Wall clock time and date at job start Tue Mar 31 2020 06:34:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53010 * 109.46946 * 2 1 4 4 C 1.52994 * 109.46946 * 179.97438 * 3 2 1 5 5 N 1.46904 * 109.46841 * 175.21252 * 4 3 2 6 6 C 1.46905 * 110.99668 * 70.57325 * 5 4 3 7 7 C 1.50697 * 109.47183 * 63.65304 * 6 5 4 8 8 H 1.08003 * 119.99961 * 3.58709 * 7 6 5 9 9 C 1.37880 * 120.00086 * 183.59179 * 7 6 5 10 10 N 1.31507 * 120.00169 * 179.97438 * 9 7 6 11 11 Si 1.86797 * 119.99565 * 359.97438 * 9 7 6 12 12 H 1.48497 * 109.47179 * 90.00347 * 11 9 7 13 13 H 1.48506 * 109.46838 * 210.00045 * 11 9 7 14 14 H 1.48498 * 109.47637 * 329.99790 * 11 9 7 15 15 C 1.46906 * 110.99918 * 194.52490 * 5 4 3 16 16 H 1.08995 * 109.52346 * 300.32373 * 15 5 4 17 17 C 1.53043 * 109.49539 * 180.24484 * 15 5 4 18 18 C 1.53035 * 109.52551 * 178.67560 * 17 15 5 19 19 C 1.53194 * 109.31269 * 61.37298 * 18 17 15 20 20 N 1.46927 * 108.77310 * 305.36472 * 19 18 17 21 21 C 1.34776 * 120.62659 * 233.58349 * 20 19 18 22 22 C 1.50697 * 120.00125 * 0.02562 * 21 20 19 23 23 O 1.21279 * 119.99827 * 180.02562 * 21 20 19 24 24 C 1.46921 * 118.74014 * 53.60940 * 20 19 18 25 25 H 1.09001 * 109.47244 * 299.99931 * 1 2 3 26 26 H 1.09001 * 109.47401 * 60.00011 * 1 2 3 27 27 H 1.09003 * 109.47267 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46947 * 240.00527 * 2 1 3 29 29 H 1.08992 * 109.47260 * 119.99820 * 2 1 3 30 30 H 1.08992 * 109.47026 * 59.99901 * 3 2 1 31 31 H 1.09001 * 109.47061 * 300.00197 * 3 2 1 32 32 H 1.09009 * 109.47114 * 55.22109 * 4 3 2 33 33 H 1.08998 * 109.47720 * 295.21541 * 4 3 2 34 34 H 1.09003 * 109.46824 * 183.65364 * 6 5 4 35 35 H 1.09000 * 109.46633 * 303.64824 * 6 5 4 36 36 H 0.96998 * 120.00115 * 179.97438 * 10 9 7 37 37 H 1.08999 * 109.46027 * 58.66347 * 17 15 5 38 38 H 1.08994 * 109.46074 * 298.69493 * 17 15 5 39 39 H 1.09003 * 109.49798 * 181.32196 * 18 17 15 40 40 H 1.08998 * 109.50072 * 301.41995 * 18 17 15 41 41 H 1.09000 * 109.58265 * 65.15341 * 19 18 17 42 42 H 1.09001 * 109.58833 * 185.43157 * 19 18 17 43 43 H 1.09001 * 109.47019 * 89.99892 * 22 21 20 44 44 H 1.09003 * 109.46878 * 209.99834 * 22 21 20 45 45 H 1.08991 * 109.47491 * 329.99927 * 22 21 20 46 46 H 1.09000 * 109.58883 * 66.17471 * 24 20 19 47 47 H 1.08996 * 109.58590 * 186.45450 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4426 0.0006 5 7 4.0595 2.8228 -0.1150 6 6 3.8044 3.5770 1.1196 7 6 4.5818 2.9612 2.2542 8 1 5.2480 2.1324 2.0652 9 6 4.4426 3.4558 3.5337 10 7 5.1207 2.9181 4.5239 11 14 3.2909 4.8897 3.8605 12 1 1.9356 4.3733 4.1795 13 1 3.8011 5.6828 5.0077 14 1 3.2205 5.7530 2.6543 15 6 5.4869 2.8477 -0.4616 16 1 6.0584 2.3332 0.3108 17 6 5.9616 4.2988 -0.5671 18 6 7.4560 4.3255 -0.8957 19 6 7.6901 3.6408 -2.2460 20 7 7.1062 2.2934 -2.2005 21 6 7.8479 1.2127 -2.5142 22 6 9.2907 1.3798 -2.9159 23 8 7.3542 0.1057 -2.4732 24 6 5.6983 2.1465 -1.8071 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8932 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 1.6766 1.9564 0.8899 31 1 1.6765 1.9564 -0.8900 32 1 3.9336 0.8562 -0.8433 33 1 3.9329 1.0050 0.9305 34 1 4.1176 4.6122 0.9842 35 1 2.7395 3.5468 1.3502 36 1 5.0231 3.2663 5.4240 37 1 5.7893 4.8071 0.3816 38 1 5.4070 4.8059 -1.3566 39 1 7.7988 5.3589 -0.9476 40 1 8.0089 3.7969 -0.1191 41 1 7.2126 4.2196 -3.0367 42 1 8.7605 3.5712 -2.4397 43 1 9.9228 1.3297 -2.0293 44 1 9.5700 0.5842 -3.6067 45 1 9.4229 2.3462 -3.4022 46 1 5.0583 2.6033 -2.5620 47 1 5.4538 1.0885 -1.7125 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169614712.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:53 Heat of formation + Delta-G solvation = -44.367665 kcal Electronic energy + Delta-G solvation = -23844.119279 eV Core-core repulsion = 20640.361238 eV Total energy + Delta-G solvation = -3203.758041 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.04957 -38.04758 -36.20545 -34.26585 -32.53934 -32.05936 -30.83847 -29.09950 -28.55684 -26.25277 -24.91447 -23.14012 -22.38579 -21.35565 -20.16939 -19.19981 -18.81903 -17.07190 -16.85140 -15.75132 -15.29428 -15.10552 -14.63595 -14.55284 -14.19304 -13.90552 -13.70593 -13.37495 -13.13290 -12.95076 -12.74532 -12.51112 -12.36915 -12.21274 -11.99013 -11.82173 -11.42699 -11.35633 -11.00674 -10.81269 -10.76340 -10.69026 -10.50032 -10.37019 -10.19960 -10.06189 -9.81470 -9.68374 -9.63598 -9.41183 -8.59854 -8.42540 -7.21531 -6.11723 -4.10906 2.74807 3.15124 3.24939 3.33102 3.35685 4.37210 4.64171 4.70385 4.98820 5.09300 5.15440 5.21433 5.30109 5.33412 5.37544 5.41627 5.48726 5.53695 5.59126 5.72581 5.79531 5.86162 5.89568 6.03370 6.10699 6.12011 6.17039 6.21369 6.31962 6.35269 6.40826 6.49543 6.57838 6.63258 6.74896 6.82503 6.89816 6.95809 6.98062 7.13333 7.55320 7.57902 8.04206 8.10029 8.31065 8.43734 8.91454 9.51148 11.01306 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.012137 B = 0.006307 C = 0.004701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2306.432285 B = 4438.733780 C = 5955.157594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.123 4.123 3 C -0.109 4.109 4 C 0.052 3.948 5 N -0.529 5.529 6 C 0.152 3.848 7 C -0.546 4.546 8 H 0.073 0.927 9 C 0.073 3.927 10 N -0.899 5.899 11 Si 0.875 3.125 12 H -0.276 1.276 13 H -0.288 1.288 14 H -0.264 1.264 15 C 0.082 3.918 16 H 0.056 0.944 17 C -0.111 4.111 18 C -0.134 4.134 19 C 0.105 3.895 20 N -0.608 5.608 21 C 0.510 3.490 22 C -0.174 4.174 23 O -0.552 6.552 24 C 0.115 3.885 25 H 0.052 0.948 26 H 0.050 0.950 27 H 0.047 0.953 28 H 0.056 0.944 29 H 0.060 0.940 30 H 0.063 0.937 31 H 0.059 0.941 32 H 0.055 0.945 33 H 0.051 0.949 34 H 0.031 0.969 35 H 0.027 0.973 36 H 0.263 0.737 37 H 0.081 0.919 38 H 0.060 0.940 39 H 0.073 0.927 40 H 0.068 0.932 41 H 0.067 0.933 42 H 0.084 0.916 43 H 0.092 0.908 44 H 0.089 0.911 45 H 0.081 0.919 46 H 0.069 0.931 47 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.729 1.839 -13.952 14.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.162 4.162 3 C -0.147 4.147 4 C -0.076 4.076 5 N -0.252 5.252 6 C 0.025 3.975 7 C -0.584 4.584 8 H 0.091 0.909 9 C -0.129 4.129 10 N -0.537 5.537 11 Si 0.702 3.298 12 H -0.202 1.202 13 H -0.214 1.214 14 H -0.189 1.189 15 C -0.028 4.028 16 H 0.073 0.927 17 C -0.149 4.149 18 C -0.172 4.172 19 C -0.018 4.018 20 N -0.341 5.341 21 C 0.298 3.702 22 C -0.234 4.234 23 O -0.430 6.430 24 C -0.008 4.008 25 H 0.072 0.928 26 H 0.069 0.931 27 H 0.066 0.934 28 H 0.075 0.925 29 H 0.079 0.921 30 H 0.082 0.918 31 H 0.077 0.923 32 H 0.074 0.926 33 H 0.070 0.930 34 H 0.049 0.951 35 H 0.045 0.955 36 H 0.073 0.927 37 H 0.100 0.900 38 H 0.079 0.921 39 H 0.091 0.909 40 H 0.087 0.913 41 H 0.086 0.914 42 H 0.102 0.898 43 H 0.111 0.889 44 H 0.108 0.892 45 H 0.100 0.900 46 H 0.087 0.913 47 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 2.240 1.499 -14.127 14.382 hybrid contribution -0.088 0.465 1.227 1.315 sum 2.152 1.964 -12.900 13.225 Atomic orbital electron populations 1.21748 0.96436 1.00850 1.01570 1.21489 0.95259 0.97729 1.01674 1.21507 0.95661 0.95489 1.02009 1.22067 0.94677 0.90310 1.00538 1.62455 1.13983 1.13090 1.35684 1.20244 0.96498 0.94247 0.86495 1.21638 1.26462 1.18367 0.91976 0.90874 1.24945 0.95357 0.96490 0.96144 1.69926 1.41713 1.41679 1.00372 0.86860 0.81499 0.83230 0.78205 1.20210 1.21383 1.18857 1.21652 0.90703 0.95762 0.94643 0.92652 1.21563 0.93673 0.96845 1.02812 1.21922 0.98294 1.00448 0.96560 1.21847 0.98678 0.82818 0.98435 1.48155 1.12398 1.06621 1.66972 1.20749 0.88693 0.83964 0.76761 1.21954 0.93381 1.04236 1.03816 1.90701 1.73660 1.24932 1.53753 1.21765 0.80012 1.02355 0.96639 0.92847 0.93085 0.93356 0.92541 0.92089 0.91796 0.92259 0.92624 0.93039 0.95120 0.95518 0.92739 0.90017 0.92090 0.90858 0.91301 0.91422 0.89824 0.88902 0.89218 0.90034 0.91301 0.89300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.92 9.91 37.15 0.37 -1.55 16 2 C -0.12 -1.85 5.93 -26.73 -0.16 -2.01 16 3 C -0.11 -1.88 5.14 -26.73 -0.14 -2.01 16 4 C 0.05 1.01 4.67 -3.82 -0.02 1.00 16 5 N -0.53 -10.57 4.55 -227.93 -1.04 -11.61 16 6 C 0.15 3.49 3.57 -4.97 -0.02 3.47 16 7 C -0.55 -14.71 8.03 -34.44 -0.28 -14.99 16 8 H 0.07 2.19 6.16 -52.48 -0.32 1.87 16 9 C 0.07 2.05 5.47 -17.82 -0.10 1.96 16 10 N -0.90 -27.04 13.96 55.43 0.77 -26.26 16 11 Si 0.87 21.03 27.40 -169.99 -4.66 16.37 16 12 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 13 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 14 H -0.26 -6.06 6.65 56.52 0.38 -5.68 16 15 C 0.08 1.53 1.70 -67.59 -0.12 1.41 16 16 H 0.06 1.25 6.57 -51.93 -0.34 0.91 16 17 C -0.11 -1.82 4.84 -26.69 -0.13 -1.95 16 18 C -0.13 -1.73 6.08 -26.61 -0.16 -1.89 16 19 C 0.11 1.15 6.21 -3.71 -0.02 1.13 16 20 N -0.61 -8.75 2.97 -172.78 -0.51 -9.26 16 21 C 0.51 7.64 7.81 -10.99 -0.09 7.55 16 22 C -0.17 -1.69 9.46 36.00 0.34 -1.35 16 23 O -0.55 -10.70 16.51 5.56 0.09 -10.61 16 24 C 0.11 1.90 5.37 -3.72 -0.02 1.88 16 25 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.06 1.22 6.84 -51.93 -0.36 0.86 16 31 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.06 1.02 5.80 -51.92 -0.30 0.72 16 33 H 0.05 1.17 6.53 -51.93 -0.34 0.83 16 34 H 0.03 0.71 5.49 -51.93 -0.29 0.43 16 35 H 0.03 0.63 5.84 -51.93 -0.30 0.33 16 36 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 37 H 0.08 1.55 6.26 -51.93 -0.33 1.23 16 38 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 41 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 42 H 0.08 0.68 5.53 -51.93 -0.29 0.40 16 43 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 44 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 45 H 0.08 0.58 6.19 -51.93 -0.32 0.26 16 46 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 47 H 0.09 1.65 5.30 -51.93 -0.28 1.37 16 LS Contribution 351.11 15.07 5.29 5.29 Total: -1.00 -31.66 351.11 -8.70 -40.35 By element: Atomic # 1 Polarization: 11.21 SS G_CDS: -8.11 Total: 3.10 kcal Atomic # 6 Polarization: -6.83 SS G_CDS: -0.53 Total: -7.36 kcal Atomic # 7 Polarization: -46.36 SS G_CDS: -0.78 Total: -47.14 kcal Atomic # 8 Polarization: -10.70 SS G_CDS: 0.09 Total: -10.61 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -4.66 Total: 16.37 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -31.66 -8.70 -40.35 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169614712.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.013 kcal (2) G-P(sol) polarization free energy of solvation -31.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds