Wall clock time and date at job start Tue Mar 31 2020 06:11:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52992 * 109.47099 * 2 1 4 4 C 1.53001 * 109.47152 * 185.15854 * 3 2 1 5 5 H 1.09001 * 109.47417 * 54.27822 * 4 3 2 6 6 C 1.53008 * 109.46690 * 294.28033 * 4 3 2 7 7 C 1.52998 * 109.46980 * 304.63127 * 6 4 3 8 8 C 1.50698 * 109.47341 * 174.28438 * 4 3 2 9 9 O 1.21279 * 120.00312 * 16.80878 * 8 4 3 10 10 N 1.34784 * 120.00075 * 196.81789 * 8 4 3 11 11 C 1.47422 * 125.64512 * 354.51133 * 10 8 4 12 12 C 1.54912 * 104.82947 * 204.16651 * 11 10 8 13 13 C 1.55164 * 101.57790 * 322.98638 * 12 11 10 14 14 H 1.08998 * 110.86915 * 277.06794 * 13 12 11 15 15 N 1.46503 * 110.71647 * 153.86789 * 13 12 11 16 16 C 1.36936 * 120.00106 * 91.47933 * 15 13 12 17 17 H 1.08001 * 119.99728 * 359.97438 * 16 15 13 18 18 C 1.38810 * 120.00317 * 180.02562 * 16 15 13 19 19 N 1.31622 * 119.99781 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 120.00369 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47307 * 179.97438 * 20 18 16 22 22 H 1.48507 * 109.46674 * 299.99675 * 20 18 16 23 23 H 1.48499 * 109.47205 * 59.99215 * 20 18 16 24 24 C 1.47015 * 125.64742 * 174.54828 * 10 8 4 25 25 H 1.08998 * 110.01467 * 298.39348 * 24 10 8 26 26 C 1.52998 * 109.88152 * 59.48977 * 24 10 8 27 27 H 1.08996 * 109.47262 * 60.00232 * 1 2 3 28 28 H 1.09001 * 109.46841 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46884 * 300.00148 * 1 2 3 30 30 H 1.09001 * 109.46884 * 239.99851 * 2 1 3 31 31 H 1.08998 * 109.46747 * 119.99728 * 2 1 3 32 32 H 1.09003 * 109.47778 * 65.15167 * 3 2 1 33 33 H 1.09004 * 109.47216 * 305.15183 * 3 2 1 34 34 H 1.08994 * 109.47228 * 64.63585 * 6 4 3 35 35 H 1.09004 * 109.46881 * 184.63332 * 6 4 3 36 36 H 1.08997 * 109.47349 * 305.62823 * 7 6 4 37 37 H 1.08999 * 109.46825 * 65.63228 * 7 6 4 38 38 H 1.09000 * 109.47037 * 185.62912 * 7 6 4 39 39 H 1.09007 * 110.36659 * 322.99959 * 11 10 8 40 40 H 1.08995 * 110.36714 * 85.32534 * 11 10 8 41 41 H 1.08998 * 111.00204 * 204.91872 * 12 11 10 42 42 H 1.08994 * 111.00881 * 81.06165 * 12 11 10 43 43 H 0.97001 * 120.00195 * 271.47568 * 15 13 12 44 44 H 0.96997 * 119.99852 * 0.02562 * 19 18 16 45 45 H 1.09003 * 109.47239 * 177.80274 * 26 24 10 46 46 H 1.08993 * 109.47550 * 297.80476 * 26 24 10 47 47 H 1.08999 * 109.47207 * 57.80570 * 26 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5645 1.4444 -0.1297 5 1 3.8551 0.8701 -1.0094 6 6 4.1833 0.8127 1.1190 7 6 3.6832 1.5482 2.3638 8 6 4.0549 2.8623 -0.2708 9 8 3.3310 3.7873 0.0314 10 7 5.2980 3.1027 -0.7331 11 6 6.3177 2.0797 -1.0278 12 6 7.6713 2.8242 -0.9119 13 6 7.3138 4.2139 -1.5023 14 1 7.3644 4.1979 -2.5910 15 7 8.1958 5.2500 -0.9593 16 6 9.3553 5.5733 -1.6122 17 1 9.6197 5.0641 -2.5272 18 6 10.1913 6.5546 -1.0975 19 7 9.8692 7.1748 0.0178 20 14 11.7726 6.9961 -1.9885 21 1 12.4806 8.0654 -1.2399 22 1 12.6418 5.7954 -2.0784 23 1 11.4521 7.4787 -3.3559 24 6 5.8616 4.4285 -1.0262 25 1 5.2824 4.9150 -1.8110 26 6 5.8505 5.2897 0.2383 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8934 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.7540 1.9290 0.9325 33 1 1.6033 1.9822 -0.8403 34 1 3.8946 -0.2367 1.1764 35 1 5.2694 0.8882 1.0641 36 1 3.8836 2.6147 2.2608 37 1 2.6105 1.3890 2.4734 38 1 4.1992 1.1649 3.2441 39 1 6.2659 1.2712 -0.2985 40 1 6.1840 1.6904 -2.0371 41 1 8.4399 2.3324 -1.5082 42 1 7.9821 2.9102 0.1292 43 1 7.9585 5.7071 -0.1374 44 1 9.0479 6.9458 0.4803 45 1 6.3052 6.2568 0.0233 46 1 4.8223 5.4371 0.5686 47 1 6.4163 4.7890 1.0240 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001179798756.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:27 Heat of formation + Delta-G solvation = -40.672450 kcal Electronic energy + Delta-G solvation = -23599.150073 eV Core-core repulsion = 20395.552268 eV Total energy + Delta-G solvation = -3203.597805 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.38447 -38.06998 -36.25144 -34.47576 -33.11972 -31.60305 -30.76161 -29.20467 -28.40076 -25.48257 -25.00375 -23.50906 -23.14817 -22.27479 -20.62537 -19.31484 -18.44964 -17.58126 -16.88733 -16.00645 -15.82783 -15.33446 -14.91318 -14.69001 -14.20053 -13.73500 -13.64134 -13.43586 -13.24590 -12.93681 -12.73292 -12.50275 -12.28810 -12.20970 -11.97562 -11.78753 -11.73542 -11.40790 -11.27812 -11.15807 -11.05000 -10.88010 -10.73700 -10.64986 -10.54474 -10.33783 -10.16876 -9.99873 -9.36952 -9.21899 -8.96143 -8.39845 -7.10711 -6.15168 -3.16372 2.80983 3.15516 3.49310 3.52524 3.70285 4.44271 4.54302 4.63209 4.69923 4.91780 4.96083 4.98295 5.00244 5.07844 5.28467 5.30855 5.41171 5.46515 5.47888 5.49348 5.57619 5.61591 5.62819 5.70174 5.71603 5.77105 5.84007 5.91619 5.96236 5.98390 6.04561 6.10727 6.11855 6.16256 6.23671 6.32594 6.46974 6.50410 6.65441 6.72063 6.90435 7.75450 7.78806 8.38066 8.70410 9.15827 10.02264 10.16669 11.32590 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.039162 B = 0.003490 C = 0.003442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 714.802880 B = 8020.884691 C = 8133.735203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.124 4.124 3 C -0.103 4.103 4 C -0.104 4.104 5 H 0.089 0.911 6 C -0.116 4.116 7 C -0.157 4.157 8 C 0.532 3.468 9 O -0.542 6.542 10 N -0.610 5.610 11 C 0.095 3.905 12 C -0.153 4.153 13 C 0.179 3.821 14 H 0.066 0.934 15 N -0.728 5.728 16 C -0.336 4.336 17 H 0.065 0.935 18 C -0.043 4.043 19 N -0.941 5.941 20 Si 1.081 2.919 21 H -0.285 1.285 22 H -0.295 1.295 23 H -0.295 1.295 24 C 0.126 3.874 25 H 0.069 0.931 26 C -0.158 4.158 27 H 0.053 0.947 28 H 0.052 0.948 29 H 0.054 0.946 30 H 0.060 0.940 31 H 0.063 0.937 32 H 0.076 0.924 33 H 0.065 0.935 34 H 0.073 0.927 35 H 0.069 0.931 36 H 0.059 0.941 37 H 0.059 0.941 38 H 0.053 0.947 39 H 0.072 0.928 40 H 0.064 0.936 41 H 0.076 0.924 42 H 0.072 0.928 43 H 0.374 0.626 44 H 0.255 0.745 45 H 0.072 0.928 46 H 0.064 0.936 47 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.862 -16.465 0.024 21.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.162 4.162 3 C -0.141 4.141 4 C -0.125 4.125 5 H 0.107 0.893 6 C -0.153 4.153 7 C -0.214 4.214 8 C 0.321 3.679 9 O -0.419 6.419 10 N -0.344 5.344 11 C -0.028 4.028 12 C -0.194 4.194 13 C 0.067 3.933 14 H 0.084 0.916 15 N -0.372 5.372 16 C -0.467 4.467 17 H 0.083 0.917 18 C -0.241 4.241 19 N -0.586 5.586 20 Si 0.911 3.089 21 H -0.210 1.210 22 H -0.222 1.222 23 H -0.222 1.222 24 C 0.022 3.978 25 H 0.087 0.913 26 C -0.216 4.216 27 H 0.073 0.927 28 H 0.071 0.929 29 H 0.073 0.927 30 H 0.079 0.921 31 H 0.082 0.918 32 H 0.095 0.905 33 H 0.083 0.917 34 H 0.092 0.908 35 H 0.087 0.913 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.072 0.928 39 H 0.090 0.910 40 H 0.082 0.918 41 H 0.094 0.906 42 H 0.091 0.909 43 H 0.211 0.789 44 H 0.066 0.934 45 H 0.091 0.909 46 H 0.083 0.917 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -12.885 -15.045 0.053 19.808 hybrid contribution -1.278 -1.020 0.068 1.636 sum -14.162 -16.065 0.121 21.417 Atomic orbital electron populations 1.21762 0.95860 1.01359 1.01958 1.21572 0.95875 0.96764 1.01964 1.21496 0.92371 0.96568 1.03647 1.21374 0.97429 0.93552 1.00173 0.89289 1.21552 1.00554 0.99736 0.93505 1.21859 1.01292 1.01248 0.96972 1.20241 0.80059 0.91204 0.76406 1.90659 1.55466 1.46181 1.49634 1.48612 1.12451 1.08556 1.64744 1.22461 0.88710 0.91486 1.00191 1.23527 0.94437 0.98787 1.02678 1.21113 0.87100 0.88375 0.96686 0.91615 1.42645 1.22910 1.42862 1.28760 1.20052 0.99041 1.20211 1.07355 0.91658 1.25797 1.03796 0.95720 0.98749 1.70890 1.26232 1.43926 1.17537 0.83233 0.75023 0.76040 0.74575 1.21022 1.22234 1.22220 1.21862 0.95559 0.82864 0.97540 0.91271 1.22005 1.02211 1.00274 0.97095 0.92749 0.92902 0.92717 0.92134 0.91799 0.90505 0.91665 0.90847 0.91275 0.92156 0.92202 0.92754 0.91004 0.91764 0.90573 0.90938 0.78878 0.93389 0.90900 0.91728 0.92838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 9.91 37.16 0.37 -0.77 16 2 C -0.12 -0.99 5.58 -26.73 -0.15 -1.14 16 3 C -0.10 -1.08 3.71 -26.73 -0.10 -1.18 16 4 C -0.10 -1.15 1.85 -91.77 -0.17 -1.32 16 5 H 0.09 0.86 7.89 -51.93 -0.41 0.45 16 6 C -0.12 -1.14 5.21 -26.73 -0.14 -1.28 16 7 C -0.16 -1.69 9.15 37.16 0.34 -1.35 16 8 C 0.53 8.08 5.83 -10.98 -0.06 8.02 16 9 O -0.54 -10.00 14.57 5.56 0.08 -9.92 16 10 N -0.61 -9.38 3.08 -163.02 -0.50 -9.89 16 11 C 0.09 1.24 6.43 -2.53 -0.02 1.22 16 12 C -0.15 -2.51 6.77 -24.58 -0.17 -2.68 16 13 C 0.18 3.49 3.49 -66.09 -0.23 3.26 16 14 H 0.07 1.30 8.09 -51.93 -0.42 0.88 16 15 N -0.73 -17.70 4.93 -51.65 -0.25 -17.95 16 16 C -0.34 -9.17 9.96 -15.06 -0.15 -9.32 16 17 H 0.07 1.74 7.83 -52.49 -0.41 1.33 16 18 C -0.04 -1.22 5.50 -17.43 -0.10 -1.32 16 19 N -0.94 -28.79 13.70 55.49 0.76 -28.03 16 20 Si 1.08 25.49 29.92 -169.99 -5.09 20.40 16 21 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 22 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 23 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 24 C 0.13 2.27 3.51 -66.96 -0.24 2.03 16 25 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 26 C -0.16 -3.01 7.92 37.16 0.29 -2.71 16 27 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.06 0.47 6.95 -51.93 -0.36 0.11 16 32 H 0.08 0.89 6.11 -51.93 -0.32 0.57 16 33 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 34 H 0.07 0.57 6.94 -51.93 -0.36 0.21 16 35 H 0.07 0.71 5.80 -51.93 -0.30 0.40 16 36 H 0.06 0.82 6.99 -51.93 -0.36 0.46 16 37 H 0.06 0.59 6.56 -51.93 -0.34 0.25 16 38 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 39 H 0.07 0.79 5.49 -51.93 -0.28 0.51 16 40 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 41 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 42 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 43 H 0.37 9.42 3.89 -40.82 -0.16 9.26 16 44 H 0.25 7.70 6.77 -40.82 -0.28 7.43 16 45 H 0.07 1.50 6.76 -51.93 -0.35 1.15 16 46 H 0.06 1.24 6.61 -51.93 -0.34 0.90 16 47 H 0.05 1.03 8.03 -51.93 -0.42 0.61 16 LS Contribution 354.48 15.07 5.34 5.34 Total: -1.00 -31.48 354.48 -8.31 -39.79 By element: Atomic # 1 Polarization: 16.92 SS G_CDS: -8.14 Total: 8.78 kcal Atomic # 6 Polarization: -8.01 SS G_CDS: -0.51 Total: -8.52 kcal Atomic # 7 Polarization: -55.87 SS G_CDS: 0.00 Total: -55.87 kcal Atomic # 8 Polarization: -10.00 SS G_CDS: 0.08 Total: -9.92 kcal Atomic # 14 Polarization: 25.49 SS G_CDS: -5.09 Total: 20.40 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -31.48 -8.31 -39.79 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001179798756.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.884 kcal (2) G-P(sol) polarization free energy of solvation -31.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds