Wall clock time and date at job start Tue Mar 31 2020 06:11:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52997 * 109.47482 * 2 1 4 4 C 1.53000 * 109.47060 * 180.02562 * 3 2 1 5 5 H 1.08990 * 109.47170 * 54.99895 * 4 3 2 6 6 C 1.53005 * 109.46867 * 294.99684 * 4 3 2 7 7 C 1.53002 * 109.46776 * 174.99999 * 4 3 2 8 8 C 1.50701 * 109.46807 * 184.99822 * 7 4 3 9 9 O 1.21278 * 120.00202 * 359.97438 * 8 7 4 10 10 N 1.34781 * 119.99711 * 180.02562 * 8 7 4 11 11 C 1.47422 * 125.64881 * 359.69262 * 10 8 7 12 12 C 1.55135 * 104.72049 * 155.81908 * 11 10 8 13 13 C 1.55157 * 101.48673 * 37.29316 * 12 11 10 14 14 H 1.09001 * 110.71880 * 205.96866 * 13 12 11 15 15 N 1.46504 * 110.71852 * 82.69465 * 13 12 11 16 16 C 1.36943 * 119.99652 * 91.47836 * 15 13 12 17 17 H 1.08004 * 119.99896 * 359.97438 * 16 15 13 18 18 C 1.38810 * 119.99509 * 179.97438 * 16 15 13 19 19 N 1.31624 * 119.99506 * 180.02562 * 18 16 15 20 20 Si 1.86801 * 120.00278 * 359.97438 * 18 16 15 21 21 H 1.48496 * 109.46668 * 90.00187 * 20 18 16 22 22 H 1.48498 * 109.46760 * 209.99873 * 20 18 16 23 23 H 1.48499 * 109.46964 * 330.00261 * 20 18 16 24 24 C 1.47019 * 125.64603 * 179.97438 * 10 8 7 25 25 H 1.09000 * 109.88909 * 300.59386 * 24 10 8 26 26 C 1.52999 * 109.88369 * 61.60629 * 24 10 8 27 27 H 1.08996 * 109.47747 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47103 * 300.00247 * 1 2 3 29 29 H 1.09001 * 109.47066 * 60.00169 * 1 2 3 30 30 H 1.09002 * 109.47103 * 239.99753 * 2 1 3 31 31 H 1.08998 * 109.46862 * 120.00565 * 2 1 3 32 32 H 1.09002 * 109.47153 * 59.99783 * 3 2 1 33 33 H 1.09001 * 109.46832 * 299.99974 * 3 2 1 34 34 H 1.09001 * 109.47099 * 60.00379 * 6 4 3 35 35 H 1.09004 * 109.46908 * 180.02562 * 6 4 3 36 36 H 1.09000 * 109.47443 * 300.00098 * 6 4 3 37 37 H 1.08993 * 109.47416 * 304.99509 * 7 4 3 38 38 H 1.09001 * 109.46966 * 65.00241 * 7 4 3 39 39 H 1.09000 * 110.36470 * 274.74230 * 11 10 8 40 40 H 1.08996 * 110.36830 * 37.06684 * 11 10 8 41 41 H 1.08997 * 111.19040 * 279.18481 * 12 11 10 42 42 H 1.09001 * 110.93420 * 155.28818 * 12 11 10 43 43 H 0.96993 * 119.99998 * 271.47585 * 15 13 12 44 44 H 0.96995 * 119.99853 * 179.97438 * 19 18 16 45 45 H 1.09001 * 109.47133 * 58.54479 * 26 24 10 46 46 H 1.08996 * 109.47751 * 178.54348 * 26 24 10 47 47 H 1.09002 * 109.47135 * 298.54446 * 26 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4423 -0.0006 5 1 3.9329 0.8530 -0.8426 6 6 4.0805 0.8325 1.3065 7 6 4.0800 2.8794 -0.1264 8 6 5.5818 2.8703 -0.2505 9 8 6.1849 1.8182 -0.2390 10 7 6.2549 4.0316 -0.3732 11 6 5.6502 5.3757 -0.4069 12 6 6.7802 6.3282 0.0648 13 6 8.0271 5.6757 -0.5885 14 1 8.9282 5.9151 -0.0238 15 7 8.1614 6.0979 -1.9850 16 6 8.9113 7.2002 -2.2979 17 1 9.4034 7.7585 -1.5151 18 6 9.0389 7.6000 -3.6210 19 7 9.7601 8.6592 -3.9218 20 14 8.1883 6.6339 -4.9748 21 1 6.8286 7.1874 -5.1984 22 1 8.9777 6.7385 -6.2283 23 1 8.0826 5.2080 -4.5738 24 6 7.7132 4.1673 -0.5015 25 1 8.2040 3.7337 0.3698 26 6 8.1916 3.4624 -1.7724 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8932 -0.5139 0.8899 32 1 1.6767 1.9563 0.8900 33 1 1.6767 1.9563 -0.8900 34 1 3.7171 -0.1912 1.3961 35 1 5.1705 0.8328 1.3062 36 1 3.7175 1.4219 2.1485 37 1 3.6451 3.3431 -1.0117 38 1 3.7920 3.4459 0.7592 39 1 5.3385 5.6261 -1.4209 40 1 4.8018 5.4271 0.2753 41 1 6.8649 6.3313 1.1514 42 1 6.6229 7.3375 -0.3156 43 1 7.7191 5.5967 -2.6878 44 1 9.8496 8.9383 -4.8464 45 1 7.6912 3.8956 -2.6385 46 1 9.2693 3.5890 -1.8745 47 1 7.9549 2.4002 -1.7097 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001178316154.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:23 Heat of formation + Delta-G solvation = -41.906016 kcal Electronic energy + Delta-G solvation = -23215.099313 eV Core-core repulsion = 20011.448017 eV Total energy + Delta-G solvation = -3203.651296 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.17910 -38.10642 -36.56381 -34.11258 -32.89784 -31.72241 -30.90093 -29.65743 -27.60803 -26.75314 -25.44338 -23.29258 -22.86523 -21.79786 -20.33870 -19.51070 -18.49432 -17.92931 -16.78645 -16.16448 -15.84012 -15.20337 -14.69332 -14.45231 -14.03522 -13.88764 -13.75617 -13.54948 -13.40815 -12.93834 -12.67653 -12.48639 -12.41461 -12.15787 -11.85338 -11.79844 -11.65890 -11.56689 -11.17011 -11.14727 -11.02999 -10.86866 -10.81861 -10.71642 -10.69397 -10.59317 -10.31581 -10.12913 -9.60917 -9.39698 -9.00987 -8.38442 -7.36004 -5.84232 -3.20521 2.82535 3.19368 3.31769 3.35193 3.40949 4.47453 4.52335 4.60502 4.68399 4.88587 4.94054 4.97542 5.06032 5.16999 5.23259 5.33786 5.35272 5.44405 5.50559 5.51866 5.55012 5.60792 5.61199 5.67549 5.71699 5.73878 5.78000 5.81641 5.94466 5.98871 6.01533 6.09421 6.19367 6.28137 6.30538 6.36971 6.41202 6.49855 6.63771 6.72002 6.81215 7.79297 7.91826 8.34873 8.38873 9.12398 9.84783 10.03946 11.33770 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.025518 B = 0.003694 C = 0.003537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1097.004555 B = 7578.663861 C = 7913.818696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.126 4.126 3 C -0.116 4.116 4 C -0.075 4.075 5 H 0.077 0.923 6 C -0.153 4.153 7 C -0.133 4.133 8 C 0.526 3.474 9 O -0.543 6.543 10 N -0.612 5.612 11 C 0.103 3.897 12 C -0.158 4.158 13 C 0.177 3.823 14 H 0.078 0.922 15 N -0.738 5.738 16 C -0.247 4.247 17 H 0.092 0.908 18 C 0.009 3.991 19 N -0.931 5.931 20 Si 0.878 3.122 21 H -0.284 1.284 22 H -0.290 1.290 23 H -0.276 1.276 24 C 0.124 3.876 25 H 0.074 0.926 26 C -0.152 4.152 27 H 0.051 0.949 28 H 0.052 0.948 29 H 0.052 0.948 30 H 0.061 0.939 31 H 0.064 0.936 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.052 0.948 35 H 0.075 0.925 36 H 0.045 0.955 37 H 0.089 0.911 38 H 0.089 0.911 39 H 0.067 0.933 40 H 0.067 0.933 41 H 0.065 0.935 42 H 0.090 0.910 43 H 0.365 0.635 44 H 0.260 0.740 45 H 0.055 0.945 46 H 0.068 0.932 47 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.923 -13.069 9.981 22.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.163 4.163 3 C -0.153 4.153 4 C -0.094 4.094 5 H 0.095 0.905 6 C -0.210 4.210 7 C -0.173 4.173 8 C 0.315 3.685 9 O -0.422 6.422 10 N -0.346 5.346 11 C -0.020 4.020 12 C -0.200 4.200 13 C 0.066 3.934 14 H 0.096 0.904 15 N -0.382 5.382 16 C -0.376 4.376 17 H 0.110 0.890 18 C -0.187 4.187 19 N -0.578 5.578 20 Si 0.709 3.291 21 H -0.211 1.211 22 H -0.216 1.216 23 H -0.202 1.202 24 C 0.020 3.980 25 H 0.092 0.908 26 C -0.210 4.210 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.079 0.921 31 H 0.083 0.917 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.071 0.929 35 H 0.094 0.906 36 H 0.064 0.936 37 H 0.108 0.892 38 H 0.108 0.892 39 H 0.086 0.914 40 H 0.085 0.915 41 H 0.084 0.916 42 H 0.109 0.891 43 H 0.200 0.800 44 H 0.070 0.930 45 H 0.074 0.926 46 H 0.087 0.913 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -15.470 -13.482 9.969 22.814 hybrid contribution -0.674 -0.364 -1.165 1.395 sum -16.144 -13.847 8.804 23.019 Atomic orbital electron populations 1.21781 0.96107 1.01421 1.01695 1.21568 0.95493 0.97032 1.02247 1.21684 0.94808 0.96891 1.01924 1.20899 0.94290 0.94393 0.99833 0.90480 1.21985 1.03195 0.99961 0.95830 1.21744 0.92336 0.99347 1.03900 1.20294 0.89684 0.82380 0.76178 1.90629 1.70369 1.30221 1.50943 1.48753 1.08080 1.06112 1.71691 1.22361 0.96741 0.81849 1.01062 1.23530 0.96829 0.99891 0.99705 1.21155 0.96026 0.88912 0.87312 0.90389 1.42883 1.60568 1.33148 1.01555 1.19069 1.22991 1.01973 0.93603 0.88992 1.24646 0.99743 0.97547 0.96795 1.69691 1.43710 1.26219 1.18169 0.86664 0.79528 0.80004 0.82932 1.21064 1.21604 1.20228 1.22003 0.79839 0.97730 0.98445 0.90815 1.21978 1.01926 1.00008 0.97110 0.92949 0.92851 0.92843 0.92064 0.91722 0.91989 0.92037 0.92921 0.90642 0.93578 0.89248 0.89230 0.91445 0.91462 0.91611 0.89120 0.80003 0.92965 0.92560 0.91287 0.92349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 9.91 37.15 0.37 -0.68 16 2 C -0.13 -0.99 5.69 -26.74 -0.15 -1.15 16 3 C -0.12 -0.96 4.68 -26.73 -0.13 -1.09 16 4 C -0.08 -0.79 2.04 -90.62 -0.18 -0.97 16 5 H 0.08 0.93 7.95 -51.93 -0.41 0.52 16 6 C -0.15 -1.64 8.69 37.16 0.32 -1.32 16 7 C -0.13 -1.45 4.18 -27.88 -0.12 -1.57 16 8 C 0.53 7.77 7.36 -10.98 -0.08 7.69 16 9 O -0.54 -9.54 13.00 5.56 0.07 -9.46 16 10 N -0.61 -9.22 3.06 -162.88 -0.50 -9.72 16 11 C 0.10 1.39 6.68 -2.41 -0.02 1.38 16 12 C -0.16 -2.38 6.78 -24.46 -0.17 -2.55 16 13 C 0.18 3.18 3.48 -66.09 -0.23 2.95 16 14 H 0.08 1.42 8.09 -51.93 -0.42 1.00 16 15 N -0.74 -16.34 4.35 -51.65 -0.22 -16.56 16 16 C -0.25 -6.58 10.44 -15.06 -0.16 -6.73 16 17 H 0.09 2.62 8.06 -52.48 -0.42 2.19 16 18 C 0.01 0.25 5.50 -17.43 -0.10 0.16 16 19 N -0.93 -28.42 13.97 55.49 0.78 -27.65 16 20 Si 0.88 21.61 27.74 -169.99 -4.71 16.89 16 21 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 22 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 23 H -0.28 -6.47 6.41 56.52 0.36 -6.11 16 24 C 0.12 2.06 3.43 -66.96 -0.23 1.83 16 25 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 26 C -0.15 -2.73 8.51 37.16 0.32 -2.42 16 27 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 29 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.06 0.51 6.57 -51.93 -0.34 0.17 16 32 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 34 H 0.05 0.51 6.57 -51.93 -0.34 0.17 16 35 H 0.07 1.01 5.95 -51.93 -0.31 0.70 16 36 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 37 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.09 0.84 7.85 -51.93 -0.41 0.43 16 39 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 40 H 0.07 0.72 7.48 -51.93 -0.39 0.33 16 41 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 42 H 0.09 1.50 8.14 -51.93 -0.42 1.07 16 43 H 0.36 8.17 3.54 -40.82 -0.14 8.03 16 44 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 45 H 0.06 1.09 6.09 -51.93 -0.32 0.78 16 46 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 47 H 0.06 1.05 6.88 -51.93 -0.36 0.69 16 LS Contribution 359.28 15.07 5.41 5.41 Total: -1.00 -30.39 359.28 -8.25 -38.64 By element: Atomic # 1 Polarization: 15.45 SS G_CDS: -8.53 Total: 6.92 kcal Atomic # 6 Polarization: -3.93 SS G_CDS: -0.55 Total: -4.47 kcal Atomic # 7 Polarization: -53.98 SS G_CDS: 0.05 Total: -53.93 kcal Atomic # 8 Polarization: -9.54 SS G_CDS: 0.07 Total: -9.46 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -4.71 Total: 16.89 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -30.39 -8.25 -38.64 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001178316154.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.264 kcal (2) G-P(sol) polarization free energy of solvation -30.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds