Wall clock time and date at job start Tue Mar 31 2020 05:29:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53001 * 109.47049 * 2 1 4 4 C 1.52998 * 109.46903 * 179.97438 * 3 2 1 5 5 C 1.53001 * 109.46903 * 179.97438 * 4 3 2 6 6 H 1.08998 * 109.47383 * 55.00309 * 5 4 3 7 7 N 1.46906 * 109.47211 * 295.00036 * 5 4 3 8 8 C 1.46898 * 110.99961 * 154.99884 * 7 5 4 9 9 C 1.53006 * 109.47006 * 84.99970 * 8 7 5 10 10 C 1.52997 * 109.47127 * 179.97438 * 9 8 7 11 11 C 1.53000 * 109.47060 * 300.00449 * 10 9 8 12 12 C 1.50703 * 109.46912 * 179.97438 * 11 10 9 13 13 H 1.08001 * 119.99776 * 0.02562 * 12 11 10 14 14 C 1.37877 * 120.00001 * 179.97438 * 12 11 10 15 15 N 1.31511 * 120.00114 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 119.99955 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.46999 * 0.02562 * 16 14 12 18 18 H 1.48504 * 109.46979 * 120.00420 * 16 14 12 19 19 H 1.48498 * 109.46942 * 240.00334 * 16 14 12 20 20 C 1.52996 * 109.47328 * 60.00126 * 11 10 9 21 21 C 1.52997 * 109.47123 * 204.99951 * 8 7 5 22 22 C 1.50703 * 109.47111 * 175.00092 * 5 4 3 23 23 N 1.34776 * 119.99831 * 300.00281 * 22 5 4 24 24 O 1.21281 * 119.99960 * 120.00083 * 22 5 4 25 25 H 1.09000 * 109.47266 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.46815 * 300.00092 * 1 2 3 27 27 H 1.08996 * 109.47034 * 59.99986 * 1 2 3 28 28 H 1.08996 * 109.46978 * 239.99823 * 2 1 3 29 29 H 1.08996 * 109.47034 * 120.00014 * 2 1 3 30 30 H 1.08998 * 109.46958 * 59.99751 * 3 2 1 31 31 H 1.08996 * 109.46838 * 300.00293 * 3 2 1 32 32 H 1.09005 * 109.46844 * 59.99979 * 4 3 2 33 33 H 1.08996 * 109.47150 * 299.99996 * 4 3 2 34 34 H 1.00893 * 110.99825 * 278.95556 * 7 5 4 35 35 H 1.09001 * 109.47062 * 325.00224 * 8 7 5 36 36 H 1.08998 * 109.46505 * 59.99663 * 9 8 7 37 37 H 1.08996 * 109.46884 * 300.00544 * 9 8 7 38 38 H 1.09002 * 109.47153 * 180.02562 * 10 9 8 39 39 H 1.09001 * 109.46832 * 60.00321 * 10 9 8 40 40 H 1.09001 * 109.47194 * 299.99650 * 11 10 9 41 41 H 0.97000 * 120.00354 * 180.02562 * 15 14 12 42 42 H 1.08992 * 109.47554 * 59.99639 * 20 11 10 43 43 H 1.09004 * 109.47108 * 179.97438 * 20 11 10 44 44 H 1.09002 * 109.47045 * 60.00157 * 21 8 7 45 45 H 1.09001 * 109.47375 * 300.00082 * 21 8 7 46 46 H 0.97001 * 120.00352 * 359.97438 * 23 22 5 47 47 H 0.97001 * 119.99673 * 180.02562 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0800 2.8850 0.0000 6 1 3.6451 3.4245 0.8413 7 7 3.6919 3.5411 -1.2558 8 6 3.6130 4.9981 -1.0861 9 6 5.0032 5.6093 -1.2729 10 6 4.9209 7.1269 -1.0967 11 6 3.9632 7.7099 -2.1378 12 6 3.8817 9.2047 -1.9638 13 1 4.4559 9.6902 -1.1886 14 6 3.0749 9.9525 -2.7950 15 7 2.3761 9.3613 -3.7394 16 14 2.9733 11.8052 -2.5790 17 1 3.8489 12.2210 -1.4539 18 1 3.4203 12.4743 -3.8271 19 1 1.5705 12.1930 -2.2845 20 6 2.5731 7.0988 -1.9509 21 6 2.6552 5.5816 -2.1268 22 6 5.5819 2.8869 0.1244 23 7 6.1693 2.3343 1.2043 24 8 6.2620 3.3856 -0.7471 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 1.8934 -0.5138 -0.8899 29 1 1.8934 -0.5138 0.8899 30 1 1.6767 1.9563 0.8900 31 1 1.6767 1.9563 -0.8899 32 1 3.9337 0.9285 -0.8892 33 1 3.9330 0.9288 0.8908 34 1 4.3261 3.2977 -2.0019 35 1 3.2464 5.2280 -0.0856 36 1 5.3696 5.3793 -2.2733 37 1 5.6854 5.1935 -0.5315 38 1 5.9112 7.5624 -1.2302 39 1 4.5542 7.3571 -0.0964 40 1 4.3299 7.4797 -3.1381 41 1 1.8088 9.8874 -4.3244 42 1 2.2064 7.3290 -0.9507 43 1 1.8907 7.5145 -2.6923 44 1 1.6649 5.1461 -1.9937 45 1 3.0218 5.3517 -3.1272 46 1 5.6254 1.9357 1.9016 47 1 7.1360 2.3358 1.2845 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173332465.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:05 Heat of formation + Delta-G solvation = -78.544414 kcal Electronic energy + Delta-G solvation = -23296.005730 eV Core-core repulsion = 20090.765673 eV Total energy + Delta-G solvation = -3205.240056 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.16997 -37.64765 -36.30687 -34.30584 -33.83781 -32.37513 -30.61973 -29.55612 -28.06026 -26.06356 -23.91964 -22.89462 -21.43519 -21.08730 -20.47450 -20.24037 -18.72166 -17.56381 -16.80228 -16.26254 -15.81267 -15.42058 -14.63439 -14.52300 -14.17187 -14.10904 -13.53638 -13.34660 -13.07929 -12.99692 -12.59967 -12.37685 -11.97923 -11.86009 -11.76979 -11.27602 -11.24928 -11.05770 -10.96672 -10.90326 -10.63823 -10.54818 -10.36884 -10.31040 -10.05947 -9.90223 -9.71512 -9.70298 -9.26607 -8.66898 -8.63118 -8.19494 -8.03968 -5.88219 -3.93918 2.56831 3.34651 3.42496 3.45564 3.46743 4.32288 4.51867 4.57511 4.83691 4.91209 5.03185 5.09593 5.21445 5.36073 5.40947 5.52964 5.63643 5.67227 5.74565 5.79583 5.85978 5.90247 6.05834 6.10103 6.22479 6.29272 6.41786 6.50364 6.56278 6.59186 6.70361 6.75968 6.89450 7.00936 7.01623 7.16828 7.27943 7.37505 7.46187 7.61605 7.71924 7.86284 8.16058 8.18802 8.29377 8.59629 9.10693 9.70028 11.17162 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.020181 B = 0.003923 C = 0.003410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1387.128877 B = 7136.051771 C = 8209.880047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.124 4.124 3 C -0.113 4.113 4 C -0.100 4.100 5 C 0.068 3.932 6 H 0.101 0.899 7 N -0.659 5.659 8 C 0.090 3.910 9 C -0.141 4.141 10 C -0.106 4.106 11 C 0.048 3.952 12 C -0.510 4.510 13 H 0.052 0.948 14 C 0.060 3.940 15 N -0.890 5.890 16 Si 0.887 3.113 17 H -0.275 1.275 18 H -0.285 1.285 19 H -0.285 1.285 20 C -0.107 4.107 21 C -0.100 4.100 22 C 0.482 3.518 23 N -0.858 5.858 24 O -0.527 6.527 25 H 0.049 0.951 26 H 0.052 0.948 27 H 0.056 0.944 28 H 0.059 0.941 29 H 0.055 0.945 30 H 0.058 0.942 31 H 0.082 0.918 32 H 0.066 0.934 33 H 0.061 0.939 34 H 0.349 0.651 35 H 0.065 0.935 36 H 0.055 0.945 37 H 0.059 0.941 38 H 0.041 0.959 39 H 0.041 0.959 40 H 0.023 0.977 41 H 0.258 0.742 42 H 0.030 0.970 43 H 0.092 0.908 44 H 0.046 0.954 45 H 0.051 0.949 46 H 0.399 0.601 47 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.467 -19.648 10.654 22.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.162 4.162 3 C -0.150 4.150 4 C -0.138 4.138 5 C -0.047 4.047 6 H 0.119 0.881 7 N -0.289 5.289 8 C -0.019 4.019 9 C -0.179 4.179 10 C -0.144 4.144 11 C 0.030 3.970 12 C -0.549 4.549 13 H 0.070 0.930 14 C -0.141 4.141 15 N -0.529 5.529 16 Si 0.715 3.285 17 H -0.199 1.199 18 H -0.212 1.212 19 H -0.211 1.211 20 C -0.146 4.146 21 C -0.138 4.138 22 C 0.266 3.734 23 N -0.422 5.422 24 O -0.402 6.402 25 H 0.068 0.932 26 H 0.071 0.929 27 H 0.075 0.925 28 H 0.078 0.922 29 H 0.074 0.926 30 H 0.076 0.924 31 H 0.101 0.899 32 H 0.085 0.915 33 H 0.080 0.920 34 H 0.170 0.830 35 H 0.083 0.917 36 H 0.073 0.927 37 H 0.077 0.923 38 H 0.060 0.940 39 H 0.060 0.940 40 H 0.042 0.958 41 H 0.068 0.932 42 H 0.049 0.951 43 H 0.110 0.890 44 H 0.065 0.935 45 H 0.070 0.930 46 H 0.227 0.773 47 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -0.081 -19.332 9.915 21.726 hybrid contribution 1.115 1.109 0.608 1.686 sum 1.035 -18.223 10.524 21.068 Atomic orbital electron populations 1.21768 0.95999 1.01192 1.02055 1.21541 0.95855 0.97338 1.01456 1.21525 0.93974 0.96104 1.03421 1.21522 0.97043 0.93461 1.01797 1.21854 0.88690 0.97772 0.96344 0.88085 1.61018 1.53731 1.09671 1.04452 1.21762 0.96029 0.84457 0.99658 1.22403 0.96368 0.97360 1.01796 1.21601 0.99781 0.92993 1.00036 1.18659 0.90737 0.93935 0.93690 1.21307 1.25558 0.92247 1.15740 0.92956 1.24967 0.95741 0.98085 0.95273 1.69892 1.28848 1.34875 1.19334 0.86620 0.77668 0.86309 0.77885 1.19936 1.21159 1.21121 1.21584 1.01775 0.90489 1.00736 1.21546 0.96962 0.97915 0.97405 1.22086 0.93010 0.76770 0.81534 1.44004 1.11276 1.62829 1.24131 1.90775 1.65764 1.43513 1.40164 0.93189 0.92855 0.92484 0.92233 0.92641 0.92352 0.89907 0.91485 0.92042 0.83027 0.91694 0.92653 0.92256 0.93984 0.94039 0.95849 0.93247 0.95116 0.89020 0.93479 0.93046 0.77306 0.77373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 9.91 37.16 0.37 -0.83 16 2 C -0.12 -0.98 5.93 -26.73 -0.16 -1.13 16 3 C -0.11 -1.02 5.10 -26.73 -0.14 -1.16 16 4 C -0.10 -0.87 4.83 -26.73 -0.13 -1.00 16 5 C 0.07 0.77 2.40 -68.86 -0.17 0.60 16 6 H 0.10 1.10 7.43 -51.93 -0.39 0.72 16 7 N -0.66 -9.48 5.48 -100.95 -0.55 -10.03 16 8 C 0.09 1.57 2.47 -67.71 -0.17 1.41 16 9 C -0.14 -2.75 4.01 -26.73 -0.11 -2.86 16 10 C -0.11 -2.38 5.14 -26.73 -0.14 -2.51 16 11 C 0.05 1.25 2.10 -91.77 -0.19 1.05 16 12 C -0.51 -14.51 8.56 -34.44 -0.29 -14.81 16 13 H 0.05 1.48 7.74 -52.49 -0.41 1.08 16 14 C 0.06 1.70 5.30 -17.82 -0.09 1.61 16 15 N -0.89 -26.01 11.32 55.43 0.63 -25.38 16 16 Si 0.89 21.81 29.54 -169.99 -5.02 16.79 16 17 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 18 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 19 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 20 C -0.11 -2.58 4.98 -26.76 -0.13 -2.72 16 21 C -0.10 -2.00 5.53 -26.76 -0.15 -2.15 16 22 C 0.48 5.90 6.71 -10.98 -0.07 5.82 16 23 N -0.86 -6.82 8.74 31.22 0.27 -6.54 16 24 O -0.53 -8.74 13.24 5.56 0.07 -8.67 16 25 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 26 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 27 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 29 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.08 0.93 7.75 -51.93 -0.40 0.52 16 32 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.06 0.40 7.43 -51.93 -0.39 0.01 16 34 H 0.35 5.44 7.51 -39.30 -0.30 5.15 16 35 H 0.06 1.13 7.43 -51.93 -0.39 0.75 16 36 H 0.05 1.16 8.13 -51.93 -0.42 0.74 16 37 H 0.06 1.14 5.07 -51.93 -0.26 0.88 16 38 H 0.04 0.96 8.14 -51.93 -0.42 0.53 16 39 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.02 0.67 8.14 -51.93 -0.42 0.24 16 41 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 42 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.09 2.48 6.07 -51.93 -0.32 2.16 16 44 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 45 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 46 H 0.40 1.94 8.19 -40.82 -0.33 1.61 16 47 H 0.40 2.89 8.93 -40.82 -0.36 2.52 16 LS Contribution 358.44 15.07 5.40 5.40 Total: -1.00 -31.20 358.44 -9.36 -40.56 By element: Atomic # 1 Polarization: 15.12 SS G_CDS: -8.59 Total: 6.53 kcal Atomic # 6 Polarization: -17.09 SS G_CDS: -1.57 Total: -18.66 kcal Atomic # 7 Polarization: -42.31 SS G_CDS: 0.35 Total: -41.96 kcal Atomic # 8 Polarization: -8.74 SS G_CDS: 0.07 Total: -8.67 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -31.20 -9.36 -40.56 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173332465.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.982 kcal (2) G-P(sol) polarization free energy of solvation -31.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds