Wall clock time and date at job start Tue Mar 31 2020 06:42:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.47088 * 2 1 4 4 C 1.52996 * 109.47464 * 120.00808 * 2 1 3 5 5 N 1.46498 * 109.47745 * 64.99370 * 4 2 1 6 6 C 1.34770 * 120.00370 * 180.02562 * 5 4 2 7 7 O 1.21286 * 120.00018 * 359.97438 * 6 5 4 8 8 C 1.50701 * 120.00166 * 180.02562 * 6 5 4 9 9 N 1.46893 * 109.47153 * 180.02562 * 8 6 5 10 10 C 1.46905 * 111.00246 * 179.97438 * 9 8 6 11 11 C 1.52995 * 109.47500 * 204.99866 * 10 9 8 12 12 C 1.53000 * 109.47200 * 179.97438 * 11 10 9 13 13 C 1.53001 * 109.46989 * 60.00030 * 12 11 10 14 14 C 1.50694 * 109.47168 * 59.99989 * 13 12 11 15 15 H 1.08000 * 120.00563 * 359.97438 * 14 13 12 16 16 C 1.37885 * 119.99902 * 179.97438 * 14 13 12 17 17 N 1.31518 * 119.99792 * 179.72330 * 16 14 13 18 18 Si 1.86795 * 120.00009 * 0.02562 * 16 14 13 19 19 H 1.48501 * 109.47088 * 89.99795 * 18 16 14 20 20 H 1.48495 * 109.47293 * 209.99997 * 18 16 14 21 21 H 1.48507 * 109.47015 * 329.99955 * 18 16 14 22 22 C 1.53000 * 109.47124 * 299.99675 * 13 12 11 23 23 C 1.53000 * 109.46922 * 60.00284 * 22 13 12 24 24 H 1.08997 * 109.47705 * 59.99293 * 1 2 3 25 25 H 1.09003 * 109.47592 * 179.97438 * 1 2 3 26 26 H 1.09006 * 109.46903 * 299.99647 * 1 2 3 27 27 H 1.09006 * 109.46903 * 240.00353 * 2 1 3 28 28 H 1.09000 * 109.46854 * 180.02562 * 3 2 1 29 29 H 1.08995 * 109.47361 * 300.00331 * 3 2 1 30 30 H 1.08998 * 109.47021 * 60.00707 * 3 2 1 31 31 H 1.09008 * 109.46634 * 304.99371 * 4 2 1 32 32 H 1.08995 * 109.47191 * 185.00293 * 4 2 1 33 33 H 0.96999 * 119.99731 * 0.02562 * 5 4 2 34 34 H 1.08994 * 109.47327 * 59.99822 * 8 6 5 35 35 H 1.09002 * 109.46995 * 299.99795 * 8 6 5 36 36 H 1.00900 * 111.00244 * 303.94758 * 9 8 6 37 37 H 1.08998 * 109.46545 * 324.99920 * 10 9 8 38 38 H 1.08995 * 109.47132 * 59.99890 * 11 10 9 39 39 H 1.09007 * 109.46935 * 300.00130 * 11 10 9 40 40 H 1.08998 * 109.46768 * 300.00007 * 12 11 10 41 41 H 1.09000 * 109.47156 * 180.02562 * 12 11 10 42 42 H 1.09002 * 109.46926 * 179.97438 * 13 12 11 43 43 H 0.97000 * 119.99468 * 179.97438 * 17 16 14 44 44 H 1.08995 * 109.47131 * 180.02562 * 22 13 12 45 45 H 1.08998 * 109.47544 * 300.00581 * 22 13 12 46 46 H 1.09000 * 109.47156 * 179.97438 * 23 22 13 47 47 H 1.09007 * 109.47356 * 59.99868 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7214 1.2491 5 7 1.6524 -2.1330 1.1904 6 6 1.9956 -2.9682 2.1909 7 8 2.6258 -2.5513 3.1397 8 6 1.5974 -4.4204 2.1303 9 7 2.0860 -5.1126 3.3302 10 6 1.7149 -6.5338 3.3060 11 6 1.6576 -7.0705 4.7375 12 6 1.2705 -8.5505 4.7122 13 6 2.3126 -9.3366 3.9142 14 6 3.6638 -9.1818 4.5632 15 1 3.7690 -8.5823 5.4554 16 6 4.7661 -9.8056 4.0180 17 7 5.9463 -9.6660 4.5813 18 14 4.5845 -10.8419 2.4745 19 1 4.7860 -9.9865 1.2775 20 1 5.5987 -11.9265 2.4843 21 1 3.2242 -11.4365 2.4347 22 6 2.3700 -8.8000 2.4826 23 6 2.7570 -7.3200 2.5079 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8901 27 1 1.8933 -0.5138 -0.8901 28 1 3.1299 1.4425 -0.0005 29 1 1.6766 1.9564 -0.8899 30 1 1.6767 1.9563 0.8900 31 1 1.6054 -0.2619 2.1369 32 1 3.1263 -0.6444 1.2950 33 1 1.1488 -2.4664 0.4315 34 1 2.0326 -4.8797 1.2428 35 1 0.5111 -4.4976 2.0837 36 1 3.0837 -5.0008 3.4311 37 1 0.7377 -6.6461 2.8364 38 1 0.9149 -6.5107 5.3059 39 1 2.6349 -6.9581 5.2071 40 1 0.2932 -8.6624 4.2428 41 1 1.2292 -8.9327 5.7322 42 1 2.0371 -10.3911 3.8966 43 1 6.7216 -10.1051 4.1979 44 1 3.1121 -9.3603 1.9140 45 1 1.3926 -8.9119 2.0132 46 1 2.7983 -6.9377 1.4879 47 1 3.7344 -7.2080 2.9773 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173330792.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:31 Heat of formation + Delta-G solvation = -84.809161 kcal Electronic energy + Delta-G solvation = -22700.707090 eV Core-core repulsion = 19495.195374 eV Total energy + Delta-G solvation = -3205.511716 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.86739 -39.80935 -37.66992 -36.10221 -34.27364 -34.03883 -31.55334 -30.93163 -28.23956 -28.03608 -26.60076 -25.24161 -23.43229 -22.20652 -21.66771 -21.14705 -20.48489 -18.37213 -17.97885 -17.29103 -17.00918 -16.68296 -16.00894 -15.79899 -15.61546 -15.32225 -15.16471 -14.74964 -14.39096 -14.22992 -14.09636 -13.88791 -13.65067 -13.37758 -13.21323 -13.03851 -12.94591 -12.79864 -12.63186 -12.25185 -12.03570 -11.85661 -11.79557 -11.71724 -11.64171 -11.56047 -11.09595 -10.84624 -10.80977 -10.66384 -10.55569 -10.08916 -9.22780 -8.21511 -6.21220 1.30218 1.36448 1.46545 1.66521 2.14231 2.36981 3.14906 3.32527 3.77616 3.89060 3.95177 3.97959 4.08423 4.13006 4.31925 4.39019 4.46766 4.58993 4.63270 4.66189 4.67407 4.74220 4.78993 4.80883 4.84852 4.88361 4.94755 5.00181 5.04017 5.08531 5.22377 5.23655 5.35200 5.41037 5.45389 5.50837 5.52356 5.53093 5.62147 5.78479 5.86903 6.16158 6.32421 6.44368 6.61855 6.85541 7.30672 7.41907 8.95682 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.027542 B = 0.003151 C = 0.003077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1016.398711 B = 8883.429861 C = 9097.900497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.099 4.099 3 C -0.146 4.146 4 C 0.123 3.877 5 N -0.717 5.717 6 C 0.508 3.492 7 O -0.577 6.577 8 C 0.042 3.958 9 N -0.684 5.684 10 C 0.110 3.890 11 C -0.092 4.092 12 C -0.092 4.092 13 C 0.000 4.000 14 C -0.489 4.489 15 H 0.032 0.968 16 C 0.005 3.995 17 N -0.958 5.958 18 Si 0.947 3.053 19 H -0.270 1.270 20 H -0.308 1.308 21 H -0.244 1.244 22 C -0.113 4.113 23 C -0.130 4.130 24 H 0.069 0.931 25 H 0.061 0.939 26 H 0.050 0.950 27 H 0.087 0.913 28 H 0.054 0.946 29 H 0.072 0.928 30 H 0.055 0.945 31 H 0.053 0.947 32 H 0.050 0.950 33 H 0.416 0.584 34 H 0.078 0.922 35 H 0.127 0.873 36 H 0.338 0.662 37 H 0.099 0.901 38 H 0.063 0.937 39 H 0.032 0.968 40 H 0.074 0.926 41 H 0.043 0.957 42 H 0.022 0.978 43 H 0.260 0.740 44 H 0.027 0.973 45 H 0.075 0.925 46 H 0.061 0.939 47 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.120 17.246 -15.297 27.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.118 4.118 3 C -0.204 4.204 4 C -0.001 4.001 5 N -0.371 5.371 6 C 0.295 3.705 7 O -0.456 6.456 8 C -0.090 4.090 9 N -0.314 5.314 10 C 0.001 3.999 11 C -0.131 4.131 12 C -0.130 4.130 13 C -0.019 4.019 14 C -0.527 4.527 15 H 0.050 0.950 16 C -0.190 4.190 17 N -0.600 5.600 18 Si 0.776 3.224 19 H -0.197 1.197 20 H -0.237 1.237 21 H -0.168 1.168 22 C -0.151 4.151 23 C -0.169 4.169 24 H 0.088 0.912 25 H 0.080 0.920 26 H 0.069 0.931 27 H 0.105 0.895 28 H 0.073 0.927 29 H 0.091 0.909 30 H 0.074 0.926 31 H 0.071 0.929 32 H 0.069 0.931 33 H 0.253 0.747 34 H 0.095 0.905 35 H 0.145 0.855 36 H 0.156 0.844 37 H 0.117 0.883 38 H 0.081 0.919 39 H 0.051 0.949 40 H 0.092 0.908 41 H 0.062 0.938 42 H 0.040 0.960 43 H 0.069 0.931 44 H 0.046 0.954 45 H 0.094 0.906 46 H 0.080 0.920 47 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -15.065 17.729 -14.247 27.281 hybrid contribution 1.492 -1.072 -1.010 2.096 sum -13.572 16.658 -15.257 26.353 Atomic orbital electron populations 1.21875 0.93874 1.02424 1.02386 1.21309 0.97007 0.96897 0.96571 1.21781 1.01174 0.94736 1.02726 1.21441 0.99206 0.80433 0.99052 1.45874 1.58007 1.09602 1.23620 1.21056 0.78526 0.89143 0.81776 1.90710 1.41351 1.78626 1.34927 1.21943 1.03656 0.89628 0.93728 1.60367 1.20544 1.12115 1.38344 1.21432 0.98096 0.84668 0.95713 1.21303 1.00330 0.95142 0.96278 1.21323 0.97742 0.94666 0.99282 1.19258 0.94143 0.95431 0.93042 1.21303 0.92554 1.28405 1.10474 0.95006 1.25861 0.94881 0.97842 1.00459 1.70083 1.00287 1.46557 1.43055 0.85862 0.78192 0.78112 0.80263 1.19689 1.23682 1.16819 1.21740 0.99719 0.95811 0.97846 1.22017 0.99663 0.96052 0.99143 0.91213 0.92021 0.93084 0.89484 0.92654 0.90874 0.92620 0.92894 0.93124 0.74683 0.90464 0.85514 0.84415 0.88344 0.91880 0.94943 0.90765 0.93775 0.95996 0.93130 0.95440 0.90598 0.92038 0.94382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 9.07 71.98 0.65 -0.61 16 2 C -0.10 -1.01 2.96 -10.80 -0.03 -1.04 16 3 C -0.15 -1.40 9.19 71.98 0.66 -0.74 16 4 C 0.12 2.08 5.06 86.38 0.44 2.51 16 5 N -0.72 -12.04 5.28 -463.07 -2.45 -14.48 16 6 C 0.51 12.85 7.87 87.66 0.69 13.54 16 7 O -0.58 -20.89 16.20 -3.05 -0.05 -20.94 16 8 C 0.04 0.93 5.97 85.56 0.51 1.44 16 9 N -0.68 -21.23 5.87 -495.59 -2.91 -24.14 16 10 C 0.11 3.47 2.47 44.91 0.11 3.58 16 11 C -0.09 -3.42 5.30 30.59 0.16 -3.26 16 12 C -0.09 -3.44 5.41 30.59 0.17 -3.27 16 13 C 0.00 0.00 2.18 -11.54 -0.03 -0.02 16 14 C -0.49 -27.42 7.19 25.60 0.18 -27.23 16 15 H 0.03 2.01 6.95 -2.91 -0.02 1.99 16 16 C 0.00 0.28 5.45 84.66 0.46 0.74 16 17 N -0.96 -61.27 13.96 21.45 0.30 -60.97 16 18 Si 0.95 45.45 24.37 68.60 1.67 47.12 16 19 H -0.27 -12.36 6.87 99.48 0.68 -11.68 16 20 H -0.31 -15.07 7.11 99.48 0.71 -14.36 16 21 H -0.24 -10.70 6.53 99.48 0.65 -10.05 16 22 C -0.11 -4.37 4.94 30.59 0.15 -4.22 16 23 C -0.13 -4.71 4.95 30.60 0.15 -4.56 16 24 H 0.07 0.45 8.14 -2.39 -0.02 0.43 16 25 H 0.06 0.46 7.18 -2.39 -0.02 0.44 16 26 H 0.05 0.52 8.14 -2.38 -0.02 0.50 16 27 H 0.09 0.74 8.14 -2.38 -0.02 0.72 16 28 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 29 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 30 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 31 H 0.05 1.06 8.14 -2.38 -0.02 1.04 16 32 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.42 4.05 7.66 -92.71 -0.71 3.34 16 34 H 0.08 1.43 7.44 -2.39 -0.02 1.42 16 35 H 0.13 2.06 8.05 -2.39 -0.02 2.04 16 36 H 0.34 12.26 8.17 -89.69 -0.73 11.52 16 37 H 0.10 2.51 7.80 -2.39 -0.02 2.49 16 38 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 39 H 0.03 1.47 6.62 -2.38 -0.02 1.45 16 40 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 41 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 42 H 0.02 0.99 7.20 -2.39 -0.02 0.97 16 43 H 0.26 15.74 8.31 -92.71 -0.77 14.97 16 44 H 0.03 1.15 3.27 -2.39 -0.01 1.14 16 45 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 46 H 0.06 1.88 7.46 -2.39 -0.02 1.86 16 47 H 0.04 1.73 7.21 -2.38 -0.02 1.72 16 Total: -1.00 -73.92 355.22 0.27 -73.65 By element: Atomic # 1 Polarization: 23.48 SS G_CDS: -0.58 Total: 22.90 kcal Atomic # 6 Polarization: -27.42 SS G_CDS: 4.28 Total: -23.14 kcal Atomic # 7 Polarization: -94.54 SS G_CDS: -5.06 Total: -99.60 kcal Atomic # 8 Polarization: -20.89 SS G_CDS: -0.05 Total: -20.94 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 1.67 Total: 47.12 kcal Total: -73.92 0.27 -73.65 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173330792.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.161 kcal (2) G-P(sol) polarization free energy of solvation -73.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds