Wall clock time and date at job start Tue Mar 31 2020 06:37:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.46487 * 2 1 4 4 C 1.53008 * 109.46686 * 188.21376 * 3 2 1 5 5 N 1.46499 * 109.47037 * 244.47705 * 4 3 2 6 6 C 1.36933 * 120.00460 * 337.69962 * 5 4 3 7 7 H 1.08005 * 119.99481 * 45.53622 * 6 5 4 8 8 C 1.38809 * 120.00254 * 225.54207 * 6 5 4 9 9 N 1.31614 * 120.00149 * 17.34047 * 8 6 5 10 10 Si 1.86805 * 119.99817 * 197.34788 * 8 6 5 11 11 H 1.48498 * 109.47198 * 94.99385 * 10 8 6 12 12 H 1.48503 * 109.46857 * 214.99238 * 10 8 6 13 13 H 1.48498 * 109.47069 * 334.99048 * 10 8 6 14 14 C 1.46507 * 119.99721 * 157.70355 * 5 4 3 15 15 C 1.53113 * 109.51885 * 326.49498 * 14 5 4 16 16 C 1.53035 * 109.27477 * 297.71253 * 15 14 5 17 17 H 1.09000 * 109.48966 * 180.66669 * 16 15 14 18 18 C 1.53060 * 109.44267 * 60.60109 * 16 15 14 19 19 O 1.43024 * 109.28743 * 296.58061 * 18 16 15 20 20 C 1.43020 * 113.74348 * 301.21750 * 19 18 16 21 21 C 1.53063 * 109.26262 * 58.79857 * 20 19 18 22 22 H 1.09001 * 109.52717 * 183.37750 * 21 20 19 23 23 C 1.53033 * 109.44678 * 63.34153 * 21 20 19 24 24 N 1.46931 * 109.47474 * 300.69666 * 16 15 14 25 25 C 1.46898 * 110.99758 * 297.97030 * 24 16 15 26 26 H 1.09000 * 109.47242 * 299.99741 * 1 2 3 27 27 H 1.09001 * 109.47330 * 60.00147 * 1 2 3 28 28 H 1.09005 * 109.46638 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47242 * 240.00259 * 2 1 3 30 30 H 1.09001 * 109.47330 * 119.99853 * 2 1 3 31 31 H 1.09000 * 109.47160 * 68.22386 * 3 2 1 32 32 H 1.08995 * 109.47644 * 308.21528 * 3 2 1 33 33 H 1.08999 * 109.46602 * 124.47397 * 4 3 2 34 34 H 1.08998 * 109.47216 * 4.47861 * 4 3 2 35 35 H 0.96999 * 120.00603 * 184.98616 * 9 8 6 36 36 H 1.09004 * 109.57033 * 86.64877 * 14 5 4 37 37 H 1.08998 * 109.50857 * 57.65813 * 15 14 5 38 38 H 1.09004 * 109.50603 * 177.77482 * 15 14 5 39 39 H 1.08997 * 109.50278 * 56.56727 * 18 16 15 40 40 H 1.08997 * 109.50294 * 176.67706 * 18 16 15 41 41 H 1.08995 * 109.50651 * 298.85922 * 20 19 18 42 42 H 1.09005 * 109.50773 * 178.73153 * 20 19 18 43 43 H 1.09003 * 109.50068 * 179.41624 * 23 21 20 44 44 H 1.08998 * 109.50517 * 59.33778 * 23 21 20 45 45 H 1.08992 * 109.47504 * 59.99783 * 25 24 16 46 46 H 1.08996 * 109.47288 * 180.02562 * 25 24 16 47 47 H 1.09009 * 109.47074 * 299.99632 * 25 24 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5560 1.4475 -0.2061 5 7 4.2096 1.9842 0.9901 6 6 3.5103 2.7882 1.8501 7 1 2.5116 2.5128 2.1553 8 6 4.0850 3.9573 2.3296 9 7 5.1311 4.4742 1.7208 10 14 3.3735 4.7968 3.8391 11 1 4.1161 4.3556 5.0471 12 1 3.4985 6.2692 3.6916 13 1 1.9405 4.4332 3.9786 14 6 5.6116 1.6608 1.2662 15 6 5.9167 0.2441 0.7720 16 6 5.0495 -0.7563 1.5396 17 1 5.2724 -1.7674 1.1988 18 6 3.5716 -0.4463 1.2896 19 8 3.2659 0.8498 1.8114 20 6 3.5230 0.9820 3.2121 21 6 5.0006 0.6891 3.4841 22 1 5.1886 0.7299 4.5570 23 6 5.8659 1.7329 2.7743 24 7 5.3343 -0.6497 2.9771 25 6 6.7355 -0.9862 3.2624 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 1.8015 1.9122 0.9543 32 1 1.5616 1.9970 -0.8074 33 1 3.8037 2.0701 -1.0659 34 1 3.9019 0.4292 -0.3832 35 1 5.5770 5.2494 2.0965 36 1 6.2584 2.3727 0.7532 37 1 5.6962 0.1747 -0.2932 38 1 6.9695 0.0182 0.9417 39 1 3.3722 -0.4642 0.2182 40 1 2.9538 -1.1935 1.7878 41 1 2.9042 0.2746 3.7641 42 1 3.2886 1.9976 3.5310 43 1 6.9180 1.5313 2.9759 44 1 5.6095 2.7273 3.1394 45 1 7.3905 -0.3010 2.7246 46 1 6.9191 -0.8997 4.3333 47 1 6.9364 -2.0083 2.9412 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172138511.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:52 Heat of formation + Delta-G solvation = 211.557416 kcal Electronic energy + Delta-G solvation = -27202.259178 eV Core-core repulsion = 24009.598881 eV Total energy + Delta-G solvation = -3192.660297 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.45690 -36.96018 -34.77355 -34.12400 -32.42230 -30.84784 -30.41985 -27.88287 -26.97777 -25.66860 -24.70518 -23.61283 -22.36465 -21.43686 -20.56858 -19.47101 -17.80441 -16.45322 -15.93147 -15.56785 -15.17362 -14.93361 -14.10941 -14.08183 -13.81232 -13.70265 -13.36201 -13.08803 -12.63294 -12.36120 -12.04427 -11.95496 -11.79295 -11.49636 -11.26342 -11.05438 -10.95316 -10.83247 -10.63689 -10.53262 -10.39707 -10.16707 -9.94945 -9.85328 -9.77295 -9.38239 -9.24726 -8.93385 -8.82637 -8.31782 -7.86581 -7.39110 -5.94050 -4.94591 -3.15245 3.31392 3.40914 3.43433 4.45066 4.63626 5.17191 5.27051 5.42711 5.57063 5.61630 5.66415 5.77416 5.82440 5.86633 5.88489 5.94880 6.02676 6.16372 6.19158 6.24449 6.27790 6.30797 6.35518 6.41917 6.48024 6.50028 6.54632 6.60788 6.65670 6.83508 6.87400 6.89976 6.92174 6.94015 7.01849 7.25354 7.33421 7.37710 7.56751 7.57961 7.81338 7.88650 7.94372 8.47450 8.68835 9.25221 9.78281 10.41336 11.24165 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.014245 B = 0.012324 C = 0.008432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1965.087075 B = 2271.371444 C = 3319.758887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.151 4.151 3 C -0.123 4.123 4 C 0.136 3.864 5 N -0.476 5.476 6 C -0.231 4.231 7 H 0.080 0.920 8 C 0.007 3.993 9 N -0.883 5.883 10 Si 0.869 3.131 11 H -0.284 1.284 12 H -0.290 1.290 13 H -0.273 1.273 14 C 0.196 3.804 15 C -0.164 4.164 16 C 0.061 3.939 17 H 0.061 0.939 18 C -0.021 4.021 19 O -0.250 6.250 20 C 0.034 3.966 21 C 0.068 3.932 22 H 0.060 0.940 23 C -0.139 4.139 24 N -0.530 5.530 25 C 0.021 3.979 26 H 0.050 0.950 27 H 0.043 0.957 28 H 0.040 0.960 29 H 0.043 0.957 30 H 0.097 0.903 31 H 0.106 0.894 32 H 0.031 0.969 33 H -0.007 1.007 34 H 0.055 0.945 35 H 0.251 0.749 36 H 0.041 0.959 37 H 0.058 0.942 38 H 0.050 0.950 39 H 0.114 0.886 40 H 0.020 0.980 41 H 0.002 0.998 42 H 0.108 0.892 43 H 0.032 0.968 44 H 0.097 0.903 45 H 0.030 0.970 46 H 0.056 0.944 47 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.026 -8.980 -0.403 9.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.188 4.188 3 C -0.160 4.160 4 C 0.013 3.987 5 N -0.205 5.205 6 C -0.359 4.359 7 H 0.097 0.903 8 C -0.193 4.193 9 N -0.526 5.526 10 Si 0.698 3.302 11 H -0.211 1.211 12 H -0.216 1.216 13 H -0.198 1.198 14 C 0.091 3.909 15 C -0.204 4.204 16 C -0.048 4.048 17 H 0.079 0.921 18 C -0.099 4.099 19 O -0.161 6.161 20 C -0.045 4.045 21 C -0.040 4.040 22 H 0.078 0.922 23 C -0.178 4.178 24 N -0.254 5.254 25 C -0.127 4.127 26 H 0.069 0.931 27 H 0.062 0.938 28 H 0.059 0.941 29 H 0.061 0.939 30 H 0.115 0.885 31 H 0.124 0.876 32 H 0.050 0.950 33 H 0.010 0.990 34 H 0.072 0.928 35 H 0.061 0.939 36 H 0.058 0.942 37 H 0.077 0.923 38 H 0.068 0.932 39 H 0.131 0.869 40 H 0.038 0.962 41 H 0.020 0.980 42 H 0.126 0.874 43 H 0.051 0.949 44 H 0.115 0.885 45 H 0.049 0.951 46 H 0.075 0.925 47 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -1.367 -8.977 -0.294 9.085 hybrid contribution 0.638 0.777 0.642 1.193 sum -0.729 -8.199 0.348 8.239 Atomic orbital electron populations 1.21798 0.97691 1.00032 1.01094 1.22599 0.94472 0.99401 1.02327 1.22109 0.95602 0.94957 1.03357 1.21602 0.92282 0.96516 0.88344 1.43912 1.05803 1.49902 1.20865 1.18864 1.00573 0.95898 1.20582 0.90344 1.25404 0.98916 0.94828 1.00168 1.70139 1.22797 1.22832 1.36794 0.86772 0.79631 0.79533 0.84306 1.21097 1.21629 1.19781 1.20076 0.86971 0.90419 0.93462 1.22572 0.98643 0.99011 1.00135 1.22232 0.98515 0.96814 0.87214 0.92122 1.24180 0.91410 0.93258 1.01094 1.92424 1.90556 1.16488 1.16681 1.23042 0.91483 1.00711 0.89279 1.22087 0.98626 0.86350 0.96948 0.92179 1.22265 0.96177 1.01979 0.97428 1.62569 1.19704 1.28165 1.14923 1.22337 0.90283 0.99653 1.00457 0.93061 0.93830 0.94075 0.93869 0.88474 0.87571 0.95015 0.98971 0.92750 0.93902 0.94176 0.92331 0.93162 0.86936 0.96237 0.97999 0.87392 0.94945 0.88483 0.95118 0.92513 0.92719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.10 9.90 37.16 0.37 -1.74 16 2 C -0.15 -2.37 4.36 -26.73 -0.12 -2.49 16 3 C -0.12 -2.29 4.59 -26.73 -0.12 -2.41 16 4 C 0.14 2.75 5.06 -4.04 -0.02 2.73 16 5 N -0.48 -10.64 1.49 -184.82 -0.28 -10.92 16 6 C -0.23 -5.52 3.78 -15.06 -0.06 -5.58 16 7 H 0.08 1.90 4.10 -52.48 -0.22 1.69 16 8 C 0.01 0.17 3.09 -17.43 -0.05 0.12 16 9 N -0.88 -23.99 11.80 55.49 0.65 -23.33 16 10 Si 0.87 20.02 28.19 -169.99 -4.79 15.23 16 11 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 12 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 13 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 14 C 0.20 4.30 2.53 -67.81 -0.17 4.13 16 15 C -0.16 -3.03 4.64 -26.65 -0.12 -3.15 16 16 C 0.06 1.08 2.99 -67.65 -0.20 0.88 16 17 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 18 C -0.02 -0.38 2.93 37.19 0.11 -0.27 16 19 O -0.25 -4.99 1.42 -31.74 -0.05 -5.04 16 20 C 0.03 0.70 5.07 37.19 0.19 0.88 16 21 C 0.07 1.36 2.99 -67.61 -0.20 1.15 16 22 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 23 C -0.14 -2.99 4.57 -26.66 -0.12 -3.12 16 24 N -0.53 -9.61 4.92 -226.68 -1.12 -10.73 16 25 C 0.02 0.34 8.86 60.06 0.53 0.87 16 26 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.04 0.52 8.14 -51.93 -0.42 0.09 16 29 H 0.04 0.63 7.67 -51.93 -0.40 0.23 16 30 H 0.10 1.60 3.51 -66.13 -0.23 1.37 16 31 H 0.11 2.24 4.31 -51.93 -0.22 2.01 16 32 H 0.03 0.58 8.13 -51.93 -0.42 0.16 16 33 H -0.01 -0.16 8.14 -51.93 -0.42 -0.59 16 34 H 0.06 1.02 2.82 -51.93 -0.15 0.87 16 35 H 0.25 6.72 8.32 -40.82 -0.34 6.38 16 36 H 0.04 1.03 7.77 -51.93 -0.40 0.62 16 37 H 0.06 1.05 6.60 -51.93 -0.34 0.71 16 38 H 0.05 0.89 6.48 -51.93 -0.34 0.55 16 39 H 0.11 1.90 2.58 -51.93 -0.13 1.77 16 40 H 0.02 0.36 7.17 -51.93 -0.37 -0.02 16 41 H 0.00 0.04 8.14 -51.93 -0.42 -0.38 16 42 H 0.11 2.40 3.85 -51.93 -0.20 2.20 16 43 H 0.03 0.66 6.58 -51.93 -0.34 0.32 16 44 H 0.10 2.36 4.72 -51.93 -0.24 2.12 16 45 H 0.03 0.50 4.90 -51.93 -0.25 0.25 16 46 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 47 H 0.05 0.77 8.14 -51.92 -0.42 0.35 16 LS Contribution 297.30 15.07 4.48 4.48 Total: -1.00 -25.48 297.30 -8.30 -33.78 By element: Atomic # 1 Polarization: 11.73 SS G_CDS: -7.21 Total: 4.52 kcal Atomic # 6 Polarization: -7.99 SS G_CDS: 0.01 Total: -7.99 kcal Atomic # 7 Polarization: -44.24 SS G_CDS: -0.74 Total: -44.98 kcal Atomic # 8 Polarization: -4.99 SS G_CDS: -0.05 Total: -5.04 kcal Atomic # 14 Polarization: 20.02 SS G_CDS: -4.79 Total: 15.23 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -25.48 -8.30 -33.78 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172138511.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 245.333 kcal (2) G-P(sol) polarization free energy of solvation -25.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 219.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.775 kcal (6) G-S(sol) free energy of system = (1) + (5) 211.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds