Wall clock time and date at job start Tue Mar 31 2020 05:21:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.46921 * 2 1 4 4 C 1.53000 * 109.46921 * 180.02562 * 3 2 1 5 5 C 1.52996 * 109.47086 * 180.02562 * 4 3 2 6 6 H 1.09001 * 109.47587 * 55.00001 * 5 4 3 7 7 C 1.53007 * 109.47068 * 294.99799 * 5 4 3 8 8 C 1.50701 * 109.47194 * 175.00302 * 5 4 3 9 9 O 1.21278 * 120.00092 * 34.93671 * 8 5 4 10 10 N 1.34780 * 119.99751 * 214.94726 * 8 5 4 11 11 C 1.47423 * 125.65088 * 355.14283 * 10 8 5 12 12 C 1.54907 * 104.83400 * 204.09649 * 11 10 8 13 13 C 1.55160 * 101.58366 * 322.99235 * 12 11 10 14 14 H 1.09002 * 110.86791 * 277.07035 * 13 12 11 15 15 N 1.46495 * 110.72417 * 153.86437 * 13 12 11 16 16 C 1.36941 * 119.99848 * 91.47644 * 15 13 12 17 17 H 1.07994 * 119.99961 * 359.97438 * 16 15 13 18 18 C 1.38810 * 119.99437 * 180.02562 * 16 15 13 19 19 N 1.31610 * 120.00666 * 359.97438 * 18 16 15 20 20 Si 1.86810 * 119.99665 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.46600 * 0.02562 * 20 18 16 22 22 H 1.48491 * 109.47153 * 240.00310 * 20 18 16 23 23 H 1.48496 * 109.46834 * 119.99440 * 20 18 16 24 24 C 1.47026 * 125.64611 * 175.10617 * 10 8 5 25 25 H 1.08996 * 110.00823 * 298.45868 * 24 10 8 26 26 C 1.52996 * 109.88392 * 59.55572 * 24 10 8 27 27 H 1.09009 * 109.46915 * 300.00126 * 1 2 3 28 28 H 1.08995 * 109.47222 * 59.99725 * 1 2 3 29 29 H 1.08997 * 109.47257 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47331 * 240.00102 * 2 1 3 31 31 H 1.09007 * 109.47216 * 119.99802 * 2 1 3 32 32 H 1.08996 * 109.47244 * 60.00422 * 3 2 1 33 33 H 1.08995 * 109.46984 * 299.99513 * 3 2 1 34 34 H 1.08998 * 109.47319 * 59.99594 * 4 3 2 35 35 H 1.09007 * 109.47216 * 299.99802 * 4 3 2 36 36 H 1.08999 * 109.46905 * 305.10050 * 7 5 4 37 37 H 1.08997 * 109.46751 * 65.09725 * 7 5 4 38 38 H 1.09004 * 109.47040 * 185.09607 * 7 5 4 39 39 H 1.09005 * 110.36631 * 322.93494 * 11 10 8 40 40 H 1.08993 * 110.36763 * 85.14550 * 11 10 8 41 41 H 1.08997 * 111.00701 * 204.90911 * 12 11 10 42 42 H 1.09006 * 111.00551 * 81.06546 * 12 11 10 43 43 H 0.96996 * 119.99922 * 271.47983 * 15 13 12 44 44 H 0.96998 * 119.99951 * 0.02562 * 19 18 16 45 45 H 1.08995 * 109.47323 * 177.80916 * 26 24 10 46 46 H 1.09004 * 109.47015 * 297.80894 * 26 24 10 47 47 H 1.09003 * 109.47327 * 57.80505 * 26 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 -0.0006 5 6 4.0799 2.8850 0.0000 6 1 3.6457 3.4236 0.8423 7 6 3.6746 3.5698 -1.3069 8 6 5.5819 2.8868 0.1231 9 8 6.2344 2.0097 -0.4021 10 7 6.2000 3.8630 0.8171 11 6 5.5432 5.0385 1.4172 12 6 6.6619 6.1044 1.5278 13 6 7.8896 5.2304 1.8970 14 1 7.9143 5.0281 2.9678 15 7 9.1326 5.8733 1.4639 16 6 9.8084 6.7027 2.3188 17 1 9.4247 6.8831 3.3120 18 6 10.9859 7.3123 1.9082 19 7 11.4533 7.0928 0.6976 20 14 11.9074 8.4443 3.0740 21 1 11.1791 8.5235 4.3658 22 1 12.0032 9.7997 2.4753 23 1 13.2725 7.9087 3.3081 24 6 7.6408 3.9314 1.1016 25 1 7.9451 3.0693 1.6951 26 6 8.4291 3.9650 -0.2092 27 1 -0.3633 0.5139 0.8901 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 1.8933 -0.5138 -0.8899 31 1 1.8934 -0.5138 0.8900 32 1 1.6767 1.9564 0.8900 33 1 1.6767 1.9563 -0.8900 34 1 3.9329 0.9288 -0.8908 35 1 3.9337 0.9286 0.8892 36 1 4.0324 2.9812 -2.1516 37 1 2.5886 3.6495 -1.3536 38 1 4.1142 4.5666 -1.3462 39 1 4.7412 5.3959 0.7713 40 1 5.1528 4.7921 2.4045 41 1 6.4412 6.8219 2.3181 42 1 6.8150 6.6104 0.5746 43 1 9.4770 5.7115 0.5717 44 1 10.9747 6.5053 0.0921 45 1 9.4932 4.0549 0.0089 46 1 8.2486 3.0450 -0.7653 47 1 8.1069 4.8189 -0.8052 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001178605674.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:07 Heat of formation + Delta-G solvation = -46.644737 kcal Electronic energy + Delta-G solvation = -23027.662380 eV Core-core repulsion = 19823.805597 eV Total energy + Delta-G solvation = -3203.856783 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.24277 -37.95008 -36.34867 -34.47570 -33.55138 -31.59881 -30.75971 -29.07457 -28.43387 -25.40940 -25.15222 -23.66253 -22.96191 -21.87989 -20.99781 -19.40444 -18.51978 -17.60406 -17.08179 -15.88265 -15.64088 -15.40603 -14.98448 -14.49111 -14.26061 -13.89891 -13.71190 -13.39146 -13.32555 -12.97164 -12.71334 -12.63720 -12.38158 -12.21215 -11.89957 -11.88029 -11.74008 -11.52909 -11.28801 -11.22156 -11.09798 -10.87841 -10.83332 -10.68410 -10.63968 -10.31754 -10.18420 -10.06579 -9.39612 -9.22842 -8.96227 -8.41860 -7.10615 -6.15548 -3.16763 2.78720 3.13714 3.49260 3.55769 3.64931 4.41209 4.52206 4.62627 4.65778 4.84275 4.87932 4.98602 4.98870 5.12750 5.22287 5.28805 5.32971 5.41738 5.47292 5.49399 5.53740 5.55177 5.61629 5.65116 5.70438 5.71733 5.76714 5.81939 5.93545 5.94818 5.97829 6.00393 6.11853 6.14158 6.18944 6.23672 6.46388 6.49818 6.64625 6.71149 6.89829 7.75958 7.77642 8.36280 8.70270 9.15644 10.02066 10.16432 11.32385 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.044216 B = 0.003053 C = 0.002981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 633.107281 B = 9169.959958 C = 9389.390196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.126 4.126 3 C -0.120 4.120 4 C -0.102 4.102 5 C -0.106 4.106 6 H 0.087 0.913 7 C -0.140 4.140 8 C 0.530 3.470 9 O -0.543 6.543 10 N -0.610 5.610 11 C 0.098 3.902 12 C -0.153 4.153 13 C 0.179 3.821 14 H 0.066 0.934 15 N -0.728 5.728 16 C -0.336 4.336 17 H 0.066 0.934 18 C -0.043 4.043 19 N -0.942 5.942 20 Si 1.086 2.914 21 H -0.294 1.294 22 H -0.293 1.293 23 H -0.293 1.293 24 C 0.125 3.875 25 H 0.070 0.930 26 C -0.158 4.158 27 H 0.053 0.947 28 H 0.053 0.947 29 H 0.052 0.948 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.065 0.935 34 H 0.074 0.926 35 H 0.063 0.937 36 H 0.063 0.937 37 H 0.067 0.933 38 H 0.058 0.942 39 H 0.068 0.932 40 H 0.065 0.935 41 H 0.076 0.924 42 H 0.072 0.928 43 H 0.374 0.626 44 H 0.256 0.744 45 H 0.073 0.927 46 H 0.063 0.937 47 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.064 -9.001 -0.489 22.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.163 4.163 3 C -0.157 4.157 4 C -0.140 4.140 5 C -0.127 4.127 6 H 0.105 0.895 7 C -0.198 4.198 8 C 0.319 3.681 9 O -0.421 6.421 10 N -0.344 5.344 11 C -0.025 4.025 12 C -0.194 4.194 13 C 0.067 3.933 14 H 0.084 0.916 15 N -0.372 5.372 16 C -0.466 4.466 17 H 0.085 0.915 18 C -0.241 4.241 19 N -0.587 5.587 20 Si 0.917 3.083 21 H -0.221 1.221 22 H -0.220 1.220 23 H -0.220 1.220 24 C 0.021 3.979 25 H 0.088 0.912 26 C -0.216 4.216 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.071 0.929 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.084 0.916 34 H 0.092 0.908 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.086 0.914 38 H 0.077 0.923 39 H 0.087 0.913 40 H 0.083 0.917 41 H 0.095 0.905 42 H 0.091 0.909 43 H 0.211 0.789 44 H 0.067 0.933 45 H 0.092 0.908 46 H 0.082 0.918 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -19.430 -8.503 -0.421 21.213 hybrid contribution -1.330 -0.860 -0.305 1.613 sum -20.760 -9.363 -0.726 22.785 Atomic orbital electron populations 1.21777 0.95987 1.01486 1.01730 1.21532 0.95665 0.96977 1.02167 1.21668 0.95035 0.96850 1.02160 1.21456 0.94956 0.94265 1.03314 1.21287 0.92017 0.98925 1.00497 0.89475 1.21745 1.01657 1.00500 0.95876 1.20303 0.89793 0.80491 0.77541 1.90659 1.67301 1.37390 1.46729 1.48655 1.08946 1.23279 1.53502 1.22366 0.96527 0.86081 0.97543 1.23527 0.95868 0.97349 1.02673 1.21115 0.86882 0.88923 0.96361 0.91579 1.42656 1.23779 1.54894 1.15880 1.20118 1.06625 1.23130 0.96766 0.91550 1.25798 0.96026 1.02029 1.00257 1.70819 1.41648 1.39601 1.06626 0.83138 0.75624 0.75794 0.73724 1.22081 1.21994 1.21974 1.21874 0.79413 0.99498 0.97093 0.91225 1.22006 1.00759 1.01999 0.96841 0.92812 0.92798 0.92899 0.91960 0.92049 0.92019 0.91638 0.90764 0.91826 0.91821 0.91405 0.92295 0.91316 0.91703 0.90530 0.90922 0.78890 0.93313 0.90841 0.91757 0.92823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 9.91 37.16 0.37 -0.61 16 2 C -0.13 -0.94 5.93 -26.73 -0.16 -1.10 16 3 C -0.12 -0.94 4.97 -26.73 -0.13 -1.07 16 4 C -0.10 -1.05 4.26 -26.73 -0.11 -1.16 16 5 C -0.11 -1.17 2.16 -91.77 -0.20 -1.37 16 6 H 0.09 0.83 7.13 -51.93 -0.37 0.46 16 7 C -0.14 -1.38 8.80 37.16 0.33 -1.06 16 8 C 0.53 8.18 6.66 -10.98 -0.07 8.11 16 9 O -0.54 -10.26 15.12 5.56 0.08 -10.17 16 10 N -0.61 -9.48 3.08 -163.02 -0.50 -9.99 16 11 C 0.10 1.29 6.17 -2.53 -0.02 1.27 16 12 C -0.15 -2.51 6.77 -24.58 -0.17 -2.68 16 13 C 0.18 3.50 3.49 -66.10 -0.23 3.26 16 14 H 0.07 1.30 8.09 -51.93 -0.42 0.88 16 15 N -0.73 -17.71 4.93 -51.65 -0.25 -17.96 16 16 C -0.34 -9.16 9.96 -15.06 -0.15 -9.31 16 17 H 0.07 1.78 7.83 -52.49 -0.41 1.37 16 18 C -0.04 -1.24 5.50 -17.43 -0.10 -1.33 16 19 N -0.94 -28.83 13.70 55.49 0.76 -28.07 16 20 Si 1.09 25.62 29.92 -169.99 -5.09 20.54 16 21 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 22 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 23 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 24 C 0.13 2.27 3.51 -66.95 -0.23 2.03 16 25 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 26 C -0.16 -3.02 7.92 37.16 0.29 -2.73 16 27 H 0.05 0.33 8.14 -51.92 -0.42 -0.09 16 28 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 33 H 0.06 0.48 6.68 -51.93 -0.35 0.13 16 34 H 0.07 0.86 8.02 -51.93 -0.42 0.44 16 35 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.07 0.52 6.82 -51.93 -0.35 0.16 16 38 H 0.06 0.61 7.99 -51.93 -0.41 0.19 16 39 H 0.07 0.76 7.51 -51.93 -0.39 0.37 16 40 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 42 H 0.07 1.31 8.14 -51.93 -0.42 0.88 16 43 H 0.37 9.42 3.89 -40.82 -0.16 9.26 16 44 H 0.26 7.73 6.77 -40.82 -0.28 7.45 16 45 H 0.07 1.51 6.76 -51.93 -0.35 1.16 16 46 H 0.06 1.24 6.63 -51.93 -0.34 0.90 16 47 H 0.05 1.04 8.03 -51.93 -0.42 0.62 16 LS Contribution 363.94 15.07 5.48 5.48 Total: -1.00 -31.70 363.94 -8.63 -40.33 By element: Atomic # 1 Polarization: 16.12 SS G_CDS: -8.54 Total: 7.58 kcal Atomic # 6 Polarization: -7.16 SS G_CDS: -0.58 Total: -7.74 kcal Atomic # 7 Polarization: -56.02 SS G_CDS: 0.00 Total: -56.02 kcal Atomic # 8 Polarization: -10.26 SS G_CDS: 0.08 Total: -10.17 kcal Atomic # 14 Polarization: 25.62 SS G_CDS: -5.09 Total: 20.54 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -31.70 -8.63 -40.33 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001178605674.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.311 kcal (2) G-P(sol) polarization free energy of solvation -31.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds