Wall clock time and date at job start Tue Mar 31 2020 06:42:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.47088 * 2 1 4 4 C 1.52996 * 109.47464 * 120.00808 * 2 1 3 5 5 N 1.46498 * 109.47745 * 64.99370 * 4 2 1 6 6 C 1.34770 * 120.00370 * 180.02562 * 5 4 2 7 7 O 1.21286 * 120.00018 * 359.97438 * 6 5 4 8 8 C 1.50701 * 120.00166 * 180.02562 * 6 5 4 9 9 N 1.46893 * 109.47153 * 180.02562 * 8 6 5 10 10 C 1.46905 * 111.00246 * 179.97438 * 9 8 6 11 11 C 1.52995 * 109.47500 * 204.99866 * 10 9 8 12 12 C 1.53000 * 109.47200 * 179.97438 * 11 10 9 13 13 C 1.53001 * 109.46989 * 60.00030 * 12 11 10 14 14 C 1.50694 * 109.47168 * 59.99989 * 13 12 11 15 15 H 1.08000 * 120.00563 * 359.97438 * 14 13 12 16 16 C 1.37885 * 119.99902 * 179.97438 * 14 13 12 17 17 N 1.31518 * 119.99792 * 179.72330 * 16 14 13 18 18 Si 1.86795 * 120.00009 * 0.02562 * 16 14 13 19 19 H 1.48501 * 109.47088 * 89.99795 * 18 16 14 20 20 H 1.48495 * 109.47293 * 209.99997 * 18 16 14 21 21 H 1.48507 * 109.47015 * 329.99955 * 18 16 14 22 22 C 1.53000 * 109.47124 * 299.99675 * 13 12 11 23 23 C 1.53000 * 109.46922 * 60.00284 * 22 13 12 24 24 H 1.08997 * 109.47705 * 59.99293 * 1 2 3 25 25 H 1.09003 * 109.47592 * 179.97438 * 1 2 3 26 26 H 1.09006 * 109.46903 * 299.99647 * 1 2 3 27 27 H 1.09006 * 109.46903 * 240.00353 * 2 1 3 28 28 H 1.09000 * 109.46854 * 180.02562 * 3 2 1 29 29 H 1.08995 * 109.47361 * 300.00331 * 3 2 1 30 30 H 1.08998 * 109.47021 * 60.00707 * 3 2 1 31 31 H 1.09008 * 109.46634 * 304.99371 * 4 2 1 32 32 H 1.08995 * 109.47191 * 185.00293 * 4 2 1 33 33 H 0.96999 * 119.99731 * 0.02562 * 5 4 2 34 34 H 1.08994 * 109.47327 * 59.99822 * 8 6 5 35 35 H 1.09002 * 109.46995 * 299.99795 * 8 6 5 36 36 H 1.00900 * 111.00244 * 303.94758 * 9 8 6 37 37 H 1.08998 * 109.46545 * 324.99920 * 10 9 8 38 38 H 1.08995 * 109.47132 * 59.99890 * 11 10 9 39 39 H 1.09007 * 109.46935 * 300.00130 * 11 10 9 40 40 H 1.08998 * 109.46768 * 300.00007 * 12 11 10 41 41 H 1.09000 * 109.47156 * 180.02562 * 12 11 10 42 42 H 1.09002 * 109.46926 * 179.97438 * 13 12 11 43 43 H 0.97000 * 119.99468 * 179.97438 * 17 16 14 44 44 H 1.08995 * 109.47131 * 180.02562 * 22 13 12 45 45 H 1.08998 * 109.47544 * 300.00581 * 22 13 12 46 46 H 1.09000 * 109.47156 * 179.97438 * 23 22 13 47 47 H 1.09007 * 109.47356 * 59.99868 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7214 1.2491 5 7 1.6524 -2.1330 1.1904 6 6 1.9956 -2.9682 2.1909 7 8 2.6258 -2.5513 3.1397 8 6 1.5974 -4.4204 2.1303 9 7 2.0860 -5.1126 3.3302 10 6 1.7149 -6.5338 3.3060 11 6 1.6576 -7.0705 4.7375 12 6 1.2705 -8.5505 4.7122 13 6 2.3126 -9.3366 3.9142 14 6 3.6638 -9.1818 4.5632 15 1 3.7690 -8.5823 5.4554 16 6 4.7661 -9.8056 4.0180 17 7 5.9463 -9.6660 4.5813 18 14 4.5845 -10.8419 2.4745 19 1 4.7860 -9.9865 1.2775 20 1 5.5987 -11.9265 2.4843 21 1 3.2242 -11.4365 2.4347 22 6 2.3700 -8.8000 2.4826 23 6 2.7570 -7.3200 2.5079 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8901 27 1 1.8933 -0.5138 -0.8901 28 1 3.1299 1.4425 -0.0005 29 1 1.6766 1.9564 -0.8899 30 1 1.6767 1.9563 0.8900 31 1 1.6054 -0.2619 2.1369 32 1 3.1263 -0.6444 1.2950 33 1 1.1488 -2.4664 0.4315 34 1 2.0326 -4.8797 1.2428 35 1 0.5111 -4.4976 2.0837 36 1 3.0837 -5.0008 3.4311 37 1 0.7377 -6.6461 2.8364 38 1 0.9149 -6.5107 5.3059 39 1 2.6349 -6.9581 5.2071 40 1 0.2932 -8.6624 4.2428 41 1 1.2292 -8.9327 5.7322 42 1 2.0371 -10.3911 3.8966 43 1 6.7216 -10.1051 4.1979 44 1 3.1121 -9.3603 1.9140 45 1 1.3926 -8.9119 2.0132 46 1 2.7983 -6.9377 1.4879 47 1 3.7344 -7.2080 2.9773 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173330792.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:32 Heat of formation + Delta-G solvation = -61.667215 kcal Electronic energy + Delta-G solvation = -22699.703580 eV Core-core repulsion = 19495.195374 eV Total energy + Delta-G solvation = -3204.508206 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.82166 -38.32939 -36.91168 -34.65359 -33.41567 -32.05115 -29.95827 -29.49597 -27.60921 -27.09656 -25.12710 -23.83701 -21.85645 -20.87466 -20.72884 -20.33819 -18.76526 -17.11362 -16.46893 -16.23122 -15.88299 -15.23814 -14.97646 -14.44384 -14.30584 -14.05947 -13.84793 -13.54640 -13.28136 -13.22597 -12.76647 -12.53078 -12.46505 -12.31444 -12.10297 -11.91533 -11.55558 -11.43069 -11.38062 -11.32225 -11.12977 -10.84868 -10.44895 -10.18147 -9.97538 -9.80917 -9.72089 -9.30154 -9.19338 -9.10315 -8.78537 -8.47905 -7.94766 -6.01168 -3.97828 2.68799 3.02066 3.27737 3.39201 3.41283 4.34412 4.45050 4.46312 4.51982 4.62979 4.82564 5.12522 5.20719 5.26485 5.30094 5.31896 5.35210 5.40614 5.48072 5.51150 5.56025 5.63528 5.69424 5.83556 5.87361 5.89616 6.10723 6.21671 6.28078 6.31601 6.33634 6.44702 6.54088 6.67515 6.78682 7.02007 7.12921 7.14331 7.30838 7.34887 7.49286 7.54229 7.74165 7.87127 8.24351 8.60714 9.04668 9.62196 11.12004 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.027542 B = 0.003151 C = 0.003077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1016.398711 B = 8883.429861 C = 9097.900497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.109 4.109 3 C -0.145 4.145 4 C 0.124 3.876 5 N -0.737 5.737 6 C 0.511 3.489 7 O -0.522 6.522 8 C 0.041 3.959 9 N -0.670 5.670 10 C 0.098 3.902 11 C -0.095 4.095 12 C -0.096 4.096 13 C 0.006 3.994 14 C -0.500 4.500 15 H 0.076 0.924 16 C 0.067 3.933 17 N -0.903 5.903 18 Si 0.884 3.116 19 H -0.282 1.282 20 H -0.300 1.300 21 H -0.268 1.268 22 C -0.112 4.112 23 C -0.134 4.134 24 H 0.057 0.943 25 H 0.055 0.945 26 H 0.058 0.942 27 H 0.076 0.924 28 H 0.058 0.942 29 H 0.059 0.941 30 H 0.058 0.942 31 H 0.067 0.933 32 H 0.066 0.934 33 H 0.398 0.602 34 H 0.057 0.943 35 H 0.097 0.903 36 H 0.353 0.647 37 H 0.064 0.936 38 H 0.047 0.953 39 H 0.077 0.923 40 H 0.034 0.966 41 H 0.055 0.945 42 H 0.025 0.975 43 H 0.261 0.739 44 H 0.043 0.957 45 H 0.034 0.966 46 H 0.033 0.967 47 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.814 16.995 -11.955 23.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.127 4.127 3 C -0.203 4.203 4 C 0.000 4.000 5 N -0.392 5.392 6 C 0.297 3.703 7 O -0.396 6.396 8 C -0.092 4.092 9 N -0.302 5.302 10 C -0.011 4.011 11 C -0.133 4.133 12 C -0.134 4.134 13 C -0.013 4.013 14 C -0.538 4.538 15 H 0.094 0.906 16 C -0.134 4.134 17 N -0.542 5.542 18 Si 0.716 3.284 19 H -0.209 1.209 20 H -0.228 1.228 21 H -0.193 1.193 22 C -0.150 4.150 23 C -0.173 4.173 24 H 0.076 0.924 25 H 0.074 0.926 26 H 0.077 0.923 27 H 0.094 0.906 28 H 0.077 0.923 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.085 0.915 32 H 0.084 0.916 33 H 0.232 0.768 34 H 0.075 0.925 35 H 0.115 0.885 36 H 0.172 0.828 37 H 0.082 0.918 38 H 0.066 0.934 39 H 0.095 0.905 40 H 0.053 0.947 41 H 0.073 0.927 42 H 0.043 0.957 43 H 0.071 0.929 44 H 0.061 0.939 45 H 0.053 0.947 46 H 0.052 0.948 47 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -11.690 17.462 -10.852 23.651 hybrid contribution 0.479 -1.095 -2.133 2.445 sum -11.211 16.367 -12.985 23.711 Atomic orbital electron populations 1.21873 0.94669 1.01981 1.02124 1.21359 0.96484 0.96972 0.97933 1.21764 1.01346 0.94980 1.02234 1.21388 1.00066 0.80603 0.97928 1.46029 1.59208 1.09774 1.24162 1.20804 0.79203 0.88375 0.81926 1.90722 1.38642 1.77691 1.32566 1.21805 1.01983 0.90731 0.94645 1.60420 1.21458 1.12476 1.35869 1.21561 0.97342 0.84632 0.97550 1.21367 1.02422 0.94919 0.94582 1.21363 0.96993 0.95071 0.99973 1.19217 0.96086 0.94828 0.91152 1.21040 0.90037 1.30577 1.12101 0.90553 1.25018 0.95338 0.96081 0.96924 1.69909 0.99202 1.44373 1.40712 0.86891 0.77475 0.80003 0.84070 1.20919 1.22795 1.19283 1.21772 0.97938 0.95431 0.99885 1.22086 1.01337 0.96252 0.97654 0.92439 0.92556 0.92338 0.90577 0.92286 0.92201 0.92267 0.91513 0.91594 0.76782 0.92528 0.88522 0.82755 0.91823 0.93384 0.90467 0.94680 0.92653 0.95703 0.92879 0.93876 0.94740 0.94829 0.89699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.83 9.07 37.15 0.34 -0.49 16 2 C -0.11 -0.67 2.96 -90.62 -0.27 -0.93 16 3 C -0.15 -0.81 9.19 37.16 0.34 -0.47 16 4 C 0.12 1.11 5.06 -4.04 -0.02 1.09 16 5 N -0.74 -6.97 5.28 -60.30 -0.32 -7.28 16 6 C 0.51 6.83 7.87 -10.99 -0.09 6.74 16 7 O -0.52 -9.32 16.20 5.55 0.09 -9.23 16 8 C 0.04 0.52 5.97 -4.98 -0.03 0.49 16 9 N -0.67 -10.91 5.87 -108.00 -0.63 -11.54 16 10 C 0.10 1.68 2.47 -67.71 -0.17 1.51 16 11 C -0.09 -1.80 5.30 -26.73 -0.14 -1.94 16 12 C -0.10 -1.88 5.41 -26.73 -0.14 -2.03 16 13 C 0.01 0.14 2.18 -91.77 -0.20 -0.06 16 14 C -0.50 -13.55 7.19 -34.44 -0.25 -13.79 16 15 H 0.08 2.26 6.95 -52.49 -0.37 1.89 16 16 C 0.07 1.91 5.45 -17.82 -0.10 1.81 16 17 N -0.90 -27.54 13.96 55.43 0.77 -26.76 16 18 Si 0.88 22.00 24.37 -169.99 -4.14 17.85 16 19 H -0.28 -6.85 6.87 56.52 0.39 -6.46 16 20 H -0.30 -7.56 7.11 56.52 0.40 -7.16 16 21 H -0.27 -6.39 6.53 56.52 0.37 -6.02 16 22 C -0.11 -2.35 4.94 -26.73 -0.13 -2.49 16 23 C -0.13 -2.59 4.95 -26.73 -0.13 -2.72 16 24 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 25 H 0.06 0.30 7.18 -51.93 -0.37 -0.07 16 26 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 28 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.07 0.67 8.14 -51.92 -0.42 0.25 16 32 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 33 H 0.40 2.64 7.66 -40.82 -0.31 2.32 16 34 H 0.06 0.65 7.44 -51.93 -0.39 0.27 16 35 H 0.10 1.04 8.05 -51.93 -0.42 0.62 16 36 H 0.35 6.28 8.17 -39.29 -0.32 5.96 16 37 H 0.06 1.00 7.80 -51.93 -0.40 0.59 16 38 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.08 1.68 6.62 -51.93 -0.34 1.33 16 40 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 41 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 42 H 0.02 0.59 7.20 -51.93 -0.37 0.22 16 43 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 44 H 0.04 0.97 3.27 -51.93 -0.17 0.80 16 45 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 46 H 0.03 0.57 7.46 -51.93 -0.39 0.19 16 47 H 0.08 1.91 7.21 -51.93 -0.37 1.53 16 LS Contribution 355.22 15.07 5.35 5.35 Total: -1.00 -31.85 355.22 -8.35 -40.20 By element: Atomic # 1 Polarization: 13.17 SS G_CDS: -8.48 Total: 4.68 kcal Atomic # 6 Polarization: -12.29 SS G_CDS: -0.99 Total: -13.28 kcal Atomic # 7 Polarization: -45.41 SS G_CDS: -0.18 Total: -45.59 kcal Atomic # 8 Polarization: -9.32 SS G_CDS: 0.09 Total: -9.23 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -4.14 Total: 17.85 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -31.85 -8.35 -40.20 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173330792.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.463 kcal (2) G-P(sol) polarization free energy of solvation -31.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds