Wall clock time and date at job start Tue Mar 31 2020 06:34:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47334 * 2 1 4 4 C 1.53002 * 109.47334 * 179.97438 * 3 2 1 5 5 N 1.46898 * 109.47367 * 179.97438 * 4 3 2 6 6 C 1.46890 * 111.00187 * 293.95587 * 5 4 3 7 7 C 1.50704 * 109.47126 * 164.46636 * 6 5 4 8 8 H 1.07993 * 119.99977 * 3.04190 * 7 6 5 9 9 C 1.37879 * 119.99673 * 183.04573 * 7 6 5 10 10 N 1.31517 * 120.00541 * 359.97438 * 9 7 6 11 11 Si 1.86805 * 119.99637 * 180.02562 * 9 7 6 12 12 H 1.48498 * 109.47077 * 359.97438 * 11 9 7 13 13 H 1.48494 * 109.47061 * 120.00023 * 11 9 7 14 14 H 1.48502 * 109.47081 * 239.99856 * 11 9 7 15 15 C 1.46898 * 111.00063 * 170.00097 * 5 4 3 16 16 H 1.08998 * 109.67301 * 170.11570 * 15 5 4 17 17 C 1.53344 * 109.67452 * 49.61436 * 15 5 4 18 18 C 1.52920 * 108.67476 * 172.73594 * 17 15 5 19 19 N 1.45754 * 110.49004 * 50.75668 * 18 17 15 20 20 C 1.46500 * 117.95016 * 160.92483 * 19 18 17 21 21 C 1.53000 * 109.47099 * 90.00126 * 20 19 18 22 22 C 1.33356 * 124.10202 * 340.89915 * 19 18 17 23 23 O 1.21284 * 118.24766 * 182.26491 * 22 19 18 24 24 C 1.50191 * 123.52236 * 2.23281 * 22 19 18 25 25 H 1.09005 * 109.46512 * 300.00141 * 1 2 3 26 26 H 1.08999 * 109.46761 * 59.99766 * 1 2 3 27 27 H 1.09000 * 109.46970 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47001 * 239.99417 * 2 1 3 29 29 H 1.09006 * 109.47163 * 120.00249 * 2 1 3 30 30 H 1.08998 * 109.47552 * 59.99754 * 3 2 1 31 31 H 1.08996 * 109.46903 * 299.99762 * 3 2 1 32 32 H 1.09007 * 109.47003 * 59.99683 * 4 3 2 33 33 H 1.09006 * 109.47163 * 300.00249 * 4 3 2 34 34 H 1.08996 * 109.47484 * 284.46620 * 6 5 4 35 35 H 1.09004 * 109.47642 * 44.46580 * 6 5 4 36 36 H 0.96997 * 119.99840 * 180.02562 * 10 9 7 37 37 H 1.09003 * 109.60597 * 292.49493 * 17 15 5 38 38 H 1.08999 * 109.60532 * 52.98103 * 17 15 5 39 39 H 1.09009 * 109.30117 * 171.06543 * 18 17 15 40 40 H 1.08997 * 109.30299 * 290.44419 * 18 17 15 41 41 H 1.08996 * 109.46741 * 210.00222 * 20 19 18 42 42 H 1.09003 * 109.46918 * 329.99867 * 20 19 18 43 43 H 1.08995 * 109.47100 * 180.02562 * 21 20 19 44 44 H 1.09004 * 109.46606 * 299.99652 * 21 20 19 45 45 H 1.08997 * 109.47430 * 59.99333 * 21 20 19 46 46 H 1.09001 * 109.42390 * 222.30971 * 24 22 19 47 47 H 1.09000 * 109.39527 * 102.55794 * 24 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5701 1.4424 0.0006 5 7 4.0598 2.8274 0.0000 6 6 3.7109 3.5086 -1.2537 7 6 3.8773 4.9963 -1.0802 8 1 4.2559 5.3924 -0.1496 9 6 3.5462 5.8517 -2.1097 10 7 3.0856 5.3693 -3.2432 11 14 3.7532 7.6958 -1.8949 12 1 4.2853 7.9794 -0.5379 13 1 4.7008 8.2097 -2.9161 14 1 2.4374 8.3641 -2.0598 15 6 5.5085 2.8736 0.2387 16 1 5.8776 3.8837 0.0613 17 6 6.2183 1.8921 -0.7016 18 6 7.7287 2.0878 -0.5644 19 7 8.1225 2.0517 0.8384 20 6 9.5308 1.7950 1.1499 21 6 10.2879 3.1226 1.2199 22 6 7.2812 2.2383 1.8562 23 8 7.7313 2.2270 2.9824 24 6 5.8063 2.4624 1.6828 25 1 -0.3632 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5139 -0.8899 29 1 1.8934 -0.5139 0.8900 30 1 1.6768 1.9564 0.8899 31 1 1.6768 1.9562 -0.8900 32 1 3.9338 0.9284 -0.8891 33 1 3.9331 0.9287 0.8909 34 1 4.3670 3.1602 -2.0513 35 1 2.6754 3.2865 -1.5120 36 1 2.8530 5.9711 -3.9675 37 1 5.9558 0.8698 -0.4291 38 1 5.9161 2.0878 -1.7304 39 1 8.2454 1.2941 -1.1042 40 1 8.0075 3.0508 -0.9922 41 1 9.6032 1.2843 2.1101 42 1 9.9667 1.1686 0.3715 43 1 11.3358 2.9316 1.4512 44 1 10.2154 3.6332 0.2596 45 1 9.8520 3.7490 1.9982 46 1 5.4775 3.2515 2.3591 47 1 5.2706 1.5419 1.9149 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172044585.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:57 Heat of formation + Delta-G solvation = -49.654904 kcal Electronic energy + Delta-G solvation = -23602.170644 eV Core-core repulsion = 20398.183330 eV Total energy + Delta-G solvation = -3203.987313 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.43891 -37.91787 -35.92858 -34.67105 -33.16205 -32.09832 -29.89971 -29.28644 -28.56923 -26.29261 -23.89836 -23.43173 -23.02289 -22.21905 -20.78806 -19.45727 -17.95064 -16.62326 -16.52982 -16.19824 -15.53225 -15.13174 -14.73158 -14.40330 -14.20635 -14.01632 -13.73380 -13.42172 -13.26159 -13.01692 -12.99948 -12.30820 -12.22266 -12.05227 -12.01638 -11.62427 -11.57649 -11.43921 -11.11824 -10.98143 -10.83222 -10.72610 -10.67263 -10.61811 -10.41964 -10.16912 -10.09663 -9.76042 -9.37955 -9.17764 -8.61547 -8.44912 -7.28341 -6.06146 -4.06693 2.86913 3.15811 3.28560 3.36965 3.41942 4.38479 4.60032 4.80189 4.98257 5.09501 5.16012 5.22001 5.24511 5.26702 5.30212 5.38671 5.42284 5.47954 5.57844 5.62274 5.67322 5.77142 5.81855 5.93780 5.98828 6.02446 6.04505 6.08913 6.16526 6.18583 6.19834 6.26187 6.36634 6.45287 6.56770 6.61186 6.71387 6.82420 7.22322 7.30538 7.62113 7.78313 8.07152 8.14347 8.36925 8.50189 9.01248 9.57730 11.04314 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.009865 B = 0.006475 C = 0.004322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2837.539970 B = 4323.171757 C = 6476.538690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.122 4.122 3 C -0.117 4.117 4 C 0.053 3.947 5 N -0.527 5.527 6 C 0.189 3.811 7 C -0.504 4.504 8 H 0.062 0.938 9 C 0.056 3.944 10 N -0.899 5.899 11 Si 0.893 3.107 12 H -0.272 1.272 13 H -0.286 1.286 14 H -0.284 1.284 15 C 0.093 3.907 16 H 0.098 0.902 17 C -0.167 4.167 18 C 0.119 3.881 19 N -0.604 5.604 20 C 0.104 3.896 21 C -0.166 4.166 22 C 0.522 3.478 23 O -0.564 6.564 24 C -0.126 4.126 25 H 0.053 0.947 26 H 0.054 0.946 27 H 0.047 0.953 28 H 0.056 0.944 29 H 0.055 0.945 30 H 0.066 0.934 31 H 0.071 0.929 32 H 0.024 0.976 33 H 0.058 0.942 34 H -0.007 1.007 35 H 0.039 0.961 36 H 0.260 0.740 37 H 0.065 0.935 38 H 0.090 0.910 39 H 0.069 0.931 40 H 0.067 0.933 41 H 0.082 0.918 42 H 0.072 0.928 43 H 0.061 0.939 44 H 0.056 0.944 45 H 0.060 0.940 46 H 0.103 0.897 47 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.320 -10.237 4.110 12.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.160 4.160 3 C -0.155 4.155 4 C -0.075 4.075 5 N -0.250 5.250 6 C 0.064 3.936 7 C -0.543 4.543 8 H 0.081 0.919 9 C -0.145 4.145 10 N -0.538 5.538 11 Si 0.721 3.279 12 H -0.197 1.197 13 H -0.212 1.212 14 H -0.210 1.210 15 C -0.017 4.017 16 H 0.116 0.884 17 C -0.207 4.207 18 C -0.004 4.004 19 N -0.337 5.337 20 C -0.019 4.019 21 C -0.224 4.224 22 C 0.312 3.688 23 O -0.444 6.444 24 C -0.166 4.166 25 H 0.072 0.928 26 H 0.073 0.927 27 H 0.066 0.934 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.085 0.915 31 H 0.089 0.911 32 H 0.043 0.957 33 H 0.076 0.924 34 H 0.010 0.990 35 H 0.057 0.943 36 H 0.070 0.930 37 H 0.084 0.916 38 H 0.109 0.891 39 H 0.088 0.912 40 H 0.086 0.914 41 H 0.101 0.899 42 H 0.090 0.910 43 H 0.080 0.920 44 H 0.075 0.925 45 H 0.079 0.921 46 H 0.121 0.879 47 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 6.205 -9.917 4.888 12.678 hybrid contribution 0.447 0.626 -0.909 1.191 sum 6.652 -9.291 3.979 12.100 Atomic orbital electron populations 1.21754 0.96193 1.00841 1.01990 1.21494 0.95633 0.97630 1.01222 1.21637 0.95145 0.95379 1.03334 1.22087 0.95310 0.91092 0.99025 1.62257 1.10156 1.12934 1.39662 1.19831 0.96525 0.93546 0.83659 1.21201 1.42579 0.90869 0.99662 0.91938 1.24953 0.95413 0.98869 0.95227 1.69955 1.44711 1.34875 1.04294 0.86516 0.77748 0.85492 0.78143 1.19656 1.21181 1.21035 1.21681 0.89315 0.99559 0.91159 0.88377 1.22599 0.93754 1.00967 1.03335 1.21370 0.96360 1.01946 0.80724 1.47433 1.08709 1.70796 1.06754 1.21440 0.80786 0.97469 1.02156 1.22089 0.99848 0.98089 1.02405 1.20345 0.89304 0.75206 0.83985 1.90660 1.78022 1.52037 1.23645 1.21766 0.90532 1.04417 0.99903 0.92829 0.92654 0.93386 0.92549 0.92624 0.91519 0.91062 0.95747 0.92371 0.98960 0.94315 0.93019 0.91591 0.89134 0.91239 0.91430 0.89936 0.90967 0.91960 0.92532 0.92082 0.87856 0.88639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.78 9.91 37.16 0.37 -1.41 16 2 C -0.12 -1.57 5.93 -26.73 -0.16 -1.73 16 3 C -0.12 -1.87 5.18 -26.73 -0.14 -2.01 16 4 C 0.05 0.87 3.81 -3.82 -0.01 0.85 16 5 N -0.53 -10.25 4.39 -227.83 -1.00 -11.25 16 6 C 0.19 4.50 4.52 -4.98 -0.02 4.48 16 7 C -0.50 -13.41 8.45 -34.44 -0.29 -13.70 16 8 H 0.06 1.68 7.50 -52.49 -0.39 1.28 16 9 C 0.06 1.54 5.46 -17.82 -0.10 1.44 16 10 N -0.90 -25.64 13.29 55.43 0.74 -24.90 16 11 Si 0.89 21.15 29.54 -169.99 -5.02 16.13 16 12 H -0.27 -6.39 7.11 56.52 0.40 -5.98 16 13 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 14 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 15 C 0.09 1.60 2.13 -67.50 -0.14 1.46 16 16 H 0.10 1.95 6.99 -51.93 -0.36 1.59 16 17 C -0.17 -2.46 4.30 -26.59 -0.11 -2.57 16 18 C 0.12 1.52 6.39 -4.49 -0.03 1.49 16 19 N -0.60 -8.39 2.81 -174.95 -0.49 -8.88 16 20 C 0.10 1.23 5.92 -4.04 -0.02 1.21 16 21 C -0.17 -1.87 10.23 37.16 0.38 -1.49 16 22 C 0.52 8.56 7.46 -11.86 -0.09 8.47 16 23 O -0.56 -10.79 16.21 5.55 0.09 -10.70 16 24 C -0.13 -2.02 5.51 -28.09 -0.15 -2.17 16 25 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 31 H 0.07 1.31 6.29 -51.93 -0.33 0.98 16 32 H 0.02 0.40 7.01 -51.93 -0.36 0.04 16 33 H 0.06 0.86 6.13 -51.93 -0.32 0.54 16 34 H -0.01 -0.18 6.45 -51.93 -0.34 -0.52 16 35 H 0.04 1.00 5.95 -51.93 -0.31 0.69 16 36 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 37 H 0.07 0.91 7.03 -51.93 -0.36 0.54 16 38 H 0.09 1.47 6.56 -51.93 -0.34 1.13 16 39 H 0.07 0.72 7.92 -51.92 -0.41 0.31 16 40 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.08 1.06 7.21 -51.93 -0.37 0.69 16 42 H 0.07 0.67 7.86 -51.93 -0.41 0.26 16 43 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 45 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 46 H 0.10 1.73 8.14 -51.93 -0.42 1.31 16 47 H 0.10 1.43 6.17 -51.93 -0.32 1.11 16 LS Contribution 359.67 15.07 5.42 5.42 Total: -1.00 -29.66 359.67 -9.21 -38.87 By element: Atomic # 1 Polarization: 9.40 SS G_CDS: -8.41 Total: 0.98 kcal Atomic # 6 Polarization: -5.15 SS G_CDS: -0.53 Total: -5.68 kcal Atomic # 7 Polarization: -44.28 SS G_CDS: -0.75 Total: -45.03 kcal Atomic # 8 Polarization: -10.79 SS G_CDS: 0.09 Total: -10.70 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -29.66 -9.21 -38.87 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172044585.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.787 kcal (2) G-P(sol) polarization free energy of solvation -29.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds