Wall clock time and date at job start Tue Mar 31 2020 06:11:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.47068 * 2 1 4 4 C 1.52999 * 109.46567 * 179.97438 * 3 2 1 5 5 H 1.09001 * 109.47244 * 304.99509 * 4 3 2 6 6 C 1.52996 * 109.47288 * 65.00294 * 4 3 2 7 7 C 1.53003 * 109.47279 * 185.45996 * 6 4 3 8 8 C 1.50702 * 109.46678 * 185.00078 * 4 3 2 9 9 O 1.21285 * 120.00311 * 274.88360 * 8 4 3 10 10 N 1.34780 * 119.99852 * 94.61083 * 8 4 3 11 11 C 1.47419 * 125.64821 * 354.99483 * 10 8 4 12 12 C 1.55132 * 104.72223 * 155.82176 * 11 10 8 13 13 C 1.55158 * 101.48813 * 37.29042 * 12 11 10 14 14 H 1.08996 * 110.71868 * 205.97215 * 13 12 11 15 15 N 1.46497 * 110.71839 * 82.69943 * 13 12 11 16 16 C 1.36940 * 120.00217 * 91.47484 * 15 13 12 17 17 H 1.08003 * 119.99665 * 0.02562 * 16 15 13 18 18 C 1.38815 * 119.99958 * 179.97438 * 16 15 13 19 19 N 1.31613 * 120.00339 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 119.99759 * 180.02562 * 18 16 15 21 21 H 1.48507 * 109.47002 * 0.02562 * 20 18 16 22 22 H 1.48495 * 109.47192 * 120.00282 * 20 18 16 23 23 H 1.48499 * 109.47075 * 240.00180 * 20 18 16 24 24 C 1.47025 * 125.64708 * 175.30499 * 10 8 4 25 25 H 1.09009 * 109.88264 * 300.59221 * 24 10 8 26 26 C 1.52999 * 109.88336 * 61.60062 * 24 10 8 27 27 H 1.09003 * 109.47259 * 300.00119 * 1 2 3 28 28 H 1.09001 * 109.47037 * 60.00172 * 1 2 3 29 29 H 1.08996 * 109.47386 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.46829 * 239.99973 * 2 1 3 31 31 H 1.09000 * 109.46898 * 120.00360 * 2 1 3 32 32 H 1.08991 * 109.46970 * 60.00123 * 3 2 1 33 33 H 1.09001 * 109.47052 * 299.99819 * 3 2 1 34 34 H 1.09005 * 109.47136 * 305.45593 * 6 4 3 35 35 H 1.09000 * 109.47609 * 65.46099 * 6 4 3 36 36 H 1.09003 * 109.47018 * 54.95316 * 7 6 4 37 37 H 1.09000 * 109.47498 * 174.95262 * 7 6 4 38 38 H 1.09004 * 109.47232 * 294.95557 * 7 6 4 39 39 H 1.09009 * 110.36761 * 274.74699 * 11 10 8 40 40 H 1.08997 * 110.36804 * 37.07027 * 11 10 8 41 41 H 1.09003 * 111.18670 * 279.18735 * 12 11 10 42 42 H 1.09003 * 110.93943 * 155.29131 * 12 11 10 43 43 H 0.97003 * 119.99866 * 271.48095 * 15 13 12 44 44 H 0.96993 * 120.00365 * 179.97438 * 19 18 16 45 45 H 1.08996 * 109.46709 * 58.54674 * 26 24 10 46 46 H 1.09006 * 109.46759 * 178.54811 * 26 24 10 47 47 H 1.08998 * 109.47493 * 298.54479 * 26 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 1 3.9330 0.8531 0.8427 6 6 4.0805 0.8326 -1.3064 7 6 5.6044 0.7072 -1.2497 8 6 4.0723 2.8578 0.1245 9 8 4.1906 3.5482 -0.8656 10 7 4.3849 3.3583 1.3363 11 6 4.1864 2.6729 2.6262 12 6 5.2180 3.3265 3.5828 13 6 5.1790 4.8055 3.1154 14 1 6.1215 5.3054 3.3385 15 7 4.0557 5.5147 3.7329 16 6 4.2327 6.1779 4.9178 17 1 5.2007 6.1785 5.3969 18 6 3.1684 6.8504 5.5026 19 7 1.9889 6.8501 4.9185 20 14 3.4101 7.7556 7.1186 21 1 4.8185 7.6046 7.5647 22 1 3.1029 9.1962 6.9298 23 1 2.5013 7.1862 8.1457 24 6 4.9744 4.6809 1.5909 25 1 5.9325 4.7648 1.0779 26 6 4.0250 5.7766 1.1020 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 1.6767 1.9563 0.8899 33 1 1.6767 1.9563 -0.8900 34 1 3.6396 -0.1548 -1.4433 35 1 3.7997 1.4748 -2.1411 36 1 5.8895 0.1394 -0.3639 37 1 5.9600 0.1915 -2.1417 38 1 6.0493 1.7012 -1.2029 39 1 3.1719 2.8356 2.9902 40 1 4.3871 1.6064 2.5239 41 1 6.2108 2.8987 3.4433 42 1 4.8983 3.2362 4.6210 43 1 3.1864 5.5145 3.3024 44 1 1.2452 7.3197 5.3273 45 1 3.0670 5.6819 1.6132 46 1 4.4568 6.7541 1.3174 47 1 3.8750 5.6745 0.0273 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001179798907.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:31 Heat of formation + Delta-G solvation = -45.376565 kcal Electronic energy + Delta-G solvation = -23737.521417 eV Core-core repulsion = 20533.719626 eV Total energy + Delta-G solvation = -3203.801791 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.17559 -37.88487 -36.02135 -33.94847 -33.07699 -31.58498 -30.73661 -29.46186 -28.49349 -25.18867 -24.70578 -23.58929 -23.01773 -21.90343 -20.82158 -19.34984 -18.26470 -17.55960 -16.82469 -15.96486 -15.24871 -15.09260 -14.73391 -14.26328 -14.08615 -13.70189 -13.43442 -13.27603 -13.20566 -13.08996 -12.62320 -12.52303 -12.24120 -12.03004 -11.79434 -11.69671 -11.42274 -11.30849 -11.12042 -11.00511 -10.92028 -10.83602 -10.80737 -10.64641 -10.62019 -10.43708 -10.19804 -10.01451 -9.62355 -9.23317 -8.97026 -8.23499 -7.03277 -5.82731 -3.12099 2.94172 3.33099 3.39769 3.45852 3.47920 4.53827 4.56516 4.66552 4.83388 4.99646 5.06238 5.09706 5.15615 5.26112 5.36166 5.41706 5.48775 5.58251 5.62155 5.66790 5.67267 5.69057 5.76448 5.78735 5.82869 5.87245 5.96372 6.02325 6.04931 6.12441 6.16137 6.19489 6.25175 6.29645 6.38879 6.44380 6.54601 6.65162 6.76837 6.91720 7.06373 7.66031 7.94092 8.35578 8.52698 9.47379 10.02966 10.38052 11.39635 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.020476 B = 0.004373 C = 0.003987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1367.155515 B = 6400.709516 C = 7020.684379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.122 4.122 3 C -0.109 4.109 4 C -0.104 4.104 5 H 0.087 0.913 6 C -0.109 4.109 7 C -0.153 4.153 8 C 0.533 3.467 9 O -0.547 6.547 10 N -0.608 5.608 11 C 0.105 3.895 12 C -0.160 4.160 13 C 0.172 3.828 14 H 0.069 0.931 15 N -0.713 5.713 16 C -0.243 4.243 17 H 0.072 0.928 18 C -0.010 4.010 19 N -0.930 5.930 20 Si 0.906 3.094 21 H -0.280 1.280 22 H -0.292 1.292 23 H -0.292 1.292 24 C 0.125 3.875 25 H 0.067 0.933 26 C -0.148 4.148 27 H 0.056 0.944 28 H 0.053 0.947 29 H 0.052 0.948 30 H 0.064 0.936 31 H 0.062 0.938 32 H 0.068 0.932 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.074 0.926 36 H 0.051 0.949 37 H 0.054 0.946 38 H 0.056 0.944 39 H 0.071 0.929 40 H 0.064 0.936 41 H 0.060 0.940 42 H 0.086 0.914 43 H 0.388 0.612 44 H 0.255 0.745 45 H 0.064 0.936 46 H 0.064 0.936 47 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.847 -14.808 -9.204 17.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.159 4.159 3 C -0.147 4.147 4 C -0.125 4.125 5 H 0.105 0.895 6 C -0.147 4.147 7 C -0.211 4.211 8 C 0.321 3.679 9 O -0.425 6.425 10 N -0.341 5.341 11 C -0.017 4.017 12 C -0.201 4.201 13 C 0.059 3.941 14 H 0.087 0.913 15 N -0.355 5.355 16 C -0.374 4.374 17 H 0.090 0.910 18 C -0.206 4.206 19 N -0.578 5.578 20 Si 0.737 3.263 21 H -0.205 1.205 22 H -0.219 1.219 23 H -0.219 1.219 24 C 0.022 3.978 25 H 0.086 0.914 26 C -0.207 4.207 27 H 0.075 0.925 28 H 0.073 0.927 29 H 0.071 0.929 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.087 0.913 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.093 0.907 36 H 0.070 0.930 37 H 0.073 0.927 38 H 0.075 0.925 39 H 0.089 0.911 40 H 0.082 0.918 41 H 0.079 0.921 42 H 0.105 0.895 43 H 0.225 0.775 44 H 0.065 0.935 45 H 0.083 0.917 46 H 0.083 0.917 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 2.935 -14.352 -9.636 17.534 hybrid contribution -0.259 0.483 0.979 1.122 sum 2.676 -13.869 -8.657 16.566 Atomic orbital electron populations 1.21776 0.95759 1.01439 1.02117 1.21566 0.95936 0.96350 1.02077 1.21519 0.92449 0.97500 1.03206 1.21406 0.97146 0.93707 1.00282 0.89496 1.21473 0.95917 1.00649 0.96623 1.21795 0.95993 1.02024 1.01265 1.20188 0.77199 0.88750 0.81745 1.90642 1.54286 1.60982 1.36591 1.48699 1.61809 1.17844 1.05769 1.22343 1.00509 0.95693 0.83176 1.23556 0.97195 0.99504 0.99865 1.21187 0.93304 0.91081 0.88484 0.91327 1.42560 1.08332 1.59866 1.24769 1.19294 0.95806 1.24581 0.97725 0.90995 1.24735 0.95684 1.01085 0.99096 1.69665 1.00749 1.47450 1.39963 0.86134 0.77238 0.79406 0.83474 1.20526 1.21882 1.21899 1.21995 0.96096 0.82316 0.97422 0.91450 1.21921 1.00316 0.97898 1.00536 0.92506 0.92741 0.92860 0.91712 0.91925 0.91298 0.91181 0.91220 0.90715 0.93012 0.92734 0.92462 0.91110 0.91804 0.92095 0.89518 0.77531 0.93478 0.91673 0.91734 0.92626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 9.91 37.16 0.37 -0.99 16 2 C -0.12 -1.11 5.70 -26.73 -0.15 -1.27 16 3 C -0.11 -1.26 4.67 -26.73 -0.12 -1.38 16 4 C -0.10 -1.27 1.82 -91.77 -0.17 -1.44 16 5 H 0.09 0.96 6.40 -51.93 -0.33 0.62 16 6 C -0.11 -1.20 5.04 -26.73 -0.13 -1.34 16 7 C -0.15 -1.66 9.65 37.16 0.36 -1.30 16 8 C 0.53 8.59 5.81 -10.98 -0.06 8.52 16 9 O -0.55 -10.51 14.85 5.55 0.08 -10.43 16 10 N -0.61 -9.92 3.06 -162.87 -0.50 -10.42 16 11 C 0.11 1.58 6.71 -2.41 -0.02 1.56 16 12 C -0.16 -2.56 6.78 -24.46 -0.17 -2.73 16 13 C 0.17 3.25 3.48 -66.10 -0.23 3.02 16 14 H 0.07 1.30 8.09 -51.93 -0.42 0.88 16 15 N -0.71 -16.82 4.54 -51.65 -0.23 -17.06 16 16 C -0.24 -6.40 9.96 -15.06 -0.15 -6.55 16 17 H 0.07 1.84 7.83 -52.48 -0.41 1.43 16 18 C -0.01 -0.27 5.50 -17.43 -0.10 -0.36 16 19 N -0.93 -27.28 13.06 55.49 0.72 -26.56 16 20 Si 0.91 21.76 29.55 -169.99 -5.02 16.73 16 21 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 22 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 23 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 24 C 0.13 2.25 3.46 -66.95 -0.23 2.01 16 25 H 0.07 1.17 8.14 -51.92 -0.42 0.75 16 26 C -0.15 -2.90 8.51 37.16 0.32 -2.59 16 27 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.54 6.45 -51.93 -0.34 0.20 16 31 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.07 0.62 6.33 -51.93 -0.33 0.30 16 35 H 0.07 0.94 7.66 -51.93 -0.40 0.54 16 36 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 37 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.06 0.75 7.41 -51.93 -0.38 0.36 16 39 H 0.07 1.17 8.14 -51.92 -0.42 0.74 16 40 H 0.06 0.78 6.62 -51.93 -0.34 0.43 16 41 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 42 H 0.09 1.51 8.14 -51.93 -0.42 1.08 16 43 H 0.39 9.89 5.67 -40.82 -0.23 9.66 16 44 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 45 H 0.06 1.41 6.20 -51.93 -0.32 1.09 16 46 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 47 H 0.05 1.09 6.73 -51.93 -0.35 0.75 16 LS Contribution 362.92 15.07 5.47 5.47 Total: -1.00 -29.70 362.92 -8.46 -38.16 By element: Atomic # 1 Polarization: 17.41 SS G_CDS: -8.49 Total: 8.93 kcal Atomic # 6 Polarization: -4.34 SS G_CDS: -0.49 Total: -4.83 kcal Atomic # 7 Polarization: -54.02 SS G_CDS: -0.01 Total: -54.03 kcal Atomic # 8 Polarization: -10.51 SS G_CDS: 0.08 Total: -10.43 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -29.70 -8.46 -38.16 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001179798907.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.215 kcal (2) G-P(sol) polarization free energy of solvation -29.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds