 1.9275 -0.4435 21 6 8.5824 2.2252 -1.3722 22 6 8.1662 2.5007 -2.7942 23 8 9.7544 2.2712 -1.0637 24 6 6.2217 1.9725 -0.7754 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 1.6766 1.9563 0.8900 31 1 1.6766 1.9564 -0.8900 32 1 3.9330 0.9289 -0.8908 33 1 3.9337 0.9286 0.8892 34 1 2.6341 3.4411 -1.4160 35 1 4.2342 3.0373 -2.0830 36 1 3.4175 7.6414 0.4668 37 1 5.2836 3.0043 2.3762 38 1 5.4768 1.3468 1.7574 39 1 7.6539 3.4866 1.7873 40 1 7.5272 2.1283 2.9316 41 1 9.1259 1.6798 1.0356 42 1 7.7825 0.5123 1.1079 43 1 7.9854 3.5683 -2.9195 44 1 8.9584 2.1842 -3.4726 45 1 7.2534 1.9489 -3.0190 46 1 5.8038 0.9669 -0.7278 47 1 6.0920 2.3771 -1.7792 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169614711.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:48 Heat of formation + Delta-G solvation = -61.867572 kcal Electronic energy + Delta-G solvation = -24282.408337 eV Core-core repulsion = 21077.891442 eV Total energy + Delta-G solvation = -3204.516894 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.38796 -39.64027 -37.34081 -35.54693 -34.42969 -33.91467 -31.40618 -30.44398 -30.22018 -27.69781 -26.23747 -24.39360 -24.22635 -22.46923 -21.87274 -21.07502 -19.73270 -18.64764 -18.13835 -17.03154 -16.63530 -16.55175 -16.06284 -16.00422 -15.88033 -15.30400 -15.06025 -14.72962 -14.42489 -14.22012 -14.10836 -14.05347 -13.73457 -13.58089 -13.22411 -13.07764 -12.92505 -12.72740 -12.55141 -12.33062 -12.03045 -11.99552 -11.79096 -11.74205 -11.67680 -11.51395 -11.41430 -11.11176 -11.04493 -10.84881 -10.67397 -9.84232 -8.74785 -8.21825 -6.32015 1.50065 1.53631 1.56897 1.66540 2.03757 2.52399 2.99532 3.41353 3.69334 3.82788 3.94612 4.04912 4.10760 4.12401 4.21624 4.33458 4.36555 4.37532 4.44686 4.52335 4.58009 4.60197 4.72358 4.79807 4.84098 4.86595 4.90378 4.94004 4.98393 5.03589 5.08979 5.11786 5.16928 5.22752 5.32742 5.36321 5.48879 5.50067 5.54575 5.55807 5.65367 6.12173 6.34601 6.47893 6.66244 6.85515 7.09506 7.43819 8.91065 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.013023 B = 0.006898 C = 0.005494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2149.489394 B = 4057.960521 C = 5095.555199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.114 4.114 3 C -0.121 4.121 4 C 0.046 3.954 5 N -0.543 5.543 6 C 0.161 3.839 7 C -0.516 4.516 8 H 0.025 0.975 9 C 0.030 3.970 10 N -0.952 5.952 11 Si 0.973 3.027 12 H -0.278 1.278 13 H -0.328 1.328 14 H -0.231 1.231 15 C 0.086 3.914 16 H 0.054 0.946 17 C -0.106 4.106 18 C -0.126 4.126 19 C 0.110 3.890 20 N -0.606 5.606 21 C 0.506 3.494 22 C -0.170 4.170 23 O -0.598 6.598 24 C 0.086 3.914 25 H 0.047 0.953 26 H 0.048 0.952 27 H 0.067 0.933 28 H 0.069 0.931 29 H 0.070 0.930 30 H 0.048 0.952 31 H 0.050 0.950 32 H 0.045 0.955 33 H 0.084 0.916 34 H 0.044 0.956 35 H 0.017 0.983 36 H 0.261 0.739 37 H 0.051 0.949 38 H 0.086 0.914 39 H 0.039 0.961 40 H 0.100 0.900 41 H 0.077 0.923 42 H 0.093 0.907 43 H 0.090 0.910 44 H 0.104 0.896 45 H 0.099 0.901 46 H 0.092 0.908 47 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.003 -18.202 1.269 18.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.152 4.152 3 C -0.159 4.159 4 C -0.081 4.081 5 N -0.268 5.268 6 C 0.036 3.964 7 C -0.554 4.554 8 H 0.044 0.956 9 C -0.169 4.169 10 N -0.592 5.592 11 Si 0.802 3.198 12 H -0.204 1.204 13 H -0.258 1.258 14 H -0.154 1.154 15 C -0.024 4.024 16 H 0.072 0.928 17 C -0.144 4.144 18 C -0.164 4.164 19 C -0.012 4.012 20 N -0.338 5.338 21 C 0.297 3.703 22 C -0.229 4.229 23 O -0.480 6.480 24 C -0.038 4.038 25 H 0.066 0.934 26 H 0.067 0.933 27 H 0.086 0.914 28 H 0.088 0.912 29 H 0.089 0.911 30 H 0.066 0.934 31 H 0.069 0.931 32 H 0.063 0.937 33 H 0.102 0.898 34 H 0.062 0.938 35 H 0.035 0.965 36 H 0.069 0.931 37 H 0.070 0.930 38 H 0.104 0.896 39 H 0.058 0.942 40 H 0.119 0.881 41 H 0.095 0.905 42 H 0.111 0.889 43 H 0.108 0.892 44 H 0.123 0.877 45 H 0.118 0.882 46 H 0.110 0.890 47 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -0.679 -17.801 1.864 17.911 hybrid contribution -0.049 0.669 -0.120 0.682 sum -0.728 -17.131 1.744 17.235 Atomic orbital electron populations 1.21775 0.95785 1.02022 1.01434 1.21449 0.95970 0.95193 1.02628 1.21748 0.95243 0.97534 1.01356 1.22313 0.95253 0.89312 1.01271 1.62366 1.11988 1.14952 1.37508 1.20058 0.97051 0.91922 0.87382 1.21127 1.20726 0.94114 1.19473 0.95625 1.25822 0.99001 0.94160 0.97903 1.70112 1.44578 1.06865 1.37640 0.85324 0.78012 0.76738 0.79721 1.20431 1.25820 1.15401 1.21707 0.87361 0.98612 0.94718 0.92779 1.21562 0.95350 1.01922 0.95536 1.21852 0.95019 0.99337 1.00220 1.21689 1.00090 0.99195 0.80190 1.48227 1.06796 1.67074 1.11730 1.21363 0.84906 0.74833 0.89206 1.21952 1.04911 1.04662 0.91418 1.90638 1.19744 1.54618 1.83023 1.22558 0.79214 1.01389 1.00671 0.93380 0.93329 0.91385 0.91202 0.91124 0.93360 0.93103 0.93702 0.89820 0.93802 0.96533 0.93090 0.92980 0.89603 0.94197 0.88116 0.90467 0.88901 0.89167 0.87740 0.88208 0.88983 0.89633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.86 9.91 71.98 0.71 -2.14 16 2 C -0.11 -2.24 5.93 30.59 0.18 -2.06 16 3 C -0.12 -3.25 4.28 30.60 0.13 -3.12 16 4 C 0.05 1.22 3.91 86.31 0.34 1.56 16 5 N -0.54 -19.51 2.56 -875.05 -2.24 -21.75 16 6 C 0.16 6.70 4.06 85.56 0.35 7.04 16 7 C -0.52 -27.85 8.39 25.60 0.21 -27.64 16 8 H 0.03 1.55 8.06 -2.91 -0.02 1.53 16 9 C 0.03 1.69 5.47 84.65 0.46 2.16 16 10 N -0.95 -59.43 13.96 21.45 0.30 -59.13 16 11 Si 0.97 46.25 26.01 68.60 1.78 48.03 16 12 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 13 H -0.33 -16.21 7.11 99.48 0.71 -15.51 16 14 H -0.23 -9.73 4.91 99.48 0.49 -9.24 16 15 C 0.09 2.95 2.19 44.99 0.10 3.05 16 16 H 0.05 2.46 6.82 -2.39 -0.02 2.45 16 17 C -0.11 -3.05 5.08 30.62 0.16 -2.90 16 18 C -0.13 -3.31 6.08 30.67 0.19 -3.12 16 19 C 0.11 2.82 6.44 86.36 0.56 3.38 16 20 N -0.61 -17.59 2.97 -818.93 -2.43 -20.02 16 21 C 0.51 16.22 7.80 87.66 0.68 16.91 16 22 C -0.17 -4.25 9.36 71.24 0.67 -3.59 16 23 O -0.60 -23.33 16.52 -3.05 -0.05 -23.38 16 24 C 0.09 2.39 4.73 86.36 0.41 2.80 16 25 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 26 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 27 H 0.07 1.02 8.14 -2.38 -0.02 1.00 16 28 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 29 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 30 H 0.05 1.47 7.37 -2.39 -0.02 1.45 16 31 H 0.05 1.53 6.34 -2.39 -0.02 1.51 16 32 H 0.04 1.06 6.71 -2.39 -0.02 1.04 16 33 H 0.08 1.95 6.11 -2.38 -0.01 1.93 16 34 H 0.04 1.83 4.93 -2.39 -0.01 1.82 16 35 H 0.02 0.63 6.70 -2.39 -0.02 0.61 16 36 H 0.26 15.52 8.31 -92.70 -0.77 14.74 16 37 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 38 H 0.09 1.99 6.42 -2.38 -0.02 1.97 16 39 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 40 H 0.10 2.07 8.14 -2.39 -0.02 2.05 16 41 H 0.08 2.18 7.00 -2.39 -0.02 2.17 16 42 H 0.09 1.85 8.14 -2.38 -0.02 1.83 16 43 H 0.09 2.42 8.14 -2.39 -0.02 2.40 16 44 H 0.10 2.26 8.14 -2.39 -0.02 2.24 16 45 H 0.10 2.07 6.38 -2.39 -0.02 2.06 16 46 H 0.09 2.09 6.27 -2.39 -0.01 2.07 16 47 H 0.09 2.47 4.47 -2.39 -0.01 2.46 16 Total: -1.00 -69.83 346.20 3.22 -66.61 By element: Atomic # 1 Polarization: 16.60 SS G_CDS: 0.71 Total: 17.32 kcal Atomic # 6 Polarization: -12.82 SS G_CDS: 5.14 Total: -7.67 kcal Atomic # 7 Polarization: -96.53 SS G_CDS: -4.38 Total: -100.90 kcal Atomic # 8 Polarization: -23.33 SS G_CDS: -0.05 Total: -23.38 kcal Atomic # 14 Polarization: 46.25 SS G_CDS: 1.78 Total: 48.03 kcal Total: -69.83 3.22 -66.61 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169614711.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.744 kcal (2) G-P(sol) polarization free energy of solvation -69.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds