Wall clock time and date at job start Tue Mar 31 2020 05:54:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47185 * 2 1 4 4 C 1.53007 * 109.47094 * 179.97438 * 3 2 1 5 5 C 1.50694 * 109.46873 * 179.97438 * 4 3 2 6 6 O 1.21286 * 120.00407 * 359.97438 * 5 4 3 7 7 N 1.34777 * 119.99925 * 179.97438 * 5 4 3 8 8 C 1.48149 * 127.83485 * 359.97123 * 7 5 4 9 9 C 1.54391 * 104.61531 * 219.60601 * 8 7 5 10 10 H 1.09009 * 110.34197 * 95.00947 * 9 8 7 11 11 C 1.53000 * 110.34063 * 217.26097 * 9 8 7 12 12 C 1.54277 * 104.96216 * 336.13401 * 9 8 7 13 13 C 1.53002 * 110.43347 * 241.08360 * 12 9 8 14 14 C 1.53001 * 110.34352 * 118.87206 * 12 9 8 15 15 N 1.46497 * 109.47393 * 183.01010 * 14 12 9 16 16 C 1.36935 * 120.00298 * 179.97438 * 15 14 12 17 17 H 1.08003 * 119.99995 * 359.97438 * 16 15 14 18 18 C 1.38809 * 120.00267 * 179.97438 * 16 15 14 19 19 N 1.31617 * 120.00268 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00127 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.46845 * 60.00531 * 20 18 16 22 22 H 1.48503 * 109.47399 * 180.02562 * 20 18 16 23 23 H 1.48498 * 109.47295 * 300.00628 * 20 18 16 24 24 C 1.48141 * 127.84083 * 179.97438 * 7 5 4 25 25 H 1.09003 * 109.47573 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47346 * 300.00506 * 1 2 3 27 27 H 1.09004 * 109.46679 * 60.00104 * 1 2 3 28 28 H 1.09000 * 109.47346 * 239.99494 * 2 1 3 29 29 H 1.09004 * 109.46679 * 119.99896 * 2 1 3 30 30 H 1.09000 * 109.47392 * 59.99522 * 3 2 1 31 31 H 1.08998 * 109.46814 * 299.99703 * 3 2 1 32 32 H 1.08999 * 109.46785 * 59.99827 * 4 3 2 33 33 H 1.08997 * 109.46494 * 299.99940 * 4 3 2 34 34 H 1.09004 * 110.40758 * 338.39205 * 8 7 5 35 35 H 1.08999 * 110.40575 * 100.70561 * 8 7 5 36 36 H 1.09001 * 109.47146 * 175.54263 * 11 9 8 37 37 H 1.09003 * 109.47417 * 295.53510 * 11 9 8 38 38 H 1.08995 * 109.47171 * 55.54143 * 11 9 8 39 39 H 1.08999 * 109.46530 * 298.46480 * 13 12 9 40 40 H 1.08992 * 109.47170 * 58.46820 * 13 12 9 41 41 H 1.08998 * 109.46954 * 178.46956 * 13 12 9 42 42 H 1.09001 * 109.47183 * 63.00447 * 14 12 9 43 43 H 1.09004 * 109.47147 * 303.00857 * 14 12 9 44 44 H 0.96992 * 120.00013 * 359.97438 * 15 14 12 45 45 H 0.97000 * 119.99327 * 359.97438 * 19 18 16 46 46 H 1.09000 * 110.40785 * 21.61452 * 24 7 5 47 47 H 1.09001 * 110.50990 * 259.22383 * 24 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4425 0.0006 5 6 4.0723 2.8632 0.0000 6 8 3.2842 3.7851 -0.0013 7 7 5.3974 3.1095 0.0009 8 6 6.5047 2.1252 0.0032 9 6 7.5596 2.7278 0.9558 10 1 7.4396 2.3212 1.9601 11 6 8.9700 2.4483 0.4327 12 6 7.2778 4.2446 0.9541 13 6 8.4930 5.0132 0.4311 14 6 6.9149 4.7199 2.3624 15 7 6.5816 6.1460 2.3259 16 6 6.2224 6.7949 3.4769 17 1 6.1844 6.2553 4.4117 18 6 5.9071 8.1463 3.4424 19 7 5.9528 8.8039 2.3032 20 14 5.4164 9.0313 5.0126 21 1 6.5261 8.9469 5.9958 22 1 5.1308 10.4566 4.7089 23 1 4.2017 8.3938 5.5812 24 6 6.0771 4.4258 0.0000 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.6766 1.9564 0.8899 31 1 1.6767 1.9562 -0.8900 32 1 3.9337 0.9285 -0.8891 33 1 3.9329 0.9288 0.8909 34 1 6.1573 1.1633 0.3803 35 1 6.9157 2.0133 -1.0001 36 1 9.6997 2.9461 1.0713 37 1 9.1540 1.3739 0.4401 38 1 9.0612 2.8256 -0.5858 39 1 9.3454 4.8345 1.0865 40 1 8.7318 4.6732 -0.5766 41 1 8.2675 6.0794 0.4109 42 1 7.7628 4.5618 3.0289 43 1 6.0565 4.1554 2.7265 44 1 6.6153 6.6305 1.4863 45 1 6.2073 8.3442 1.4878 46 1 5.4073 5.1997 0.3748 47 1 6.4229 4.6764 -1.0029 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001180625736.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:37 Heat of formation + Delta-G solvation = -66.833672 kcal Electronic energy + Delta-G solvation = -23317.695396 eV Core-core repulsion = 20112.963155 eV Total energy + Delta-G solvation = -3204.732241 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.51734 -39.69669 -36.81112 -36.26716 -34.80327 -33.16146 -31.68577 -30.96768 -28.25656 -27.39055 -26.70595 -25.42585 -24.82926 -22.59456 -21.96841 -20.31557 -19.75630 -19.24633 -18.06777 -17.28458 -16.97700 -16.63157 -16.23653 -15.85583 -15.43966 -15.32725 -15.20687 -14.67183 -14.61039 -14.50998 -14.08757 -13.67058 -13.45824 -13.17407 -13.02409 -12.94351 -12.84654 -12.59046 -12.50699 -12.35226 -12.24055 -12.13809 -11.95305 -11.90440 -11.67006 -11.62211 -11.48393 -11.32864 -11.12960 -10.98985 -10.89756 -9.77935 -9.14935 -8.45943 -5.38091 1.52059 1.58834 1.63469 1.79819 1.94247 2.66770 3.31633 3.35911 3.52046 3.64482 3.73695 3.88067 3.98283 4.01262 4.15800 4.25562 4.29527 4.33490 4.42331 4.50709 4.56719 4.59031 4.65129 4.70963 4.72260 4.76952 4.87142 4.89282 4.91009 4.97546 4.99946 5.07206 5.08049 5.14665 5.23633 5.28147 5.34273 5.35761 5.38437 5.47449 5.50883 5.60784 6.43451 6.57870 7.04858 7.13361 7.95614 8.06320 9.06031 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.012951 B = 0.004760 C = 0.003733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2161.476453 B = 5881.406535 C = 7498.410369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.115 4.115 3 C -0.106 4.106 4 C -0.120 4.120 5 C 0.513 3.487 6 O -0.602 6.602 7 N -0.624 5.624 8 C 0.105 3.895 9 C -0.091 4.091 10 H 0.079 0.921 11 C -0.136 4.136 12 C -0.070 4.070 13 C -0.126 4.126 14 C 0.176 3.824 15 N -0.751 5.751 16 C -0.338 4.338 17 H 0.062 0.938 18 C -0.104 4.104 19 N -0.972 5.972 20 Si 1.129 2.871 21 H -0.271 1.271 22 H -0.289 1.289 23 H -0.283 1.283 24 C 0.112 3.888 25 H 0.070 0.930 26 H 0.044 0.956 27 H 0.049 0.951 28 H 0.081 0.919 29 H 0.074 0.926 30 H 0.040 0.960 31 H 0.050 0.950 32 H 0.126 0.874 33 H 0.115 0.885 34 H 0.110 0.890 35 H 0.100 0.900 36 H 0.057 0.943 37 H 0.080 0.920 38 H 0.069 0.931 39 H 0.069 0.931 40 H 0.087 0.913 41 H 0.025 0.975 42 H 0.023 0.977 43 H -0.005 1.005 44 H 0.361 0.639 45 H 0.241 0.759 46 H 0.034 0.966 47 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.443 -24.252 -7.768 25.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.152 4.152 3 C -0.145 4.145 4 C -0.159 4.159 5 C 0.305 3.695 6 O -0.483 6.483 7 N -0.356 5.356 8 C -0.016 4.016 9 C -0.111 4.111 10 H 0.097 0.903 11 C -0.193 4.193 12 C -0.072 4.072 13 C -0.183 4.183 14 C 0.050 3.950 15 N -0.396 5.396 16 C -0.469 4.469 17 H 0.080 0.920 18 C -0.295 4.295 19 N -0.620 5.620 20 Si 0.953 3.047 21 H -0.197 1.197 22 H -0.215 1.215 23 H -0.210 1.210 24 C -0.012 4.012 25 H 0.089 0.911 26 H 0.063 0.937 27 H 0.068 0.932 28 H 0.099 0.901 29 H 0.092 0.908 30 H 0.059 0.941 31 H 0.069 0.931 32 H 0.144 0.856 33 H 0.133 0.867 34 H 0.128 0.872 35 H 0.118 0.882 36 H 0.076 0.924 37 H 0.099 0.901 38 H 0.088 0.912 39 H 0.088 0.912 40 H 0.106 0.894 41 H 0.044 0.956 42 H 0.041 0.959 43 H 0.013 0.987 44 H 0.194 0.806 45 H 0.052 0.948 46 H 0.052 0.948 47 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 1.452 -22.503 -6.916 23.587 hybrid contribution 0.108 -0.359 -0.677 0.774 sum 1.560 -22.862 -7.592 24.140 Atomic orbital electron populations 1.21799 0.95932 1.02239 1.01413 1.21497 0.95963 0.94418 1.03358 1.21377 0.93392 0.98177 1.01524 1.21704 0.97267 0.90271 1.06667 1.21468 0.80090 0.93287 0.74659 1.90721 1.55852 1.49096 1.52636 1.49151 1.05277 1.08984 1.72226 1.22834 0.85131 0.92514 1.01096 1.22147 0.97177 0.91457 1.00291 0.90257 1.21863 0.93061 1.02774 1.01608 1.21649 0.94768 0.97360 0.93386 1.21823 0.96209 0.98278 1.01997 1.20699 0.95440 0.83645 0.95235 1.42577 1.83260 1.06675 1.07082 1.20385 1.42112 0.95375 0.89074 0.92030 1.27274 1.00825 0.94980 1.06455 1.70993 1.53568 1.38354 0.99088 0.82636 0.76593 0.74770 0.70733 1.19715 1.21522 1.20976 1.22335 0.93384 0.86306 0.99174 0.91142 0.93686 0.93175 0.90083 0.90769 0.94093 0.93070 0.85589 0.86730 0.87223 0.88174 0.92378 0.90109 0.91174 0.91247 0.89414 0.95570 0.95936 0.98705 0.80573 0.94833 0.94754 0.90173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.42 9.91 71.98 0.71 -1.70 16 2 C -0.11 -1.70 5.93 30.59 0.18 -1.51 16 3 C -0.11 -2.39 4.50 30.60 0.14 -2.25 16 4 C -0.12 -2.39 4.68 29.85 0.14 -2.25 16 5 C 0.51 16.84 7.91 87.66 0.69 17.53 16 6 O -0.60 -27.41 16.25 -3.05 -0.05 -27.46 16 7 N -0.62 -18.29 3.32 -807.89 -2.68 -20.97 16 8 C 0.11 1.84 6.46 86.53 0.56 2.40 16 9 C -0.09 -1.89 3.31 -9.89 -0.03 -1.92 16 10 H 0.08 1.72 7.71 -2.38 -0.02 1.70 16 11 C -0.14 -1.93 7.95 71.98 0.57 -1.35 16 12 C -0.07 -2.21 0.73 -51.26 -0.04 -2.24 16 13 C -0.13 -3.62 7.11 71.98 0.51 -3.11 16 14 C 0.18 7.60 4.96 86.38 0.43 8.03 16 15 N -0.75 -40.96 4.76 -343.45 -1.63 -42.59 16 16 C -0.34 -20.57 9.99 84.03 0.84 -19.73 16 17 H 0.06 3.67 7.83 -2.91 -0.02 3.65 16 18 C -0.10 -6.46 5.50 84.86 0.47 -6.00 16 19 N -0.97 -64.55 13.70 21.65 0.30 -64.25 16 20 Si 1.13 55.24 29.92 68.60 2.05 57.29 16 21 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 22 H -0.29 -14.30 7.11 99.48 0.71 -13.59 16 23 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 24 C 0.11 3.94 5.88 86.55 0.51 4.45 16 25 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 26 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 27 H 0.05 0.81 8.14 -2.38 -0.02 0.79 16 28 H 0.08 0.90 8.14 -2.39 -0.02 0.89 16 29 H 0.07 0.94 8.14 -2.38 -0.02 0.92 16 30 H 0.04 1.14 8.10 -2.39 -0.02 1.12 16 31 H 0.05 1.31 8.10 -2.39 -0.02 1.29 16 32 H 0.13 1.62 8.14 -2.39 -0.02 1.60 16 33 H 0.11 1.77 7.95 -2.39 -0.02 1.75 16 34 H 0.11 1.25 7.30 -2.39 -0.02 1.23 16 35 H 0.10 1.27 7.83 -2.39 -0.02 1.25 16 36 H 0.06 0.93 6.85 -2.39 -0.02 0.92 16 37 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 38 H 0.07 0.89 6.72 -2.39 -0.02 0.87 16 39 H 0.07 1.87 6.90 -2.39 -0.02 1.85 16 40 H 0.09 1.90 6.70 -2.39 -0.02 1.88 16 41 H 0.03 0.93 6.96 -2.39 -0.02 0.91 16 42 H 0.02 0.97 8.14 -2.39 -0.02 0.95 16 43 H 0.00 -0.23 8.14 -2.38 -0.02 -0.25 16 44 H 0.36 20.38 4.81 -92.71 -0.45 19.94 16 45 H 0.24 16.07 6.77 -92.71 -0.63 15.44 16 46 H 0.03 1.63 6.72 -2.39 -0.02 1.62 16 47 H 0.08 2.52 7.85 -2.39 -0.02 2.50 16 Total: -1.00 -84.24 362.47 4.29 -79.95 By element: Atomic # 1 Polarization: 27.06 SS G_CDS: 0.62 Total: 27.68 kcal Atomic # 6 Polarization: -15.33 SS G_CDS: 5.68 Total: -9.65 kcal Atomic # 7 Polarization: -123.80 SS G_CDS: -4.02 Total: -127.81 kcal Atomic # 8 Polarization: -27.41 SS G_CDS: -0.05 Total: -27.46 kcal Atomic # 14 Polarization: 55.24 SS G_CDS: 2.05 Total: 57.29 kcal Total: -84.24 4.29 -79.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001180625736.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.121 kcal (2) G-P(sol) polarization free energy of solvation -84.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds