Wall clock time and date at job start Tue Mar 31 2020 05:28:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46626 * 2 1 4 4 C 1.52997 * 109.47127 * 240.00461 * 2 1 3 5 5 C 1.53000 * 109.47060 * 294.99938 * 4 2 1 6 6 H 1.08997 * 109.47436 * 54.99714 * 5 4 2 7 7 N 1.46902 * 109.46958 * 294.99980 * 5 4 2 8 8 C 1.46897 * 111.00018 * 155.00242 * 7 5 4 9 9 C 1.53007 * 109.46897 * 274.99881 * 8 7 5 10 10 C 1.53003 * 109.46822 * 180.02562 * 9 8 7 11 11 C 1.52994 * 109.47440 * 60.00146 * 10 9 8 12 12 C 1.50699 * 109.47394 * 179.97438 * 11 10 9 13 13 H 1.07997 * 120.00214 * 119.99453 * 12 11 10 14 14 C 1.37881 * 119.99669 * 299.99913 * 12 11 10 15 15 N 1.31519 * 120.00206 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 119.99847 * 179.97438 * 14 12 11 17 17 H 1.48502 * 109.46938 * 60.00258 * 16 14 12 18 18 H 1.48497 * 109.47030 * 179.97438 * 16 14 12 19 19 H 1.48498 * 109.47319 * 300.00185 * 16 14 12 20 20 C 1.53007 * 109.46994 * 299.99748 * 11 10 9 21 21 C 1.52994 * 109.47279 * 155.00081 * 8 7 5 22 22 C 1.50698 * 109.47104 * 175.00228 * 5 4 2 23 23 N 1.34776 * 120.00030 * 299.99567 * 22 5 4 24 24 O 1.21285 * 120.00227 * 120.00029 * 22 5 4 25 25 H 1.09001 * 109.46801 * 59.99811 * 1 2 3 26 26 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47050 * 299.99699 * 1 2 3 28 28 H 1.08993 * 109.46955 * 120.00472 * 2 1 3 29 29 H 1.09000 * 109.47160 * 60.00369 * 3 2 1 30 30 H 1.09002 * 109.46719 * 180.02562 * 3 2 1 31 31 H 1.08993 * 109.47839 * 299.99931 * 3 2 1 32 32 H 1.09006 * 109.47500 * 54.99635 * 4 2 1 33 33 H 1.09000 * 109.47325 * 174.99723 * 4 2 1 34 34 H 1.00902 * 110.99990 * 31.04349 * 7 5 4 35 35 H 1.09003 * 109.47422 * 34.99916 * 8 7 5 36 36 H 1.08999 * 109.47030 * 299.99730 * 9 8 7 37 37 H 1.08998 * 109.46779 * 59.99991 * 9 8 7 38 38 H 1.08999 * 109.46975 * 299.99613 * 10 9 8 39 39 H 1.08999 * 109.46821 * 180.02562 * 10 9 8 40 40 H 1.09003 * 109.47028 * 59.99600 * 11 10 9 41 41 H 0.96998 * 119.99946 * 179.97438 * 15 14 12 42 42 H 1.08999 * 109.47030 * 300.00294 * 20 11 10 43 43 H 1.08998 * 109.46779 * 180.02562 * 20 11 10 44 44 H 1.08999 * 109.47108 * 299.99811 * 21 8 7 45 45 H 1.08999 * 109.47472 * 59.99764 * 21 8 7 46 46 H 0.97001 * 120.00233 * 0.02562 * 23 22 5 47 47 H 0.97006 * 120.00201 * 180.02562 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7211 -1.2493 5 6 1.6353 -2.1954 -1.1881 6 1 0.5564 -2.2707 -1.0528 7 7 2.3167 -2.8438 -0.0597 8 6 1.5642 -4.0161 0.4064 9 6 0.4877 -3.5700 1.3979 10 6 -0.2957 -4.7912 1.8838 11 6 0.6588 -5.7683 2.5729 12 6 -0.1128 -6.9708 3.0520 13 1 0.1390 -7.9551 2.6858 14 6 -1.1404 -6.8143 3.9579 15 7 -1.4475 -5.6156 4.4034 16 14 -2.0975 -8.3048 4.5513 17 1 -1.1712 -9.2536 5.2199 18 1 -3.1414 -7.8714 5.5143 19 1 -2.7400 -8.9742 3.3919 20 6 1.7354 -6.2145 1.5813 21 6 2.5183 -4.9937 1.0953 22 6 2.0294 -2.8782 -2.4724 23 7 1.5235 -2.4502 -3.6460 24 8 2.8019 -3.8130 -2.4499 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5139 0.8899 29 1 1.6766 1.9563 0.8900 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9564 -0.8899 32 1 1.6054 -0.2616 -2.1370 33 1 3.1264 -0.6442 -1.2952 34 1 2.4709 -2.1902 0.6935 35 1 1.0929 -4.5074 -0.4449 36 1 0.9590 -3.0788 2.2492 37 1 -0.1921 -2.8735 0.9071 38 1 -0.7669 -5.2827 1.0327 39 1 -1.0628 -4.4733 2.5898 40 1 1.1301 -5.2767 3.4240 41 1 -2.1707 -5.5055 5.0404 42 1 1.2641 -6.7060 0.7302 43 1 2.4151 -6.9110 2.0722 44 1 3.2852 -5.3116 0.3889 45 1 2.9896 -4.5026 1.9466 46 1 0.9060 -1.7023 -3.6640 47 1 1.7770 -2.8899 -4.4726 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173330084.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:56 Heat of formation + Delta-G solvation = -75.573578 kcal Electronic energy + Delta-G solvation = -23701.771335 eV Core-core repulsion = 20496.660103 eV Total energy + Delta-G solvation = -3205.111231 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.93905 -37.91660 -36.83928 -34.13659 -33.57547 -32.21891 -29.88281 -29.50982 -27.36725 -27.14953 -24.60238 -23.96202 -21.50574 -20.61487 -20.46640 -19.68549 -18.68136 -17.36293 -16.77827 -16.26174 -15.93591 -14.89635 -14.67901 -14.55034 -14.38818 -14.01445 -13.59152 -13.27623 -13.00972 -12.84181 -12.57340 -12.53883 -12.35304 -12.01393 -11.89157 -11.53813 -11.15032 -11.12366 -10.93564 -10.88655 -10.76727 -10.69886 -10.39359 -10.20563 -10.04669 -9.91192 -9.68022 -9.62294 -9.29582 -8.89456 -8.61682 -8.26764 -7.91279 -5.92240 -3.97725 2.78449 3.35307 3.39349 3.42861 3.47585 4.36564 4.49149 4.58060 4.65893 4.73019 5.07402 5.09622 5.26364 5.36416 5.41075 5.44838 5.51467 5.56569 5.67088 5.69868 5.81306 5.83066 5.99397 6.02695 6.15403 6.17828 6.27835 6.36598 6.45074 6.52276 6.71056 6.78811 6.81351 6.94453 7.02175 7.18647 7.27557 7.32392 7.48148 7.58933 7.70710 7.81410 8.10499 8.21786 8.40791 8.55452 9.06498 9.66409 11.13124 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.020267 B = 0.004322 C = 0.003879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1381.227906 B = 6476.879353 C = 7216.395695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.100 4.100 3 C -0.145 4.145 4 C -0.111 4.111 5 C 0.068 3.932 6 H 0.074 0.926 7 N -0.665 5.665 8 C 0.097 3.903 9 C -0.144 4.144 10 C -0.104 4.104 11 C 0.049 3.951 12 C -0.511 4.511 13 H 0.053 0.947 14 C 0.061 3.939 15 N -0.892 5.892 16 Si 0.888 3.112 17 H -0.278 1.278 18 H -0.288 1.288 19 H -0.278 1.278 20 C -0.108 4.108 21 C -0.098 4.098 22 C 0.517 3.483 23 N -0.865 5.865 24 O -0.516 6.516 25 H 0.053 0.947 26 H 0.060 0.940 27 H 0.057 0.943 28 H 0.076 0.924 29 H 0.056 0.944 30 H 0.055 0.945 31 H 0.053 0.947 32 H 0.070 0.930 33 H 0.076 0.924 34 H 0.344 0.656 35 H 0.067 0.933 36 H 0.054 0.946 37 H 0.037 0.963 38 H 0.030 0.970 39 H 0.090 0.910 40 H 0.024 0.976 41 H 0.258 0.742 42 H 0.045 0.955 43 H 0.047 0.953 44 H 0.055 0.945 45 H 0.051 0.949 46 H 0.396 0.604 47 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.760 14.819 -12.667 19.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.119 4.119 3 C -0.202 4.202 4 C -0.149 4.149 5 C -0.046 4.046 6 H 0.092 0.908 7 N -0.298 5.298 8 C -0.012 4.012 9 C -0.183 4.183 10 C -0.143 4.143 11 C 0.031 3.969 12 C -0.549 4.549 13 H 0.071 0.929 14 C -0.140 4.140 15 N -0.532 5.532 16 Si 0.716 3.284 17 H -0.203 1.203 18 H -0.214 1.214 19 H -0.204 1.204 20 C -0.147 4.147 21 C -0.136 4.136 22 C 0.300 3.700 23 N -0.430 5.430 24 O -0.388 6.388 25 H 0.072 0.928 26 H 0.079 0.921 27 H 0.076 0.924 28 H 0.094 0.906 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.072 0.928 32 H 0.088 0.912 33 H 0.095 0.905 34 H 0.165 0.835 35 H 0.085 0.915 36 H 0.072 0.928 37 H 0.056 0.944 38 H 0.049 0.951 39 H 0.109 0.891 40 H 0.042 0.958 41 H 0.068 0.932 42 H 0.063 0.937 43 H 0.066 0.934 44 H 0.073 0.927 45 H 0.070 0.930 46 H 0.224 0.776 47 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges 4.600 13.941 -12.704 19.414 hybrid contribution -1.666 -0.153 0.390 1.718 sum 2.934 13.788 -12.314 18.717 Atomic orbital electron populations 1.21969 0.94954 1.02347 1.01855 1.21169 0.96187 0.96358 0.98186 1.21808 1.01007 0.95647 1.01754 1.21777 1.02308 0.92241 0.98618 1.21469 0.98438 0.93413 0.91275 0.90833 1.60312 1.49536 1.10064 1.09875 1.21623 0.92798 0.90266 0.96525 1.22347 0.97835 0.99902 0.98182 1.21539 0.99893 0.93694 0.99184 1.18646 0.91474 0.94250 0.92561 1.21245 1.15885 0.93445 1.24324 0.92890 1.24959 0.97199 0.95574 0.96259 1.69869 1.30320 1.21080 1.31921 0.86725 0.79711 0.83399 0.78548 1.20344 1.21401 1.20394 1.21619 0.98124 0.95620 0.99301 1.21426 0.97369 0.96068 0.98749 1.20794 0.80162 0.83639 0.85360 1.43942 1.51309 1.38600 1.09169 1.90743 1.33609 1.27690 1.86796 0.92759 0.92101 0.92370 0.90623 0.92519 0.92597 0.92813 0.91158 0.90486 0.83499 0.91480 0.92767 0.94402 0.95072 0.89149 0.95793 0.93166 0.93657 0.93441 0.92651 0.93007 0.77575 0.77213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 8.96 37.16 0.33 -1.06 16 2 C -0.10 -0.89 2.82 -90.62 -0.26 -1.14 16 3 C -0.14 -1.09 9.19 37.16 0.34 -0.75 16 4 C -0.11 -1.01 4.22 -26.73 -0.11 -1.12 16 5 C 0.07 0.83 2.14 -68.86 -0.15 0.68 16 6 H 0.07 0.90 5.33 -51.93 -0.28 0.62 16 7 N -0.67 -9.94 5.59 -100.96 -0.56 -10.50 16 8 C 0.10 1.73 2.11 -67.71 -0.14 1.59 16 9 C -0.14 -2.69 5.16 -26.73 -0.14 -2.83 16 10 C -0.10 -2.45 4.98 -26.73 -0.13 -2.59 16 11 C 0.05 1.24 2.10 -91.77 -0.19 1.05 16 12 C -0.51 -14.30 8.56 -34.44 -0.29 -14.59 16 13 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 14 C 0.06 1.69 5.30 -17.82 -0.09 1.60 16 15 N -0.89 -25.57 11.32 55.43 0.63 -24.94 16 16 Si 0.89 21.57 29.54 -169.99 -5.02 16.55 16 17 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 18 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 19 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 20 C -0.11 -2.40 5.14 -26.75 -0.14 -2.54 16 21 C -0.10 -1.91 5.53 -26.76 -0.15 -2.05 16 22 C 0.52 7.02 7.18 -10.99 -0.08 6.94 16 23 N -0.86 -7.58 8.74 31.22 0.27 -7.31 16 24 O -0.52 -9.56 17.10 5.55 0.09 -9.47 16 25 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 26 H 0.06 0.64 5.21 -51.93 -0.27 0.37 16 27 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.08 0.76 6.29 -51.93 -0.33 0.44 16 29 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 32 H 0.07 0.49 7.43 -51.93 -0.39 0.10 16 33 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 34 H 0.34 4.72 6.16 -39.29 -0.24 4.48 16 35 H 0.07 1.31 7.64 -51.93 -0.40 0.92 16 36 H 0.05 1.03 8.13 -51.93 -0.42 0.61 16 37 H 0.04 0.64 6.18 -51.93 -0.32 0.32 16 38 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 39 H 0.09 2.37 6.07 -51.93 -0.32 2.06 16 40 H 0.02 0.66 8.14 -51.93 -0.42 0.23 16 41 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 42 H 0.04 1.01 8.14 -51.93 -0.42 0.59 16 43 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 44 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 45 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 46 H 0.40 2.24 8.19 -40.82 -0.33 1.91 16 47 H 0.40 3.11 8.93 -40.82 -0.36 2.74 16 LS Contribution 356.28 15.07 5.37 5.37 Total: -1.00 -31.83 356.28 -8.69 -40.52 By element: Atomic # 1 Polarization: 14.85 SS G_CDS: -8.27 Total: 6.58 kcal Atomic # 6 Polarization: -15.61 SS G_CDS: -1.20 Total: -16.81 kcal Atomic # 7 Polarization: -43.09 SS G_CDS: 0.34 Total: -42.75 kcal Atomic # 8 Polarization: -9.56 SS G_CDS: 0.09 Total: -9.47 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -31.83 -8.69 -40.52 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173330084.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.052 kcal (2) G-P(sol) polarization free energy of solvation -31.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds