Wall clock time and date at job start Tue Mar 31 2020 06:35:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.46596 * 2 1 4 4 C 1.53001 * 109.46800 * 179.97438 * 3 2 1 5 5 N 1.46898 * 109.47175 * 180.02562 * 4 3 2 6 6 C 1.46896 * 111.00191 * 66.04808 * 5 4 3 7 7 C 1.50697 * 109.47629 * 199.37563 * 6 5 4 8 8 H 1.08012 * 119.99694 * 0.02562 * 7 6 5 9 9 C 1.37875 * 120.00419 * 179.97438 * 7 6 5 10 10 N 1.31513 * 120.00013 * 359.97438 * 9 7 6 11 11 Si 1.86799 * 120.00027 * 180.02562 * 9 7 6 12 12 H 1.48501 * 109.47221 * 90.00220 * 11 9 7 13 13 H 1.48498 * 109.46942 * 209.99814 * 11 9 7 14 14 H 1.48503 * 109.47357 * 329.99901 * 11 9 7 15 15 C 1.46903 * 111.00113 * 190.00098 * 5 4 3 16 16 H 1.09000 * 109.67316 * 190.67134 * 15 5 4 17 17 C 1.53342 * 109.67464 * 311.17303 * 15 5 4 18 18 C 1.52976 * 108.65207 * 187.24486 * 17 15 5 19 19 N 1.45762 * 110.51645 * 309.30898 * 18 17 15 20 20 C 1.46496 * 117.94569 * 199.05352 * 19 18 17 21 21 C 1.52999 * 109.47163 * 269.97599 * 20 19 18 22 22 C 1.33350 * 124.10612 * 19.02761 * 19 18 17 23 23 O 1.21279 * 118.24582 * 177.82130 * 22 19 18 24 24 C 1.50178 * 123.50842 * 357.80413 * 22 19 18 25 25 H 1.09002 * 109.47094 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47353 * 299.99577 * 1 2 3 27 27 H 1.09005 * 109.47321 * 60.00188 * 1 2 3 28 28 H 1.08999 * 109.46836 * 240.00344 * 2 1 3 29 29 H 1.09002 * 109.46842 * 119.99962 * 2 1 3 30 30 H 1.08999 * 109.47247 * 60.00596 * 3 2 1 31 31 H 1.08999 * 109.47795 * 299.99984 * 3 2 1 32 32 H 1.09000 * 109.46991 * 60.00520 * 4 3 2 33 33 H 1.09002 * 109.47673 * 300.00521 * 4 3 2 34 34 H 1.09002 * 109.47200 * 319.37852 * 6 5 4 35 35 H 1.09001 * 109.47313 * 79.37726 * 6 5 4 36 36 H 0.96998 * 120.00292 * 180.02562 * 10 9 7 37 37 H 1.08997 * 109.60191 * 307.05514 * 17 15 5 38 38 H 1.08997 * 109.60520 * 67.54110 * 17 15 5 39 39 H 1.09001 * 109.30644 * 188.97386 * 18 17 15 40 40 H 1.09001 * 109.09767 * 69.50832 * 18 17 15 41 41 H 1.08997 * 109.47502 * 29.97613 * 20 19 18 42 42 H 1.08995 * 109.47042 * 149.97935 * 20 19 18 43 43 H 1.08999 * 109.47507 * 180.02562 * 21 20 19 44 44 H 1.09006 * 109.47117 * 300.00366 * 21 20 19 45 45 H 1.09003 * 109.47260 * 59.99749 * 21 20 19 46 46 H 1.09001 * 109.39865 * 257.45197 * 24 22 19 47 47 H 1.08997 * 109.40263 * 137.71397 * 24 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4426 0.0006 5 7 4.0595 2.8276 0.0013 6 6 3.7096 3.5091 1.2546 7 6 3.7849 5.0007 1.0534 8 1 4.0644 5.4023 0.0905 9 6 3.4961 5.8528 2.0981 10 7 3.1543 5.3639 3.2702 11 14 3.5888 7.7017 1.8484 12 1 2.2673 8.2072 1.3975 13 1 3.9583 8.3562 3.1292 14 1 4.6145 8.0115 0.8202 15 6 5.5085 2.8738 -0.2363 16 1 5.8797 3.8808 -0.0454 17 6 6.2158 1.8784 0.6912 18 6 7.7271 2.0729 0.5564 19 7 8.1212 2.0560 -0.8469 20 6 9.5290 1.8012 -1.1616 21 6 10.2884 3.1284 -1.2131 22 6 7.2804 2.2575 -1.8621 23 8 7.7305 2.2600 -2.9883 24 6 5.8059 2.4812 -1.6856 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.6766 1.9563 0.8900 31 1 1.6766 1.9564 -0.8899 32 1 3.9336 0.9287 -0.8892 33 1 3.9330 0.9288 0.8908 34 1 2.6968 3.2328 1.5480 35 1 4.4082 3.2123 2.0369 36 1 2.9507 5.9633 4.0051 37 1 5.9131 2.0608 1.7223 38 1 5.9517 0.8604 0.4047 39 1 8.2423 1.2708 1.0849 40 1 8.0041 3.0307 0.9968 41 1 9.9638 1.1635 -0.3919 42 1 9.6008 1.3038 -2.1288 43 1 11.3359 2.9389 -1.4477 44 1 9.8537 3.7661 -1.9828 45 1 10.2166 3.6259 -0.2459 46 1 5.2688 1.5647 -1.9299 47 1 5.4785 3.2796 -2.3515 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172044601.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:01 Heat of formation + Delta-G solvation = -49.602597 kcal Electronic energy + Delta-G solvation = -23590.885017 eV Core-core repulsion = 20386.899972 eV Total energy + Delta-G solvation = -3203.985045 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.44086 -37.91694 -35.93039 -34.66967 -33.16370 -32.09589 -29.90404 -29.28546 -28.56150 -26.30253 -23.89221 -23.42865 -23.03698 -22.20315 -20.78668 -19.45768 -17.94621 -16.61579 -16.54793 -16.18229 -15.55046 -15.12862 -14.73198 -14.41253 -14.21176 -14.02283 -13.73487 -13.41843 -13.26040 -13.01995 -12.99824 -12.30693 -12.21901 -12.04654 -12.01620 -11.61865 -11.56977 -11.44080 -11.11441 -10.98174 -10.82869 -10.72360 -10.69008 -10.60790 -10.42042 -10.17929 -10.07407 -9.76409 -9.37930 -9.21633 -8.61863 -8.43038 -7.28687 -6.05110 -4.05783 2.86796 3.15493 3.30573 3.37125 3.40902 4.38716 4.60099 4.79723 4.97768 5.08825 5.15866 5.21807 5.24582 5.26446 5.30626 5.38490 5.42280 5.47627 5.57748 5.62085 5.67124 5.76988 5.81376 5.93690 5.98589 6.02399 6.03828 6.08689 6.16102 6.18497 6.19724 6.25966 6.36490 6.45111 6.56335 6.60438 6.71063 6.82739 7.20599 7.31263 7.61822 7.79828 8.08503 8.13757 8.36720 8.50661 9.02285 9.58646 11.05121 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.009941 B = 0.006395 C = 0.004317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2815.860529 B = 4377.680518 C = 6484.996046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.122 4.122 3 C -0.117 4.117 4 C 0.054 3.946 5 N -0.528 5.528 6 C 0.189 3.811 7 C -0.504 4.504 8 H 0.062 0.938 9 C 0.056 3.944 10 N -0.899 5.899 11 Si 0.894 3.106 12 H -0.280 1.280 13 H -0.288 1.288 14 H -0.274 1.274 15 C 0.093 3.907 16 H 0.097 0.903 17 C -0.167 4.167 18 C 0.119 3.881 19 N -0.604 5.604 20 C 0.104 3.896 21 C -0.166 4.166 22 C 0.522 3.478 23 O -0.564 6.564 24 C -0.126 4.126 25 H 0.047 0.953 26 H 0.054 0.946 27 H 0.053 0.947 28 H 0.055 0.945 29 H 0.056 0.944 30 H 0.071 0.929 31 H 0.066 0.934 32 H 0.058 0.942 33 H 0.024 0.976 34 H 0.036 0.964 35 H -0.004 1.004 36 H 0.261 0.739 37 H 0.090 0.910 38 H 0.066 0.934 39 H 0.070 0.930 40 H 0.067 0.933 41 H 0.072 0.928 42 H 0.082 0.918 43 H 0.061 0.939 44 H 0.060 0.940 45 H 0.056 0.944 46 H 0.096 0.904 47 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.300 -10.302 -4.137 12.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.160 4.160 3 C -0.155 4.155 4 C -0.075 4.075 5 N -0.250 5.250 6 C 0.064 3.936 7 C -0.543 4.543 8 H 0.080 0.920 9 C -0.145 4.145 10 N -0.539 5.539 11 Si 0.722 3.278 12 H -0.207 1.207 13 H -0.214 1.214 14 H -0.199 1.199 15 C -0.017 4.017 16 H 0.115 0.885 17 C -0.207 4.207 18 C -0.004 4.004 19 N -0.337 5.337 20 C -0.018 4.018 21 C -0.224 4.224 22 C 0.312 3.688 23 O -0.443 6.443 24 C -0.166 4.166 25 H 0.066 0.934 26 H 0.073 0.927 27 H 0.072 0.928 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.090 0.910 31 H 0.085 0.915 32 H 0.076 0.924 33 H 0.043 0.957 34 H 0.054 0.946 35 H 0.013 0.987 36 H 0.070 0.930 37 H 0.108 0.892 38 H 0.084 0.916 39 H 0.088 0.912 40 H 0.086 0.914 41 H 0.090 0.910 42 H 0.101 0.899 43 H 0.080 0.920 44 H 0.079 0.921 45 H 0.075 0.925 46 H 0.114 0.886 47 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 6.199 -9.976 -4.906 12.729 hybrid contribution 0.390 0.630 0.878 1.149 sum 6.589 -9.346 -4.028 12.124 Atomic orbital electron populations 1.21754 0.96195 1.00838 1.01991 1.21495 0.95632 0.97636 1.01216 1.21643 0.95138 0.95361 1.03358 1.22082 0.95314 0.91075 0.99004 1.62253 1.10077 1.12928 1.39762 1.19833 0.96271 0.93662 0.83801 1.21174 1.45547 0.90612 0.96947 0.91960 1.24954 0.95522 0.98868 0.95146 1.69945 1.47204 1.34939 1.01828 0.86562 0.78461 0.85435 0.77355 1.20660 1.21403 1.19880 1.21675 0.89330 0.99419 0.91262 0.88484 1.22616 0.93779 1.00975 1.03303 1.21383 0.96352 1.01934 0.80751 1.47431 1.08753 1.70706 1.06809 1.21438 0.80784 0.97457 1.02170 1.22090 0.99843 0.98105 1.02396 1.20343 0.89300 0.75208 0.83990 1.90659 1.77993 1.52091 1.23604 1.21753 0.90522 1.04477 0.99813 0.93391 0.92658 0.92828 0.92625 0.92551 0.91045 0.91507 0.92395 0.95749 0.94583 0.98661 0.92983 0.89170 0.91555 0.91190 0.91442 0.90966 0.89931 0.91956 0.92088 0.92529 0.88638 0.87846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.78 9.91 37.16 0.37 -1.41 16 2 C -0.12 -1.57 5.93 -26.73 -0.16 -1.72 16 3 C -0.12 -1.87 5.19 -26.73 -0.14 -2.01 16 4 C 0.05 0.87 3.78 -3.82 -0.01 0.86 16 5 N -0.53 -10.24 4.35 -227.83 -0.99 -11.23 16 6 C 0.19 4.50 4.52 -4.98 -0.02 4.48 16 7 C -0.50 -13.44 8.52 -34.44 -0.29 -13.73 16 8 H 0.06 1.68 7.80 -52.48 -0.41 1.27 16 9 C 0.06 1.53 5.46 -17.82 -0.10 1.44 16 10 N -0.90 -25.68 13.29 55.43 0.74 -24.94 16 11 Si 0.89 21.21 29.54 -169.99 -5.02 16.19 16 12 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 13 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 14 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 15 C 0.09 1.61 2.14 -67.50 -0.14 1.46 16 16 H 0.10 1.93 7.34 -51.93 -0.38 1.55 16 17 C -0.17 -2.45 4.28 -26.57 -0.11 -2.56 16 18 C 0.12 1.51 6.39 -4.45 -0.03 1.48 16 19 N -0.60 -8.38 2.81 -174.93 -0.49 -8.87 16 20 C 0.10 1.23 5.92 -4.04 -0.02 1.20 16 21 C -0.17 -1.87 10.23 37.16 0.38 -1.49 16 22 C 0.52 8.55 7.46 -11.87 -0.09 8.46 16 23 O -0.56 -10.78 16.21 5.56 0.09 -10.69 16 24 C -0.13 -2.01 5.52 -28.10 -0.16 -2.16 16 25 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.07 1.31 6.25 -51.93 -0.32 0.99 16 31 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 32 H 0.06 0.86 6.18 -51.93 -0.32 0.54 16 33 H 0.02 0.40 7.01 -51.93 -0.36 0.03 16 34 H 0.04 0.93 5.88 -51.93 -0.31 0.62 16 35 H 0.00 -0.11 6.45 -51.93 -0.34 -0.44 16 36 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 37 H 0.09 1.46 6.60 -51.93 -0.34 1.11 16 38 H 0.07 0.91 7.03 -51.93 -0.36 0.54 16 39 H 0.07 0.72 7.92 -51.93 -0.41 0.31 16 40 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 41 H 0.07 0.67 7.86 -51.93 -0.41 0.26 16 42 H 0.08 1.06 7.20 -51.93 -0.37 0.69 16 43 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 45 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 46 H 0.10 1.43 6.21 -51.93 -0.32 1.11 16 47 H 0.10 1.73 8.14 -51.93 -0.42 1.31 16 LS Contribution 360.36 15.07 5.43 5.43 Total: -1.00 -29.68 360.36 -9.23 -38.91 By element: Atomic # 1 Polarization: 9.35 SS G_CDS: -8.45 Total: 0.91 kcal Atomic # 6 Polarization: -5.18 SS G_CDS: -0.53 Total: -5.71 kcal Atomic # 7 Polarization: -44.30 SS G_CDS: -0.75 Total: -45.04 kcal Atomic # 8 Polarization: -10.78 SS G_CDS: 0.09 Total: -10.69 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -29.68 -9.23 -38.91 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172044601.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.692 kcal (2) G-P(sol) polarization free energy of solvation -29.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.910 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds