Wall clock time and date at job start Tue Mar 31 2020 05:19:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53003 * 109.47427 * 2 1 4 4 C 1.53002 * 109.47077 * 180.02562 * 3 2 1 5 5 C 1.53001 * 109.46690 * 179.97438 * 4 3 2 6 6 H 1.09001 * 109.47511 * 304.99864 * 5 4 3 7 7 C 1.53007 * 109.47068 * 65.00024 * 5 4 3 8 8 C 1.52998 * 109.47032 * 185.49622 * 7 5 4 9 9 C 1.50699 * 109.47002 * 184.99438 * 5 4 3 10 10 O 1.21282 * 120.00423 * 275.66466 * 9 5 4 11 11 N 1.34783 * 119.99566 * 95.66199 * 9 5 4 12 12 C 1.47022 * 125.65132 * 4.73201 * 11 9 5 13 13 C 1.54319 * 107.27051 * 181.01762 * 12 11 9 14 14 C 1.55147 * 102.94368 * 22.19681 * 13 12 11 15 15 H 1.09004 * 111.00830 * 82.60650 * 14 13 12 16 16 N 1.46496 * 111.00696 * 206.41983 * 14 13 12 17 17 C 1.36939 * 120.00130 * 273.54631 * 16 14 13 18 18 H 1.08001 * 120.00001 * 359.97438 * 17 16 14 19 19 C 1.38817 * 120.00012 * 179.97438 * 17 16 14 20 20 N 1.31620 * 119.99961 * 180.02562 * 19 17 16 21 21 Si 1.86795 * 120.00080 * 0.02562 * 19 17 16 22 22 H 1.48497 * 109.47414 * 89.99720 * 21 19 17 23 23 H 1.48504 * 109.47284 * 209.99777 * 21 19 17 24 24 H 1.48501 * 109.47284 * 329.99965 * 21 19 17 25 25 C 1.47425 * 125.64512 * 184.41942 * 11 9 5 26 26 H 1.09004 * 109.47305 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47299 * 300.00264 * 1 2 3 28 28 H 1.08999 * 109.47020 * 60.00264 * 1 2 3 29 29 H 1.09002 * 109.47299 * 239.99736 * 2 1 3 30 30 H 1.08999 * 109.47020 * 119.99736 * 2 1 3 31 31 H 1.08995 * 109.47320 * 59.99287 * 3 2 1 32 32 H 1.09008 * 109.46731 * 299.99647 * 3 2 1 33 33 H 1.08999 * 109.47119 * 299.99582 * 4 3 2 34 34 H 1.08998 * 109.47057 * 59.99764 * 4 3 2 35 35 H 1.09000 * 109.46721 * 305.49244 * 7 5 4 36 36 H 1.08993 * 109.47047 * 65.49502 * 7 5 4 37 37 H 1.09000 * 109.47055 * 54.52219 * 8 7 5 38 38 H 1.08999 * 109.47110 * 174.52608 * 8 7 5 39 39 H 1.09002 * 109.47062 * 294.52243 * 8 7 5 40 40 H 1.08996 * 109.87867 * 300.44248 * 12 11 9 41 41 H 1.09006 * 109.87868 * 61.59947 * 12 11 9 42 42 H 1.09004 * 110.71454 * 140.55483 * 13 12 11 43 43 H 1.08994 * 110.72363 * 263.82435 * 13 12 11 44 44 H 0.97001 * 120.00127 * 93.54163 * 16 14 13 45 45 H 0.96999 * 120.00001 * 180.02562 * 20 19 17 46 46 H 1.08997 * 110.36706 * 274.75028 * 25 11 9 47 47 H 1.09000 * 110.36948 * 37.07548 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 -0.0006 5 6 4.0800 2.8849 -0.0013 6 1 3.6451 3.4238 -0.8431 7 6 3.6758 3.5694 1.3061 8 6 4.0647 5.0480 1.2491 9 6 5.5819 2.8867 -0.1256 10 8 6.2724 2.7537 0.8625 11 7 6.1577 3.0359 -1.3351 12 6 5.4483 3.3031 -2.5948 13 6 6.5096 3.3694 -3.7131 14 6 7.6986 2.5749 -3.1113 15 1 7.5618 1.5023 -3.2495 16 7 8.9710 3.0174 -3.6871 17 6 9.4233 2.4640 -4.8551 18 1 8.8422 1.7010 -5.3517 19 6 10.6287 2.8837 -5.4009 20 7 11.0632 2.3521 -6.5239 21 14 11.6340 4.2029 -4.5417 22 1 12.5742 3.5647 -3.5856 23 1 12.4026 4.9753 -5.5507 24 1 10.7247 5.1175 -3.8056 25 6 7.6038 2.9648 -1.6128 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8932 -0.5138 0.8900 31 1 1.6766 1.9564 0.8899 32 1 1.6767 1.9563 -0.8901 33 1 3.9337 0.9285 0.8891 34 1 3.9329 0.9287 -0.8908 35 1 2.5980 3.4822 1.4436 36 1 4.1884 3.0907 2.1404 37 1 3.6300 5.5040 0.3596 38 1 3.6909 5.5565 2.1378 39 1 5.1504 5.1368 1.2093 40 1 4.7425 2.4984 -2.8006 41 1 4.9200 4.2543 -2.5282 42 1 6.1443 2.8883 -4.6205 43 1 6.7967 4.4019 -3.9117 44 1 9.4930 3.7025 -3.2409 45 1 11.9056 2.6451 -6.9051 46 1 8.0714 3.9341 -1.4403 47 1 8.0722 2.2009 -0.9921 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001181144939.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:45 Heat of formation + Delta-G solvation = -52.543423 kcal Electronic energy + Delta-G solvation = -22840.476445 eV Core-core repulsion = 19636.363876 eV Total energy + Delta-G solvation = -3204.112569 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.21709 -37.80890 -36.49586 -34.28913 -34.14900 -31.66064 -30.78035 -29.83261 -28.42480 -26.78926 -23.90764 -23.10910 -22.75047 -21.86890 -20.92334 -20.21491 -18.66833 -17.75937 -17.24336 -16.10969 -15.79403 -15.38983 -14.84313 -14.33219 -14.24685 -14.01417 -13.82400 -13.67506 -13.35583 -13.20983 -12.85457 -12.62309 -12.57003 -12.33604 -12.07533 -11.87870 -11.79438 -11.51306 -11.43356 -11.37406 -11.21718 -10.95225 -10.86173 -10.82844 -10.72078 -10.57369 -10.47037 -10.10187 -9.67291 -9.54844 -9.00640 -8.47993 -7.37827 -5.84346 -3.21965 2.71837 3.08779 3.34070 3.37500 3.42547 4.37813 4.47782 4.53063 4.60790 4.75335 4.85430 4.90536 4.96860 5.05375 5.13747 5.20655 5.23823 5.30341 5.36576 5.40869 5.47229 5.50848 5.52829 5.55477 5.62245 5.67042 5.72603 5.78169 5.82421 5.85322 5.89685 5.92229 6.03211 6.07571 6.10942 6.13457 6.16892 6.26101 6.46936 6.50981 6.77596 7.67604 7.89601 8.28659 8.34130 9.10806 9.83257 10.01518 11.33401 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.023350 B = 0.003490 C = 0.003194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1198.841484 B = 8021.311977 C = 8765.125225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.126 4.126 3 C -0.118 4.118 4 C -0.108 4.108 5 C -0.103 4.103 6 H 0.088 0.912 7 C -0.110 4.110 8 C -0.155 4.155 9 C 0.533 3.467 10 O -0.546 6.546 11 N -0.614 5.614 12 C 0.101 3.899 13 C -0.154 4.154 14 C 0.177 3.823 15 H 0.072 0.928 16 N -0.739 5.739 17 C -0.249 4.249 18 H 0.092 0.908 19 C 0.008 3.992 20 N -0.930 5.930 21 Si 0.884 3.116 22 H -0.283 1.283 23 H -0.290 1.290 24 H -0.276 1.276 25 C 0.096 3.904 26 H 0.052 0.948 27 H 0.052 0.948 28 H 0.053 0.947 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.066 0.934 32 H 0.063 0.937 33 H 0.070 0.930 34 H 0.067 0.933 35 H 0.071 0.929 36 H 0.075 0.925 37 H 0.052 0.948 38 H 0.055 0.945 39 H 0.056 0.944 40 H 0.065 0.935 41 H 0.061 0.939 42 H 0.079 0.921 43 H 0.075 0.925 44 H 0.363 0.637 45 H 0.261 0.739 46 H 0.064 0.936 47 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.085 0.898 13.310 24.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.164 4.164 3 C -0.156 4.156 4 C -0.146 4.146 5 C -0.124 4.124 6 H 0.106 0.894 7 C -0.148 4.148 8 C -0.212 4.212 9 C 0.321 3.679 10 O -0.423 6.423 11 N -0.348 5.348 12 C -0.022 4.022 13 C -0.195 4.195 14 C 0.066 3.934 15 H 0.090 0.910 16 N -0.381 5.381 17 C -0.378 4.378 18 H 0.110 0.890 19 C -0.188 4.188 20 N -0.577 5.577 21 Si 0.714 3.286 22 H -0.209 1.209 23 H -0.216 1.216 24 H -0.203 1.203 25 C -0.027 4.027 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.073 0.927 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.085 0.915 32 H 0.082 0.918 33 H 0.089 0.911 34 H 0.086 0.914 35 H 0.090 0.910 36 H 0.093 0.907 37 H 0.071 0.929 38 H 0.074 0.926 39 H 0.075 0.925 40 H 0.083 0.917 41 H 0.080 0.920 42 H 0.098 0.902 43 H 0.093 0.907 44 H 0.197 0.803 45 H 0.071 0.929 46 H 0.083 0.917 47 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -20.685 0.671 13.679 24.809 hybrid contribution 0.821 1.058 0.288 1.370 sum -19.864 1.730 13.968 24.345 Atomic orbital electron populations 1.21772 0.95935 1.01544 1.01732 1.21537 0.95758 0.96882 1.02224 1.21669 0.94597 0.96959 1.02336 1.21500 0.95774 0.94188 1.03110 1.21393 0.91902 0.98567 1.00530 0.89394 1.21491 1.01112 0.95676 0.96474 1.21806 1.02039 0.95932 1.01452 1.20280 0.90230 0.75871 0.81488 1.90674 1.65080 1.50333 1.36221 1.48502 1.08455 1.70518 1.07303 1.22113 0.96001 1.00122 0.83976 1.23372 0.96464 1.02765 0.96905 1.21311 0.86233 0.97297 0.88566 0.91027 1.42613 1.20910 1.46984 1.27628 1.19024 1.03482 1.17659 0.97658 0.89012 1.24671 0.97632 0.99437 0.97043 1.69696 1.22411 1.45402 1.20232 0.86570 0.80652 0.82370 0.79042 1.20909 1.21633 1.20265 1.22563 0.80606 1.01620 0.97956 0.92859 0.92846 0.92743 0.91899 0.92003 0.91531 0.91807 0.91092 0.91409 0.91038 0.90662 0.92919 0.92573 0.92509 0.91675 0.92026 0.90240 0.90651 0.80327 0.92909 0.91728 0.90480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 9.91 37.15 0.37 -0.59 16 2 C -0.13 -0.90 5.93 -26.73 -0.16 -1.06 16 3 C -0.12 -0.87 4.98 -26.73 -0.13 -1.00 16 4 C -0.11 -1.02 4.67 -26.73 -0.12 -1.14 16 5 C -0.10 -1.08 1.91 -91.77 -0.17 -1.26 16 6 H 0.09 0.82 6.97 -51.93 -0.36 0.45 16 7 C -0.11 -1.08 5.05 -26.73 -0.13 -1.22 16 8 C -0.15 -1.56 9.64 37.16 0.36 -1.20 16 9 C 0.53 7.82 5.97 -10.98 -0.07 7.75 16 10 O -0.55 -9.95 16.32 5.56 0.09 -9.86 16 11 N -0.61 -9.02 3.33 -170.38 -0.57 -9.59 16 12 C 0.10 1.26 5.94 -3.07 -0.02 1.24 16 13 C -0.15 -2.38 6.64 -24.90 -0.17 -2.54 16 14 C 0.18 3.25 3.70 -65.67 -0.24 3.01 16 15 H 0.07 1.36 8.13 -51.93 -0.42 0.94 16 16 N -0.74 -16.83 5.08 -51.24 -0.26 -17.09 16 17 C -0.25 -6.76 10.47 -15.06 -0.16 -6.92 16 18 H 0.09 2.66 8.06 -52.49 -0.42 2.24 16 19 C 0.01 0.24 5.50 -17.43 -0.10 0.15 16 20 N -0.93 -28.62 13.97 55.49 0.78 -27.85 16 21 Si 0.88 21.71 27.74 -169.99 -4.71 16.99 16 22 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 23 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 24 H -0.28 -6.38 6.52 56.52 0.37 -6.02 16 25 C 0.10 1.62 6.51 -2.41 -0.02 1.60 16 26 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 27 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 28 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.07 0.46 6.45 -51.93 -0.34 0.12 16 32 H 0.06 0.44 8.14 -51.92 -0.42 0.02 16 33 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.07 0.56 6.32 -51.93 -0.33 0.23 16 36 H 0.07 0.86 7.66 -51.93 -0.40 0.46 16 37 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.06 0.71 7.46 -51.93 -0.39 0.32 16 40 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 41 H 0.06 0.67 7.99 -51.93 -0.42 0.25 16 42 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 43 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 44 H 0.36 8.21 5.57 -40.82 -0.23 7.98 16 45 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 46 H 0.06 1.11 8.00 -51.93 -0.42 0.69 16 47 H 0.08 1.36 8.08 -51.93 -0.42 0.94 16 LS Contribution 368.85 15.07 5.56 5.56 Total: -1.00 -31.47 368.85 -8.68 -40.15 By element: Atomic # 1 Polarization: 13.67 SS G_CDS: -8.80 Total: 4.87 kcal Atomic # 6 Polarization: -2.42 SS G_CDS: -0.76 Total: -3.18 kcal Atomic # 7 Polarization: -54.48 SS G_CDS: -0.05 Total: -54.53 kcal Atomic # 8 Polarization: -9.95 SS G_CDS: 0.09 Total: -9.86 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -4.71 Total: 16.99 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -31.47 -8.68 -40.15 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181144939.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.394 kcal (2) G-P(sol) polarization free energy of solvation -31.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds