Wall clock time and date at job start Tue Mar 31 2020 06:11:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.47068 * 2 1 4 4 C 1.52999 * 109.46567 * 179.97438 * 3 2 1 5 5 H 1.09001 * 109.47244 * 304.99509 * 4 3 2 6 6 C 1.52996 * 109.47288 * 65.00294 * 4 3 2 7 7 C 1.53003 * 109.47279 * 185.45996 * 6 4 3 8 8 C 1.50702 * 109.46678 * 185.00078 * 4 3 2 9 9 O 1.21285 * 120.00311 * 274.88360 * 8 4 3 10 10 N 1.34780 * 119.99852 * 94.61083 * 8 4 3 11 11 C 1.47419 * 125.64821 * 354.99483 * 10 8 4 12 12 C 1.55132 * 104.72223 * 155.82176 * 11 10 8 13 13 C 1.55158 * 101.48813 * 37.29042 * 12 11 10 14 14 H 1.08996 * 110.71868 * 205.97215 * 13 12 11 15 15 N 1.46497 * 110.71839 * 82.69943 * 13 12 11 16 16 C 1.36940 * 120.00217 * 91.47484 * 15 13 12 17 17 H 1.08003 * 119.99665 * 0.02562 * 16 15 13 18 18 C 1.38815 * 119.99958 * 179.97438 * 16 15 13 19 19 N 1.31613 * 120.00339 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 119.99759 * 180.02562 * 18 16 15 21 21 H 1.48507 * 109.47002 * 0.02562 * 20 18 16 22 22 H 1.48495 * 109.47192 * 120.00282 * 20 18 16 23 23 H 1.48499 * 109.47075 * 240.00180 * 20 18 16 24 24 C 1.47025 * 125.64708 * 175.30499 * 10 8 4 25 25 H 1.09009 * 109.88264 * 300.59221 * 24 10 8 26 26 C 1.52999 * 109.88336 * 61.60062 * 24 10 8 27 27 H 1.09003 * 109.47259 * 300.00119 * 1 2 3 28 28 H 1.09001 * 109.47037 * 60.00172 * 1 2 3 29 29 H 1.08996 * 109.47386 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.46829 * 239.99973 * 2 1 3 31 31 H 1.09000 * 109.46898 * 120.00360 * 2 1 3 32 32 H 1.08991 * 109.46970 * 60.00123 * 3 2 1 33 33 H 1.09001 * 109.47052 * 299.99819 * 3 2 1 34 34 H 1.09005 * 109.47136 * 305.45593 * 6 4 3 35 35 H 1.09000 * 109.47609 * 65.46099 * 6 4 3 36 36 H 1.09003 * 109.47018 * 54.95316 * 7 6 4 37 37 H 1.09000 * 109.47498 * 174.95262 * 7 6 4 38 38 H 1.09004 * 109.47232 * 294.95557 * 7 6 4 39 39 H 1.09009 * 110.36761 * 274.74699 * 11 10 8 40 40 H 1.08997 * 110.36804 * 37.07027 * 11 10 8 41 41 H 1.09003 * 111.18670 * 279.18735 * 12 11 10 42 42 H 1.09003 * 110.93943 * 155.29131 * 12 11 10 43 43 H 0.97003 * 119.99866 * 271.48095 * 15 13 12 44 44 H 0.96993 * 120.00365 * 179.97438 * 19 18 16 45 45 H 1.08996 * 109.46709 * 58.54674 * 26 24 10 46 46 H 1.09006 * 109.46759 * 178.54811 * 26 24 10 47 47 H 1.08998 * 109.47493 * 298.54479 * 26 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 1 3.9330 0.8531 0.8427 6 6 4.0805 0.8326 -1.3064 7 6 5.6044 0.7072 -1.2497 8 6 4.0723 2.8578 0.1245 9 8 4.1906 3.5482 -0.8656 10 7 4.3849 3.3583 1.3363 11 6 4.1864 2.6729 2.6262 12 6 5.2180 3.3265 3.5828 13 6 5.1790 4.8055 3.1154 14 1 6.1215 5.3054 3.3385 15 7 4.0557 5.5147 3.7329 16 6 4.2327 6.1779 4.9178 17 1 5.2007 6.1785 5.3969 18 6 3.1684 6.8504 5.5026 19 7 1.9889 6.8501 4.9185 20 14 3.4101 7.7556 7.1186 21 1 4.8185 7.6046 7.5647 22 1 3.1029 9.1962 6.9298 23 1 2.5013 7.1862 8.1457 24 6 4.9744 4.6809 1.5909 25 1 5.9325 4.7648 1.0779 26 6 4.0250 5.7766 1.1020 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 1.6767 1.9563 0.8899 33 1 1.6767 1.9563 -0.8900 34 1 3.6396 -0.1548 -1.4433 35 1 3.7997 1.4748 -2.1411 36 1 5.8895 0.1394 -0.3639 37 1 5.9600 0.1915 -2.1417 38 1 6.0493 1.7012 -1.2029 39 1 3.1719 2.8356 2.9902 40 1 4.3871 1.6064 2.5239 41 1 6.2108 2.8987 3.4433 42 1 4.8983 3.2362 4.6210 43 1 3.1864 5.5145 3.3024 44 1 1.2452 7.3197 5.3273 45 1 3.0670 5.6819 1.6132 46 1 4.4568 6.7541 1.3174 47 1 3.8750 5.6745 0.0273 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001179798907.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:30 Heat of formation + Delta-G solvation = -61.826266 kcal Electronic energy + Delta-G solvation = -23738.234729 eV Core-core repulsion = 20533.719626 eV Total energy + Delta-G solvation = -3204.515103 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.48176 -39.23575 -37.08853 -35.73263 -33.91887 -33.31010 -32.20349 -30.83226 -29.74091 -26.75854 -25.81678 -25.33821 -24.11308 -22.96549 -21.83196 -20.76472 -19.53033 -19.41575 -18.19330 -17.39333 -16.46336 -16.19127 -16.06152 -15.79360 -15.58935 -14.92949 -14.80537 -14.59383 -14.28922 -14.12702 -14.03305 -13.78284 -13.60981 -13.22179 -12.97151 -12.91811 -12.88719 -12.59848 -12.52967 -12.45486 -12.26282 -12.20086 -12.00031 -11.94190 -11.71110 -11.68539 -11.59288 -11.42595 -11.28223 -10.92863 -10.53143 -9.60560 -8.99410 -7.92026 -5.20159 1.49371 1.50517 1.59733 1.67062 2.05669 2.57924 3.37918 3.48986 3.71778 3.78503 3.87540 3.92287 4.01052 4.19200 4.23871 4.26991 4.31432 4.34644 4.42940 4.49574 4.55963 4.61475 4.72371 4.74948 4.80525 4.83597 4.89790 4.94191 4.97472 5.06790 5.07585 5.14832 5.21782 5.26968 5.30925 5.33663 5.35479 5.38636 5.43051 5.49322 5.50607 5.57623 6.29508 6.64996 7.23313 7.36786 8.10523 8.34310 9.31677 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.020476 B = 0.004373 C = 0.003987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1367.155515 B = 6400.709516 C = 7020.684379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.115 4.115 3 C -0.106 4.106 4 C -0.096 4.096 5 H 0.109 0.891 6 C -0.106 4.106 7 C -0.151 4.151 8 C 0.527 3.473 9 O -0.583 6.583 10 N -0.609 5.609 11 C 0.109 3.891 12 C -0.146 4.146 13 C 0.163 3.837 14 H 0.073 0.927 15 N -0.724 5.724 16 C -0.234 4.234 17 H 0.081 0.919 18 C -0.073 4.073 19 N -0.971 5.971 20 Si 0.969 3.031 21 H -0.264 1.264 22 H -0.300 1.300 23 H -0.296 1.296 24 C 0.130 3.870 25 H 0.078 0.922 26 C -0.135 4.135 27 H 0.045 0.955 28 H 0.049 0.951 29 H 0.068 0.932 30 H 0.079 0.921 31 H 0.075 0.925 32 H 0.051 0.949 33 H 0.054 0.946 34 H 0.099 0.901 35 H 0.053 0.947 36 H 0.067 0.933 37 H 0.068 0.932 38 H 0.028 0.972 39 H 0.051 0.949 40 H 0.104 0.896 41 H 0.093 0.907 42 H 0.075 0.925 43 H 0.376 0.624 44 H 0.249 0.751 45 H 0.038 0.962 46 H 0.055 0.945 47 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.285 -17.504 -8.899 20.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.152 4.152 3 C -0.144 4.144 4 C -0.117 4.117 5 H 0.127 0.873 6 C -0.143 4.143 7 C -0.208 4.208 8 C 0.317 3.683 9 O -0.464 6.464 10 N -0.342 5.342 11 C -0.013 4.013 12 C -0.187 4.187 13 C 0.053 3.947 14 H 0.091 0.909 15 N -0.365 5.365 16 C -0.365 4.365 17 H 0.099 0.901 18 C -0.265 4.265 19 N -0.622 5.622 20 Si 0.799 3.201 21 H -0.188 1.188 22 H -0.228 1.228 23 H -0.223 1.223 24 C 0.025 3.975 25 H 0.096 0.904 26 C -0.193 4.193 27 H 0.065 0.935 28 H 0.069 0.931 29 H 0.087 0.913 30 H 0.098 0.902 31 H 0.094 0.906 32 H 0.070 0.930 33 H 0.072 0.928 34 H 0.117 0.883 35 H 0.071 0.929 36 H 0.086 0.914 37 H 0.087 0.913 38 H 0.047 0.953 39 H 0.069 0.931 40 H 0.122 0.878 41 H 0.111 0.889 42 H 0.093 0.907 43 H 0.210 0.790 44 H 0.057 0.943 45 H 0.057 0.943 46 H 0.074 0.926 47 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 4.428 -17.089 -9.328 19.966 hybrid contribution -0.656 1.320 0.795 1.675 sum 3.772 -15.769 -8.534 18.322 Atomic orbital electron populations 1.21793 0.95777 1.02257 1.01458 1.21542 0.95893 0.94391 1.03400 1.21498 0.92076 0.99201 1.01636 1.21470 0.97262 0.91041 1.01939 0.87257 1.21487 0.96368 1.01507 0.94964 1.21780 0.95466 1.00752 1.02834 1.21003 0.76199 0.90145 0.80915 1.90624 1.55673 1.62319 1.37755 1.48773 1.61672 1.17160 1.06569 1.22381 0.99198 0.97715 0.82001 1.23404 0.99199 0.96834 0.99269 1.21410 0.91779 0.92678 0.88879 0.90946 1.42683 1.09025 1.60505 1.24316 1.19684 0.95771 1.23056 0.98030 0.90103 1.25472 0.95672 1.02938 1.02404 1.69825 1.01513 1.49210 1.41607 0.85136 0.77701 0.77466 0.79821 1.18776 1.22774 1.22349 1.21835 0.96072 0.82852 0.96720 0.90434 1.21753 0.99437 0.98424 0.99724 0.93539 0.93143 0.91269 0.90202 0.90631 0.93014 0.92757 0.88254 0.92862 0.91377 0.91283 0.95302 0.93073 0.87776 0.88886 0.90662 0.78984 0.94254 0.94260 0.92607 0.93230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.48 9.91 71.98 0.71 -1.77 16 2 C -0.11 -1.79 5.70 30.60 0.17 -1.61 16 3 C -0.11 -2.33 4.67 30.59 0.14 -2.18 16 4 C -0.10 -2.14 1.82 -11.54 -0.02 -2.16 16 5 H 0.11 1.96 6.40 -2.39 -0.02 1.94 16 6 C -0.11 -2.08 5.04 30.59 0.15 -1.92 16 7 C -0.15 -2.87 9.65 71.98 0.69 -2.18 16 8 C 0.53 16.60 5.81 87.66 0.51 17.10 16 9 O -0.58 -22.66 14.85 -3.05 -0.05 -22.71 16 10 N -0.61 -19.24 3.06 -787.59 -2.41 -21.66 16 11 C 0.11 3.03 6.71 86.93 0.58 3.61 16 12 C -0.15 -4.34 6.78 32.06 0.22 -4.12 16 13 C 0.16 6.02 3.48 46.18 0.16 6.18 16 14 H 0.07 2.63 8.09 -2.39 -0.02 2.61 16 15 N -0.72 -34.48 4.54 -317.33 -1.44 -35.92 16 16 C -0.23 -12.29 9.96 84.03 0.84 -11.45 16 17 H 0.08 4.03 7.83 -2.91 -0.02 4.01 16 18 C -0.07 -4.05 5.50 84.86 0.47 -3.58 16 19 N -0.97 -58.51 13.06 21.65 0.28 -58.23 16 20 Si 0.97 45.11 29.55 68.60 2.03 47.14 16 21 H -0.26 -11.39 7.11 99.48 0.71 -10.69 16 22 H -0.30 -14.25 7.11 99.48 0.71 -13.55 16 23 H -0.30 -13.86 7.11 99.48 0.71 -13.16 16 24 C 0.13 4.60 3.46 45.34 0.16 4.75 16 25 H 0.08 2.62 8.14 -2.38 -0.02 2.60 16 26 C -0.13 -5.47 8.51 71.98 0.61 -4.86 16 27 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 28 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 29 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.08 1.02 6.45 -2.39 -0.02 1.01 16 31 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.05 1.30 8.14 -2.39 -0.02 1.29 16 33 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 34 H 0.10 1.38 6.33 -2.38 -0.02 1.37 16 35 H 0.05 1.29 7.66 -2.39 -0.02 1.27 16 36 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 37 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 38 H 0.03 0.70 7.41 -2.38 -0.02 0.69 16 39 H 0.05 1.65 8.14 -2.38 -0.02 1.63 16 40 H 0.10 2.09 6.62 -2.39 -0.02 2.07 16 41 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 42 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 43 H 0.38 19.78 5.67 -92.71 -0.53 19.25 16 44 H 0.25 14.65 8.31 -92.71 -0.77 13.88 16 45 H 0.04 1.78 6.20 -2.39 -0.01 1.76 16 46 H 0.05 2.29 8.14 -2.38 -0.02 2.27 16 47 H 0.05 2.03 6.73 -2.39 -0.02 2.01 16 Total: -1.00 -65.92 362.92 4.21 -61.71 By element: Atomic # 1 Polarization: 33.45 SS G_CDS: 0.40 Total: 33.85 kcal Atomic # 6 Polarization: -9.59 SS G_CDS: 5.40 Total: -4.19 kcal Atomic # 7 Polarization: -112.24 SS G_CDS: -3.57 Total: -115.81 kcal Atomic # 8 Polarization: -22.66 SS G_CDS: -0.05 Total: -22.71 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 2.03 Total: 47.14 kcal Total: -65.92 4.21 -61.71 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001179798907.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.118 kcal (2) G-P(sol) polarization free energy of solvation -65.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.709 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds