Wall clock time and date at job start Tue Mar 31 2020 05:54:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47185 * 2 1 4 4 C 1.53007 * 109.47094 * 179.97438 * 3 2 1 5 5 C 1.50694 * 109.46873 * 179.97438 * 4 3 2 6 6 O 1.21286 * 120.00407 * 359.97438 * 5 4 3 7 7 N 1.34777 * 119.99925 * 179.97438 * 5 4 3 8 8 C 1.48149 * 127.83485 * 359.97123 * 7 5 4 9 9 C 1.54391 * 104.61531 * 219.60601 * 8 7 5 10 10 H 1.09009 * 110.34197 * 95.00947 * 9 8 7 11 11 C 1.53000 * 110.34063 * 217.26097 * 9 8 7 12 12 C 1.54277 * 104.96216 * 336.13401 * 9 8 7 13 13 C 1.53002 * 110.43347 * 241.08360 * 12 9 8 14 14 C 1.53001 * 110.34352 * 118.87206 * 12 9 8 15 15 N 1.46497 * 109.47393 * 183.01010 * 14 12 9 16 16 C 1.36935 * 120.00298 * 179.97438 * 15 14 12 17 17 H 1.08003 * 119.99995 * 359.97438 * 16 15 14 18 18 C 1.38809 * 120.00267 * 179.97438 * 16 15 14 19 19 N 1.31617 * 120.00268 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00127 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.46845 * 60.00531 * 20 18 16 22 22 H 1.48503 * 109.47399 * 180.02562 * 20 18 16 23 23 H 1.48498 * 109.47295 * 300.00628 * 20 18 16 24 24 C 1.48141 * 127.84083 * 179.97438 * 7 5 4 25 25 H 1.09003 * 109.47573 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47346 * 300.00506 * 1 2 3 27 27 H 1.09004 * 109.46679 * 60.00104 * 1 2 3 28 28 H 1.09000 * 109.47346 * 239.99494 * 2 1 3 29 29 H 1.09004 * 109.46679 * 119.99896 * 2 1 3 30 30 H 1.09000 * 109.47392 * 59.99522 * 3 2 1 31 31 H 1.08998 * 109.46814 * 299.99703 * 3 2 1 32 32 H 1.08999 * 109.46785 * 59.99827 * 4 3 2 33 33 H 1.08997 * 109.46494 * 299.99940 * 4 3 2 34 34 H 1.09004 * 110.40758 * 338.39205 * 8 7 5 35 35 H 1.08999 * 110.40575 * 100.70561 * 8 7 5 36 36 H 1.09001 * 109.47146 * 175.54263 * 11 9 8 37 37 H 1.09003 * 109.47417 * 295.53510 * 11 9 8 38 38 H 1.08995 * 109.47171 * 55.54143 * 11 9 8 39 39 H 1.08999 * 109.46530 * 298.46480 * 13 12 9 40 40 H 1.08992 * 109.47170 * 58.46820 * 13 12 9 41 41 H 1.08998 * 109.46954 * 178.46956 * 13 12 9 42 42 H 1.09001 * 109.47183 * 63.00447 * 14 12 9 43 43 H 1.09004 * 109.47147 * 303.00857 * 14 12 9 44 44 H 0.96992 * 120.00013 * 359.97438 * 15 14 12 45 45 H 0.97000 * 119.99327 * 359.97438 * 19 18 16 46 46 H 1.09000 * 110.40785 * 21.61452 * 24 7 5 47 47 H 1.09001 * 110.50990 * 259.22383 * 24 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4425 0.0006 5 6 4.0723 2.8632 0.0000 6 8 3.2842 3.7851 -0.0013 7 7 5.3974 3.1095 0.0009 8 6 6.5047 2.1252 0.0032 9 6 7.5596 2.7278 0.9558 10 1 7.4396 2.3212 1.9601 11 6 8.9700 2.4483 0.4327 12 6 7.2778 4.2446 0.9541 13 6 8.4930 5.0132 0.4311 14 6 6.9149 4.7199 2.3624 15 7 6.5816 6.1460 2.3259 16 6 6.2224 6.7949 3.4769 17 1 6.1844 6.2553 4.4117 18 6 5.9071 8.1463 3.4424 19 7 5.9528 8.8039 2.3032 20 14 5.4164 9.0313 5.0126 21 1 6.5261 8.9469 5.9958 22 1 5.1308 10.4566 4.7089 23 1 4.2017 8.3938 5.5812 24 6 6.0771 4.4258 0.0000 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.6766 1.9564 0.8899 31 1 1.6767 1.9562 -0.8900 32 1 3.9337 0.9285 -0.8891 33 1 3.9329 0.9288 0.8909 34 1 6.1573 1.1633 0.3803 35 1 6.9157 2.0133 -1.0001 36 1 9.6997 2.9461 1.0713 37 1 9.1540 1.3739 0.4401 38 1 9.0612 2.8256 -0.5858 39 1 9.3454 4.8345 1.0865 40 1 8.7318 4.6732 -0.5766 41 1 8.2675 6.0794 0.4109 42 1 7.7628 4.5618 3.0289 43 1 6.0565 4.1554 2.7265 44 1 6.6153 6.6305 1.4863 45 1 6.2073 8.3442 1.4878 46 1 5.4073 5.1997 0.3748 47 1 6.4229 4.6764 -1.0029 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001180625736.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:38 Heat of formation + Delta-G solvation = -43.711876 kcal Electronic energy + Delta-G solvation = -23316.692759 eV Core-core repulsion = 20112.963155 eV Total energy + Delta-G solvation = -3203.729604 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.29066 -38.40359 -35.41434 -34.92339 -33.35737 -31.58591 -30.70063 -29.41527 -27.11916 -25.95853 -25.49074 -24.02085 -23.19190 -21.34216 -21.12435 -19.11058 -18.34067 -17.37443 -16.67950 -16.21259 -15.63777 -15.30199 -15.05903 -14.18867 -14.05623 -14.00864 -13.79554 -13.58531 -13.36502 -13.00537 -12.90884 -12.62682 -12.46747 -12.05522 -11.83031 -11.64138 -11.55908 -11.44982 -11.35737 -11.25618 -11.12079 -10.71562 -10.69732 -10.68614 -10.47997 -10.21641 -10.11219 -9.89399 -9.60409 -9.09228 -8.81651 -8.53641 -6.92644 -6.03474 -3.02264 2.82134 3.08430 3.55958 3.60734 3.77618 4.42327 4.55830 4.68238 4.73472 4.78908 4.82434 4.86579 5.08962 5.15785 5.25272 5.32670 5.35113 5.36769 5.44508 5.50630 5.56264 5.65681 5.68120 5.69611 5.72483 5.76264 5.80473 5.90403 5.94992 5.98260 6.01483 6.11719 6.13432 6.17804 6.25675 6.33833 6.37010 6.50857 6.62364 6.72731 6.83129 7.74569 7.86896 8.36440 8.82720 9.30122 10.16278 10.31201 11.45160 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.012951 B = 0.004760 C = 0.003733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2161.476453 B = 5881.406535 C = 7498.410369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.123 4.123 3 C -0.107 4.107 4 C -0.133 4.133 5 C 0.528 3.472 6 O -0.534 6.534 7 N -0.622 5.622 8 C 0.106 3.894 9 C -0.098 4.098 10 H 0.082 0.918 11 C -0.141 4.141 12 C -0.078 4.078 13 C -0.132 4.132 14 C 0.176 3.824 15 N -0.740 5.740 16 C -0.330 4.330 17 H 0.062 0.938 18 C -0.045 4.045 19 N -0.943 5.943 20 Si 1.080 2.920 21 H -0.296 1.296 22 H -0.285 1.285 23 H -0.296 1.296 24 C 0.112 3.888 25 H 0.052 0.948 26 H 0.055 0.945 27 H 0.054 0.946 28 H 0.060 0.940 29 H 0.061 0.939 30 H 0.071 0.929 31 H 0.069 0.931 32 H 0.088 0.912 33 H 0.090 0.910 34 H 0.075 0.925 35 H 0.070 0.930 36 H 0.064 0.936 37 H 0.051 0.949 38 H 0.059 0.941 39 H 0.060 0.940 40 H 0.052 0.948 41 H 0.062 0.938 42 H 0.020 0.980 43 H 0.017 0.983 44 H 0.367 0.633 45 H 0.254 0.746 46 H 0.095 0.905 47 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.852 -20.621 -7.436 21.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.161 4.161 3 C -0.145 4.145 4 C -0.173 4.173 5 C 0.317 3.683 6 O -0.410 6.410 7 N -0.356 5.356 8 C -0.017 4.017 9 C -0.118 4.118 10 H 0.100 0.900 11 C -0.199 4.199 12 C -0.079 4.079 13 C -0.190 4.190 14 C 0.048 3.952 15 N -0.386 5.386 16 C -0.461 4.461 17 H 0.080 0.920 18 C -0.242 4.242 19 N -0.589 5.589 20 Si 0.911 3.089 21 H -0.223 1.223 22 H -0.210 1.210 23 H -0.223 1.223 24 C -0.011 4.011 25 H 0.071 0.929 26 H 0.074 0.926 27 H 0.073 0.927 28 H 0.079 0.921 29 H 0.080 0.920 30 H 0.090 0.910 31 H 0.088 0.912 32 H 0.107 0.893 33 H 0.108 0.892 34 H 0.093 0.907 35 H 0.088 0.912 36 H 0.083 0.917 37 H 0.070 0.930 38 H 0.078 0.922 39 H 0.079 0.921 40 H 0.071 0.929 41 H 0.081 0.919 42 H 0.038 0.962 43 H 0.035 0.965 44 H 0.201 0.799 45 H 0.065 0.935 46 H 0.114 0.886 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -0.196 -18.787 -6.584 19.908 hybrid contribution 0.604 -1.459 -0.779 1.760 sum 0.408 -20.245 -7.362 21.546 Atomic orbital electron populations 1.21763 0.95734 1.01374 1.02153 1.21537 0.96127 0.96645 1.01796 1.21397 0.92751 0.96477 1.03839 1.21651 0.97950 0.93836 1.03892 1.20350 0.80241 0.91669 0.76045 1.90754 1.54045 1.46676 1.49507 1.48969 1.04515 1.08849 1.73299 1.22478 0.87160 0.92530 0.99558 1.22137 0.94722 0.95376 0.99554 0.90003 1.21887 0.95661 1.00815 1.01493 1.21739 0.95022 0.93926 0.97234 1.21855 0.96651 1.00732 0.99757 1.20567 0.96608 0.86519 0.91485 1.42378 1.83346 1.04649 1.08208 1.20000 1.43171 0.94887 0.88012 0.91972 1.25739 1.00639 0.93580 1.04269 1.70883 1.51338 1.38010 0.98690 0.83248 0.75768 0.76249 0.73667 1.22345 1.21022 1.22337 1.22507 0.93905 0.86257 0.98395 0.92888 0.92552 0.92674 0.92142 0.92035 0.91023 0.91217 0.89335 0.89170 0.90663 0.91152 0.91738 0.92984 0.92169 0.92111 0.92925 0.91875 0.96200 0.96537 0.79888 0.93515 0.88629 0.91791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 9.91 37.16 0.37 -0.90 16 2 C -0.12 -1.06 5.93 -26.73 -0.16 -1.22 16 3 C -0.11 -1.22 4.50 -26.73 -0.12 -1.34 16 4 C -0.13 -1.49 4.68 -27.88 -0.13 -1.62 16 5 C 0.53 8.61 7.91 -10.99 -0.09 8.53 16 6 O -0.53 -11.36 16.25 5.55 0.09 -11.27 16 7 N -0.62 -9.41 3.32 -169.29 -0.56 -9.97 16 8 C 0.11 1.15 6.46 -2.41 -0.02 1.14 16 9 C -0.10 -1.17 3.31 -89.22 -0.30 -1.47 16 10 H 0.08 1.01 7.71 -51.92 -0.40 0.61 16 11 C -0.14 -1.33 7.95 37.16 0.30 -1.04 16 12 C -0.08 -1.24 0.73 -153.09 -0.11 -1.35 16 13 C -0.13 -1.96 7.11 37.16 0.26 -1.70 16 14 C 0.18 3.68 4.96 -4.04 -0.02 3.66 16 15 N -0.74 -19.19 4.76 -59.91 -0.29 -19.47 16 16 C -0.33 -9.70 9.99 -15.06 -0.15 -9.85 16 17 H 0.06 1.81 7.83 -52.48 -0.41 1.40 16 18 C -0.04 -1.35 5.50 -17.43 -0.10 -1.45 16 19 N -0.94 -30.13 13.70 55.49 0.76 -29.37 16 20 Si 1.08 26.98 29.92 -169.99 -5.09 21.89 16 21 H -0.30 -7.01 7.11 56.52 0.40 -6.61 16 22 H -0.28 -7.19 7.11 56.52 0.40 -6.78 16 23 H -0.30 -7.14 7.11 56.52 0.40 -6.74 16 24 C 0.11 1.93 5.88 -2.39 -0.01 1.91 16 25 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.07 0.95 8.10 -51.93 -0.42 0.53 16 31 H 0.07 0.86 8.10 -51.93 -0.42 0.44 16 32 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 33 H 0.09 0.87 7.95 -51.93 -0.41 0.46 16 34 H 0.07 0.65 7.30 -51.93 -0.38 0.27 16 35 H 0.07 0.65 7.83 -51.93 -0.41 0.25 16 36 H 0.06 0.64 6.85 -51.93 -0.36 0.29 16 37 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.06 0.54 6.72 -51.93 -0.35 0.19 16 39 H 0.06 0.86 6.90 -51.93 -0.36 0.50 16 40 H 0.05 0.64 6.70 -51.93 -0.35 0.29 16 41 H 0.06 1.10 6.96 -51.93 -0.36 0.74 16 42 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 44 H 0.37 9.67 4.81 -40.82 -0.20 9.48 16 45 H 0.25 7.98 6.77 -40.82 -0.28 7.70 16 46 H 0.10 2.11 6.72 -51.93 -0.35 1.76 16 47 H 0.06 1.00 7.85 -51.93 -0.41 0.59 16 LS Contribution 362.47 15.07 5.46 5.46 Total: -1.00 -35.26 362.47 -8.35 -43.60 By element: Atomic # 1 Polarization: 14.27 SS G_CDS: -8.45 Total: 5.82 kcal Atomic # 6 Polarization: -6.42 SS G_CDS: -0.27 Total: -6.69 kcal Atomic # 7 Polarization: -58.73 SS G_CDS: -0.09 Total: -58.81 kcal Atomic # 8 Polarization: -11.36 SS G_CDS: 0.09 Total: -11.27 kcal Atomic # 14 Polarization: 26.98 SS G_CDS: -5.09 Total: 21.89 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -35.26 -8.35 -43.60 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001180625736.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.109 kcal (2) G-P(sol) polarization free energy of solvation -35.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds