Wall clock time and date at job start Tue Mar 31 2020 06:34:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53010 * 109.46946 * 2 1 4 4 C 1.52994 * 109.46946 * 179.97438 * 3 2 1 5 5 N 1.46904 * 109.46841 * 175.21252 * 4 3 2 6 6 C 1.46905 * 110.99668 * 70.57325 * 5 4 3 7 7 C 1.50697 * 109.47183 * 63.65304 * 6 5 4 8 8 H 1.08003 * 119.99961 * 3.58709 * 7 6 5 9 9 C 1.37880 * 120.00086 * 183.59179 * 7 6 5 10 10 N 1.31507 * 120.00169 * 179.97438 * 9 7 6 11 11 Si 1.86797 * 119.99565 * 359.97438 * 9 7 6 12 12 H 1.48497 * 109.47179 * 90.00347 * 11 9 7 13 13 H 1.48506 * 109.46838 * 210.00045 * 11 9 7 14 14 H 1.48498 * 109.47637 * 329.99790 * 11 9 7 15 15 C 1.46906 * 110.99918 * 194.52490 * 5 4 3 16 16 H 1.08995 * 109.52346 * 300.32373 * 15 5 4 17 17 C 1.53043 * 109.49539 * 180.24484 * 15 5 4 18 18 C 1.53035 * 109.52551 * 178.67560 * 17 15 5 19 19 C 1.53194 * 109.31269 * 61.37298 * 18 17 15 20 20 N 1.46927 * 108.77310 * 305.36472 * 19 18 17 21 21 C 1.34776 * 120.62659 * 233.58349 * 20 19 18 22 22 C 1.50697 * 120.00125 * 0.02562 * 21 20 19 23 23 O 1.21279 * 119.99827 * 180.02562 * 21 20 19 24 24 C 1.46921 * 118.74014 * 53.60940 * 20 19 18 25 25 H 1.09001 * 109.47244 * 299.99931 * 1 2 3 26 26 H 1.09001 * 109.47401 * 60.00011 * 1 2 3 27 27 H 1.09003 * 109.47267 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46947 * 240.00527 * 2 1 3 29 29 H 1.08992 * 109.47260 * 119.99820 * 2 1 3 30 30 H 1.08992 * 109.47026 * 59.99901 * 3 2 1 31 31 H 1.09001 * 109.47061 * 300.00197 * 3 2 1 32 32 H 1.09009 * 109.47114 * 55.22109 * 4 3 2 33 33 H 1.08998 * 109.47720 * 295.21541 * 4 3 2 34 34 H 1.09003 * 109.46824 * 183.65364 * 6 5 4 35 35 H 1.09000 * 109.46633 * 303.64824 * 6 5 4 36 36 H 0.96998 * 120.00115 * 179.97438 * 10 9 7 37 37 H 1.08999 * 109.46027 * 58.66347 * 17 15 5 38 38 H 1.08994 * 109.46074 * 298.69493 * 17 15 5 39 39 H 1.09003 * 109.49798 * 181.32196 * 18 17 15 40 40 H 1.08998 * 109.50072 * 301.41995 * 18 17 15 41 41 H 1.09000 * 109.58265 * 65.15341 * 19 18 17 42 42 H 1.09001 * 109.58833 * 185.43157 * 19 18 17 43 43 H 1.09001 * 109.47019 * 89.99892 * 22 21 20 44 44 H 1.09003 * 109.46878 * 209.99834 * 22 21 20 45 45 H 1.08991 * 109.47491 * 329.99927 * 22 21 20 46 46 H 1.09000 * 109.58883 * 66.17471 * 24 20 19 47 47 H 1.08996 * 109.58590 * 186.45450 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4426 0.0006 5 7 4.0595 2.8228 -0.1150 6 6 3.8044 3.5770 1.1196 7 6 4.5818 2.9612 2.2542 8 1 5.2480 2.1324 2.0652 9 6 4.4426 3.4558 3.5337 10 7 5.1207 2.9181 4.5239 11 14 3.2909 4.8897 3.8605 12 1 1.9356 4.3733 4.1795 13 1 3.8011 5.6828 5.0077 14 1 3.2205 5.7530 2.6543 15 6 5.4869 2.8477 -0.4616 16 1 6.0584 2.3332 0.3108 17 6 5.9616 4.2988 -0.5671 18 6 7.4560 4.3255 -0.8957 19 6 7.6901 3.6408 -2.2460 20 7 7.1062 2.2934 -2.2005 21 6 7.8479 1.2127 -2.5142 22 6 9.2907 1.3798 -2.9159 23 8 7.3542 0.1057 -2.4732 24 6 5.6983 2.1465 -1.8071 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8932 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 1.6766 1.9564 0.8899 31 1 1.6765 1.9564 -0.8900 32 1 3.9336 0.8562 -0.8433 33 1 3.9329 1.0050 0.9305 34 1 4.1176 4.6122 0.9842 35 1 2.7395 3.5468 1.3502 36 1 5.0231 3.2663 5.4240 37 1 5.7893 4.8071 0.3816 38 1 5.4070 4.8059 -1.3566 39 1 7.7988 5.3589 -0.9476 40 1 8.0089 3.7969 -0.1191 41 1 7.2126 4.2196 -3.0367 42 1 8.7605 3.5712 -2.4397 43 1 9.9228 1.3297 -2.0293 44 1 9.5700 0.5842 -3.6067 45 1 9.4229 2.3462 -3.4022 46 1 5.0583 2.6033 -2.5620 47 1 5.4538 1.0885 -1.7125 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169614712.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:52 Heat of formation + Delta-G solvation = -66.084259 kcal Electronic energy + Delta-G solvation = -23845.060982 eV Core-core repulsion = 20640.361238 eV Total energy + Delta-G solvation = -3204.699744 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.30031 -39.54878 -37.55510 -35.65430 -34.56210 -33.34602 -32.10056 -30.36545 -30.08751 -27.78347 -26.27898 -24.53879 -24.02732 -22.58780 -21.55917 -20.89896 -20.07276 -18.84126 -18.24350 -17.08182 -16.62171 -16.47006 -16.42136 -16.01938 -15.68749 -15.30475 -15.11623 -14.60669 -14.50034 -14.24283 -14.12530 -13.92065 -13.55134 -13.42188 -13.27728 -13.10792 -12.99061 -12.82934 -12.49881 -12.39096 -12.24728 -11.99627 -11.89034 -11.82280 -11.76324 -11.65794 -11.52630 -11.31111 -11.08269 -10.83958 -10.77368 -9.64974 -9.04485 -8.32043 -6.36234 1.33684 1.33942 1.46190 1.59530 2.04069 2.31946 3.03531 3.20450 3.61215 3.93317 4.00678 4.03786 4.06914 4.10503 4.24480 4.30459 4.38218 4.45733 4.48025 4.54294 4.62662 4.70630 4.73334 4.79240 4.85081 4.86814 4.92479 4.97943 5.01137 5.07455 5.09334 5.13936 5.16336 5.17036 5.31295 5.33384 5.40698 5.46418 5.48407 5.52246 5.56453 6.09226 6.33814 6.39646 6.46768 6.69624 7.15456 7.29584 8.84922 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.012137 B = 0.006307 C = 0.004701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2306.432285 B = 4438.733780 C = 5955.157594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.122 4.122 3 C -0.101 4.101 4 C 0.057 3.943 5 N -0.517 5.517 6 C 0.162 3.838 7 C -0.539 4.539 8 H 0.023 0.977 9 C 0.011 3.989 10 N -0.951 5.951 11 Si 0.945 3.055 12 H -0.269 1.269 13 H -0.285 1.285 14 H -0.240 1.240 15 C 0.085 3.915 16 H 0.001 0.999 17 C -0.109 4.109 18 C -0.129 4.129 19 C 0.104 3.896 20 N -0.611 5.611 21 C 0.497 3.503 22 C -0.164 4.164 23 O -0.609 6.609 24 C 0.125 3.875 25 H 0.047 0.953 26 H 0.065 0.935 27 H 0.064 0.936 28 H 0.067 0.933 29 H 0.042 0.958 30 H 0.044 0.956 31 H 0.077 0.923 32 H 0.066 0.934 33 H 0.004 0.996 34 H 0.040 0.960 35 H 0.029 0.971 36 H 0.265 0.735 37 H 0.050 0.950 38 H 0.083 0.917 39 H 0.107 0.893 40 H 0.042 0.958 41 H 0.096 0.904 42 H 0.122 0.878 43 H 0.103 0.897 44 H 0.097 0.903 45 H 0.118 0.882 46 H 0.088 0.912 47 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.404 4.330 -16.755 17.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.160 4.160 3 C -0.139 4.139 4 C -0.071 4.071 5 N -0.240 5.240 6 C 0.035 3.965 7 C -0.577 4.577 8 H 0.041 0.959 9 C -0.187 4.187 10 N -0.591 5.591 11 Si 0.769 3.231 12 H -0.195 1.195 13 H -0.211 1.211 14 H -0.163 1.163 15 C -0.025 4.025 16 H 0.019 0.981 17 C -0.147 4.147 18 C -0.168 4.168 19 C -0.017 4.017 20 N -0.343 5.343 21 C 0.288 3.712 22 C -0.223 4.223 23 O -0.491 6.491 24 C 0.002 3.998 25 H 0.066 0.934 26 H 0.084 0.916 27 H 0.083 0.917 28 H 0.086 0.914 29 H 0.061 0.939 30 H 0.063 0.937 31 H 0.096 0.904 32 H 0.084 0.916 33 H 0.023 0.977 34 H 0.058 0.942 35 H 0.047 0.953 36 H 0.073 0.927 37 H 0.069 0.931 38 H 0.102 0.898 39 H 0.126 0.874 40 H 0.061 0.939 41 H 0.114 0.886 42 H 0.140 0.860 43 H 0.122 0.878 44 H 0.115 0.885 45 H 0.137 0.863 46 H 0.106 0.894 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 1.931 4.020 -16.960 17.537 hybrid contribution 0.097 -0.406 2.098 2.139 sum 2.028 3.614 -14.863 15.430 Atomic orbital electron populations 1.21709 0.94234 1.02138 1.02015 1.21478 0.97158 0.95978 1.01398 1.21458 0.93443 0.97155 1.01810 1.22058 0.96568 0.89962 0.98544 1.62537 1.14992 1.12945 1.33525 1.20081 0.95702 0.94621 0.86096 1.21791 1.25539 1.16761 0.93654 0.95909 1.25902 0.97266 0.99765 0.95738 1.70094 1.44089 1.43950 1.00985 0.85736 0.78938 0.79570 0.78901 1.19472 1.21052 1.16290 1.21671 0.88993 0.97488 0.94311 0.98126 1.21550 0.96730 0.94386 1.02005 1.21915 0.95157 1.02538 0.97172 1.22161 1.01181 0.80657 0.97655 1.48347 1.11413 1.08363 1.66186 1.21833 0.90622 0.83074 0.75658 1.21986 0.89001 1.06647 1.04644 1.90673 1.75115 1.27135 1.56180 1.21458 0.82406 1.00357 0.95589 0.93382 0.91627 0.91711 0.91406 0.93868 0.93736 0.90392 0.91573 0.97715 0.94197 0.95256 0.92659 0.93130 0.89821 0.87438 0.93902 0.88572 0.86021 0.87825 0.88463 0.86348 0.89422 0.92145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.49 9.91 71.98 0.71 -2.78 16 2 C -0.12 -3.66 5.93 30.60 0.18 -3.47 16 3 C -0.10 -3.51 5.14 30.60 0.16 -3.35 16 4 C 0.06 2.34 4.67 86.30 0.40 2.74 16 5 N -0.52 -21.25 4.55 -875.04 -3.98 -25.23 16 6 C 0.16 7.61 3.57 85.56 0.31 7.91 16 7 C -0.54 -30.78 8.03 25.60 0.21 -30.58 16 8 H 0.02 1.50 6.16 -2.91 -0.02 1.48 16 9 C 0.01 0.63 5.47 84.66 0.46 1.09 16 10 N -0.95 -60.08 13.96 21.45 0.30 -59.78 16 11 Si 0.95 43.75 27.40 68.60 1.88 45.63 16 12 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 13 H -0.28 -12.99 7.11 99.48 0.71 -12.29 16 14 H -0.24 -10.09 6.65 99.48 0.66 -9.43 16 15 C 0.09 3.30 1.70 44.99 0.08 3.37 16 16 H 0.00 0.03 6.57 -2.39 -0.02 0.02 16 17 C -0.11 -3.49 4.84 30.62 0.15 -3.34 16 18 C -0.13 -3.08 6.08 30.67 0.19 -2.89 16 19 C 0.10 1.89 6.21 86.36 0.54 2.43 16 20 N -0.61 -16.82 2.97 -818.93 -2.43 -19.25 16 21 C 0.50 14.53 7.81 87.66 0.68 15.21 16 22 C -0.16 -2.70 9.46 71.23 0.67 -2.02 16 23 O -0.61 -24.35 16.51 -3.03 -0.05 -24.40 16 24 C 0.13 4.19 5.37 86.36 0.46 4.65 16 25 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 26 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 27 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 28 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 29 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 30 H 0.04 1.71 6.84 -2.39 -0.02 1.69 16 31 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 32 H 0.07 2.56 5.80 -2.38 -0.01 2.55 16 33 H 0.00 0.22 6.53 -2.39 -0.02 0.21 16 34 H 0.04 1.82 5.49 -2.39 -0.01 1.81 16 35 H 0.03 1.37 5.84 -2.39 -0.01 1.36 16 36 H 0.26 15.64 8.31 -92.71 -0.77 14.87 16 37 H 0.05 1.93 6.26 -2.39 -0.01 1.91 16 38 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 39 H 0.11 1.88 8.14 -2.39 -0.02 1.86 16 40 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 41 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 42 H 0.12 1.34 5.53 -2.39 -0.01 1.32 16 43 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 44 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 45 H 0.12 1.06 6.19 -2.39 -0.01 1.04 16 46 H 0.09 2.61 8.14 -2.39 -0.02 2.59 16 47 H 0.06 2.36 5.30 -2.39 -0.01 2.35 16 Total: -1.00 -76.53 351.11 1.81 -74.72 By element: Atomic # 1 Polarization: 18.45 SS G_CDS: 0.89 Total: 19.34 kcal Atomic # 6 Polarization: -16.23 SS G_CDS: 5.20 Total: -11.03 kcal Atomic # 7 Polarization: -98.15 SS G_CDS: -6.11 Total: -104.26 kcal Atomic # 8 Polarization: -24.35 SS G_CDS: -0.05 Total: -24.40 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 1.88 Total: 45.63 kcal Total: -76.53 1.81 -74.72 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169614712.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.639 kcal (2) G-P(sol) polarization free energy of solvation -76.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.724 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds