Wall clock time and date at job start Tue Mar 31 2020 05:29:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 109.47029 * 2 1 4 4 C 1.53004 * 109.47203 * 119.99636 * 2 1 3 5 5 C 1.52998 * 109.47086 * 64.99878 * 4 2 1 6 6 H 1.09002 * 109.47491 * 305.00418 * 5 4 2 7 7 N 1.46906 * 109.46854 * 65.00215 * 5 4 2 8 8 C 1.46898 * 110.99961 * 204.99713 * 7 5 4 9 9 C 1.53006 * 109.47006 * 84.99970 * 8 7 5 10 10 C 1.52997 * 109.47127 * 179.97438 * 9 8 7 11 11 C 1.53000 * 109.47060 * 300.00449 * 10 9 8 12 12 C 1.50703 * 109.46912 * 179.97438 * 11 10 9 13 13 H 1.08001 * 119.99776 * 0.02562 * 12 11 10 14 14 C 1.37877 * 120.00001 * 179.97438 * 12 11 10 15 15 N 1.31512 * 119.99923 * 179.97438 * 14 12 11 16 16 Si 1.86804 * 120.00006 * 0.02562 * 14 12 11 17 17 H 1.48497 * 109.46794 * 89.99626 * 16 14 12 18 18 H 1.48502 * 109.47140 * 209.99610 * 16 14 12 19 19 H 1.48501 * 109.46982 * 329.99723 * 16 14 12 20 20 C 1.52996 * 109.47328 * 60.00126 * 11 10 9 21 21 C 1.52997 * 109.47123 * 204.99951 * 8 7 5 22 22 C 1.50697 * 109.47063 * 185.00219 * 5 4 2 23 23 N 1.34769 * 120.00162 * 60.00446 * 22 5 4 24 24 O 1.21282 * 119.99918 * 240.00413 * 22 5 4 25 25 H 1.08998 * 109.47027 * 300.00162 * 1 2 3 26 26 H 1.09003 * 109.46741 * 60.00535 * 1 2 3 27 27 H 1.09004 * 109.46596 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47444 * 239.99511 * 2 1 3 29 29 H 1.08998 * 109.47200 * 179.97438 * 3 2 1 30 30 H 1.08998 * 109.46676 * 299.99788 * 3 2 1 31 31 H 1.08996 * 109.47407 * 59.99488 * 3 2 1 32 32 H 1.09007 * 109.46812 * 305.00580 * 4 2 1 33 33 H 1.08999 * 109.47365 * 185.00616 * 4 2 1 34 34 H 1.00893 * 110.99825 * 328.95386 * 7 5 4 35 35 H 1.09001 * 109.47062 * 325.00224 * 8 7 5 36 36 H 1.08998 * 109.46505 * 59.99663 * 9 8 7 37 37 H 1.08996 * 109.46884 * 300.00544 * 9 8 7 38 38 H 1.09002 * 109.47153 * 180.02562 * 10 9 8 39 39 H 1.09001 * 109.46832 * 60.00321 * 10 9 8 40 40 H 1.09001 * 109.47194 * 299.99650 * 11 10 9 41 41 H 0.97000 * 119.99684 * 179.97438 * 15 14 12 42 42 H 1.08992 * 109.47554 * 59.99639 * 20 11 10 43 43 H 1.09004 * 109.47108 * 179.97438 * 20 11 10 44 44 H 1.09002 * 109.47045 * 60.00157 * 21 8 7 45 45 H 1.09001 * 109.47375 * 300.00082 * 21 8 7 46 46 H 0.97000 * 120.00290 * 359.97438 * 23 22 5 47 47 H 0.97001 * 120.00335 * 180.02562 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2493 5 6 1.6353 -2.1954 1.1881 6 1 0.5563 -2.2707 1.0528 7 7 2.3167 -2.8438 0.0597 8 6 1.5642 -4.0162 -0.4064 9 6 0.4876 -3.5700 -1.3979 10 6 -0.2957 -4.7911 -1.8838 11 6 0.6589 -5.7683 -2.5728 12 6 -0.1126 -6.9714 -3.0508 13 1 -1.1774 -7.0326 -2.8806 14 6 0.5406 -7.9934 -3.7064 15 7 -0.1326 -9.0435 -4.1231 16 14 2.3822 -7.8871 -4.0014 17 1 3.1030 -8.4957 -2.8546 18 1 2.7269 -8.6183 -5.2471 19 1 2.7804 -6.4630 -4.1369 20 6 1.7353 -6.2145 -1.5813 21 6 2.5184 -4.9938 -1.0952 22 6 2.0294 -2.8782 2.4724 23 7 1.5234 -2.4502 3.6460 24 8 2.8018 -3.8129 2.4500 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5139 -0.8899 29 1 3.1300 1.4426 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6766 1.9564 0.8899 32 1 1.6053 -0.2616 2.1370 33 1 3.1264 -0.6442 1.2953 34 1 2.4709 -2.1903 -0.6934 35 1 1.0929 -4.5074 0.4450 36 1 0.9590 -3.0788 -2.2491 37 1 -0.1921 -2.8735 -0.9071 38 1 -1.0623 -4.4734 -2.5905 39 1 -0.7670 -5.2827 -1.0326 40 1 1.1301 -5.2768 -3.4239 41 1 0.3270 -9.7623 -4.5847 42 1 1.2641 -6.7060 -0.7302 43 1 2.4151 -6.9110 -2.0720 44 1 3.2853 -5.3116 -0.3889 45 1 2.9896 -4.5026 -1.9466 46 1 0.9059 -1.7023 3.6640 47 1 1.7774 -2.8894 4.4727 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173330085.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:00 Heat of formation + Delta-G solvation = -67.301592 kcal Electronic energy + Delta-G solvation = -23760.789071 eV Core-core repulsion = 20556.036540 eV Total energy + Delta-G solvation = -3204.752531 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.06934 -38.15768 -37.02577 -34.29619 -33.65860 -32.23518 -30.19085 -30.05086 -27.56653 -27.42756 -24.68902 -23.80902 -22.05286 -20.61563 -20.53170 -19.82084 -18.93164 -17.46508 -16.91453 -16.55736 -16.16136 -15.16828 -14.86918 -14.76758 -14.33242 -14.00873 -13.69277 -13.52293 -13.21847 -12.98625 -12.86286 -12.63884 -12.55315 -12.41989 -11.97058 -11.80984 -11.55686 -11.38642 -11.14254 -11.00622 -10.87000 -10.75849 -10.43794 -10.37499 -10.06374 -9.81740 -9.73388 -9.70239 -9.47990 -8.95758 -8.83315 -8.45283 -8.12400 -5.99987 -3.98331 2.69737 3.36296 3.38126 3.45529 3.48425 4.21463 4.46204 4.49361 4.53610 4.59954 4.93182 4.98809 5.11249 5.24572 5.29506 5.33030 5.34593 5.41346 5.44023 5.55657 5.65859 5.68873 5.72712 5.87416 5.96207 6.02476 6.02970 6.15872 6.21670 6.26894 6.33985 6.49636 6.61560 6.69611 6.74945 6.78910 7.02217 7.08897 7.16212 7.32232 7.38911 7.54633 7.66546 7.87372 8.32778 8.60563 9.04066 9.63732 11.13482 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.021577 B = 0.004483 C = 0.004153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1297.394644 B = 6244.924581 C = 6739.999799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.100 4.100 3 C -0.145 4.145 4 C -0.112 4.112 5 C 0.068 3.932 6 H 0.074 0.926 7 N -0.664 5.664 8 C 0.098 3.902 9 C -0.147 4.147 10 C -0.093 4.093 11 C 0.014 3.986 12 C -0.512 4.512 13 H 0.071 0.929 14 C 0.068 3.932 15 N -0.905 5.905 16 Si 0.888 3.112 17 H -0.279 1.279 18 H -0.300 1.300 19 H -0.265 1.265 20 C -0.119 4.119 21 C -0.104 4.104 22 C 0.516 3.484 23 N -0.864 5.864 24 O -0.514 6.514 25 H 0.055 0.945 26 H 0.057 0.943 27 H 0.059 0.941 28 H 0.075 0.925 29 H 0.055 0.945 30 H 0.056 0.944 31 H 0.054 0.946 32 H 0.071 0.929 33 H 0.077 0.923 34 H 0.344 0.656 35 H 0.072 0.928 36 H 0.058 0.942 37 H 0.046 0.954 38 H 0.053 0.947 39 H 0.052 0.948 40 H 0.025 0.975 41 H 0.262 0.738 42 H 0.057 0.943 43 H 0.046 0.954 44 H 0.060 0.940 45 H 0.052 0.948 46 H 0.396 0.604 47 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.393 21.875 12.870 25.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.119 4.119 3 C -0.203 4.203 4 C -0.150 4.150 5 C -0.046 4.046 6 H 0.092 0.908 7 N -0.297 5.297 8 C -0.011 4.011 9 C -0.187 4.187 10 C -0.132 4.132 11 C -0.005 4.005 12 C -0.550 4.550 13 H 0.089 0.911 14 C -0.133 4.133 15 N -0.544 5.544 16 Si 0.719 3.281 17 H -0.206 1.206 18 H -0.228 1.228 19 H -0.190 1.190 20 C -0.157 4.157 21 C -0.142 4.142 22 C 0.299 3.701 23 N -0.430 5.430 24 O -0.386 6.386 25 H 0.074 0.926 26 H 0.076 0.924 27 H 0.078 0.922 28 H 0.093 0.907 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.073 0.927 32 H 0.090 0.910 33 H 0.096 0.904 34 H 0.166 0.834 35 H 0.091 0.909 36 H 0.077 0.923 37 H 0.065 0.935 38 H 0.071 0.929 39 H 0.071 0.929 40 H 0.043 0.957 41 H 0.072 0.928 42 H 0.076 0.924 43 H 0.064 0.936 44 H 0.078 0.922 45 H 0.070 0.930 46 H 0.224 0.776 47 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges 3.368 20.740 12.943 24.678 hybrid contribution -0.031 0.459 -0.226 0.513 sum 3.337 21.199 12.716 24.945 Atomic orbital electron populations 1.21972 0.94987 1.02197 1.01960 1.21174 0.96132 0.96448 0.98155 1.21811 1.01091 0.95565 1.01804 1.21786 1.02442 0.92144 0.98655 1.21484 0.98339 0.93486 0.91280 0.90818 1.60271 1.49501 1.09996 1.09916 1.21583 0.92588 0.90438 0.96494 1.22355 0.98245 0.99090 0.98965 1.21362 0.97922 0.94325 0.99565 1.19151 0.92926 0.95041 0.93341 1.21096 0.96208 1.01598 1.36097 0.91072 1.25026 0.98063 0.95150 0.95050 1.69909 1.36135 1.08535 1.39782 0.86829 0.86333 0.78470 0.76487 1.20578 1.22784 1.18987 1.21947 0.98039 0.95676 0.99990 1.21498 0.97651 0.96045 0.98984 1.20756 0.80281 0.83690 0.85356 1.43933 1.51257 1.38597 1.09183 1.90761 1.33496 1.27621 1.86761 0.92630 0.92393 0.92221 0.90711 0.92542 0.92516 0.92737 0.91032 0.90398 0.83425 0.90936 0.92342 0.93518 0.92858 0.92919 0.95720 0.92804 0.92398 0.93574 0.92153 0.92961 0.77580 0.77114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 8.96 37.16 0.33 -0.77 16 2 C -0.10 -0.74 2.82 -90.61 -0.26 -0.99 16 3 C -0.15 -0.92 9.19 37.16 0.34 -0.58 16 4 C -0.11 -0.88 4.22 -26.73 -0.11 -0.99 16 5 C 0.07 0.74 2.14 -68.86 -0.15 0.59 16 6 H 0.07 0.76 5.33 -51.93 -0.28 0.49 16 7 N -0.66 -9.06 5.59 -100.95 -0.56 -9.63 16 8 C 0.10 1.60 2.11 -67.71 -0.14 1.46 16 9 C -0.15 -2.31 5.16 -26.73 -0.14 -2.45 16 10 C -0.09 -1.85 5.14 -26.73 -0.14 -1.98 16 11 C 0.01 0.34 1.69 -91.77 -0.16 0.18 16 12 C -0.51 -14.64 9.14 -34.44 -0.31 -14.96 16 13 H 0.07 2.19 7.99 -52.49 -0.42 1.77 16 14 C 0.07 2.01 5.45 -17.82 -0.10 1.91 16 15 N -0.90 -28.36 13.96 55.43 0.77 -27.59 16 16 Si 0.89 22.83 24.37 -169.99 -4.14 18.69 16 17 H -0.28 -7.07 6.87 56.52 0.39 -6.68 16 18 H -0.30 -7.71 7.11 56.52 0.40 -7.31 16 19 H -0.26 -6.52 6.53 56.52 0.37 -6.15 16 20 C -0.12 -2.68 4.68 -26.76 -0.13 -2.81 16 21 C -0.10 -1.99 5.53 -26.76 -0.15 -2.14 16 22 C 0.52 6.53 7.17 -10.99 -0.08 6.45 16 23 N -0.86 -6.87 8.73 31.22 0.27 -6.60 16 24 O -0.51 -9.21 17.10 5.56 0.10 -9.11 16 25 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 26 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 27 H 0.06 0.49 5.21 -51.93 -0.27 0.22 16 28 H 0.07 0.63 6.29 -51.93 -0.33 0.30 16 29 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 32 H 0.07 0.42 7.43 -51.93 -0.39 0.03 16 33 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.34 4.19 6.15 -39.30 -0.24 3.95 16 35 H 0.07 1.30 7.64 -51.93 -0.40 0.90 16 36 H 0.06 0.90 8.13 -51.93 -0.42 0.47 16 37 H 0.05 0.62 6.18 -51.93 -0.32 0.30 16 38 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 39 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 40 H 0.02 0.60 7.20 -51.93 -0.37 0.23 16 41 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 42 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 43 H 0.05 1.12 3.27 -51.93 -0.17 0.95 16 44 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 45 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 46 H 0.40 1.87 8.19 -40.82 -0.33 1.54 16 47 H 0.40 2.87 8.93 -40.82 -0.36 2.51 16 LS Contribution 349.46 15.07 5.27 5.27 Total: -1.00 -34.11 349.46 -7.61 -41.73 By element: Atomic # 1 Polarization: 12.45 SS G_CDS: -8.13 Total: 4.32 kcal Atomic # 6 Polarization: -15.90 SS G_CDS: -1.18 Total: -17.08 kcal Atomic # 7 Polarization: -44.29 SS G_CDS: 0.48 Total: -43.81 kcal Atomic # 8 Polarization: -9.21 SS G_CDS: 0.10 Total: -9.11 kcal Atomic # 14 Polarization: 22.83 SS G_CDS: -4.14 Total: 18.69 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -34.11 -7.61 -41.73 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173330085.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.575 kcal (2) G-P(sol) polarization free energy of solvation -34.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds