Wall clock time and date at job start Tue Mar 31 2020 05:19:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53003 * 109.47427 * 2 1 4 4 C 1.53002 * 109.47077 * 180.02562 * 3 2 1 5 5 C 1.53001 * 109.46690 * 179.97438 * 4 3 2 6 6 H 1.09001 * 109.47511 * 304.99864 * 5 4 3 7 7 C 1.53007 * 109.47068 * 65.00024 * 5 4 3 8 8 C 1.52998 * 109.47032 * 185.49622 * 7 5 4 9 9 C 1.50699 * 109.47002 * 184.99438 * 5 4 3 10 10 O 1.21282 * 120.00423 * 275.66466 * 9 5 4 11 11 N 1.34783 * 119.99566 * 95.66199 * 9 5 4 12 12 C 1.47022 * 125.65132 * 4.73201 * 11 9 5 13 13 C 1.54319 * 107.27051 * 181.01762 * 12 11 9 14 14 C 1.55147 * 102.94368 * 22.19681 * 13 12 11 15 15 H 1.09004 * 111.00830 * 82.60650 * 14 13 12 16 16 N 1.46496 * 111.00696 * 206.41983 * 14 13 12 17 17 C 1.36939 * 120.00130 * 273.54631 * 16 14 13 18 18 H 1.08001 * 120.00001 * 359.97438 * 17 16 14 19 19 C 1.38817 * 120.00012 * 179.97438 * 17 16 14 20 20 N 1.31620 * 119.99961 * 180.02562 * 19 17 16 21 21 Si 1.86795 * 120.00080 * 0.02562 * 19 17 16 22 22 H 1.48497 * 109.47414 * 89.99720 * 21 19 17 23 23 H 1.48504 * 109.47284 * 209.99777 * 21 19 17 24 24 H 1.48501 * 109.47284 * 329.99965 * 21 19 17 25 25 C 1.47425 * 125.64512 * 184.41942 * 11 9 5 26 26 H 1.09004 * 109.47305 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47299 * 300.00264 * 1 2 3 28 28 H 1.08999 * 109.47020 * 60.00264 * 1 2 3 29 29 H 1.09002 * 109.47299 * 239.99736 * 2 1 3 30 30 H 1.08999 * 109.47020 * 119.99736 * 2 1 3 31 31 H 1.08995 * 109.47320 * 59.99287 * 3 2 1 32 32 H 1.09008 * 109.46731 * 299.99647 * 3 2 1 33 33 H 1.08999 * 109.47119 * 299.99582 * 4 3 2 34 34 H 1.08998 * 109.47057 * 59.99764 * 4 3 2 35 35 H 1.09000 * 109.46721 * 305.49244 * 7 5 4 36 36 H 1.08993 * 109.47047 * 65.49502 * 7 5 4 37 37 H 1.09000 * 109.47055 * 54.52219 * 8 7 5 38 38 H 1.08999 * 109.47110 * 174.52608 * 8 7 5 39 39 H 1.09002 * 109.47062 * 294.52243 * 8 7 5 40 40 H 1.08996 * 109.87867 * 300.44248 * 12 11 9 41 41 H 1.09006 * 109.87868 * 61.59947 * 12 11 9 42 42 H 1.09004 * 110.71454 * 140.55483 * 13 12 11 43 43 H 1.08994 * 110.72363 * 263.82435 * 13 12 11 44 44 H 0.97001 * 120.00127 * 93.54163 * 16 14 13 45 45 H 0.96999 * 120.00001 * 180.02562 * 20 19 17 46 46 H 1.08997 * 110.36706 * 274.75028 * 25 11 9 47 47 H 1.09000 * 110.36948 * 37.07548 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 -0.0006 5 6 4.0800 2.8849 -0.0013 6 1 3.6451 3.4238 -0.8431 7 6 3.6758 3.5694 1.3061 8 6 4.0647 5.0480 1.2491 9 6 5.5819 2.8867 -0.1256 10 8 6.2724 2.7537 0.8625 11 7 6.1577 3.0359 -1.3351 12 6 5.4483 3.3031 -2.5948 13 6 6.5096 3.3694 -3.7131 14 6 7.6986 2.5749 -3.1113 15 1 7.5618 1.5023 -3.2495 16 7 8.9710 3.0174 -3.6871 17 6 9.4233 2.4640 -4.8551 18 1 8.8422 1.7010 -5.3517 19 6 10.6287 2.8837 -5.4009 20 7 11.0632 2.3521 -6.5239 21 14 11.6340 4.2029 -4.5417 22 1 12.5742 3.5647 -3.5856 23 1 12.4026 4.9753 -5.5507 24 1 10.7247 5.1175 -3.8056 25 6 7.6038 2.9648 -1.6128 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8932 -0.5138 0.8900 31 1 1.6766 1.9564 0.8899 32 1 1.6767 1.9563 -0.8901 33 1 3.9337 0.9285 0.8891 34 1 3.9329 0.9287 -0.8908 35 1 2.5980 3.4822 1.4436 36 1 4.1884 3.0907 2.1404 37 1 3.6300 5.5040 0.3596 38 1 3.6909 5.5565 2.1378 39 1 5.1504 5.1368 1.2093 40 1 4.7425 2.4984 -2.8006 41 1 4.9200 4.2543 -2.5282 42 1 6.1443 2.8883 -4.6205 43 1 6.7967 4.4019 -3.9117 44 1 9.4930 3.7025 -3.2409 45 1 11.9056 2.6451 -6.9051 46 1 8.0714 3.9341 -1.4403 47 1 8.0722 2.2009 -0.9921 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001181144939.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:45 Heat of formation + Delta-G solvation = -71.281114 kcal Electronic energy + Delta-G solvation = -22841.288972 eV Core-core repulsion = 19636.363876 eV Total energy + Delta-G solvation = -3204.925096 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.36753 -39.06080 -37.37281 -36.04632 -34.87582 -33.54549 -31.62382 -31.17465 -29.75882 -27.67439 -25.46370 -24.26043 -23.80895 -22.70107 -21.77598 -21.59876 -19.80188 -19.69656 -18.37148 -17.48286 -16.55334 -16.38942 -16.33053 -15.75925 -15.65722 -14.88191 -14.78927 -14.63131 -14.51460 -14.42898 -14.26674 -13.71859 -13.51292 -13.45458 -13.36356 -13.21607 -12.96737 -12.73956 -12.51537 -12.25531 -12.18838 -12.15009 -11.97917 -11.91066 -11.82933 -11.67710 -11.60168 -11.49634 -11.21454 -11.00584 -10.68713 -9.69326 -9.36567 -8.04135 -5.39136 1.37957 1.40580 1.47090 1.58804 1.93038 2.46805 3.24897 3.42813 3.50364 3.71018 3.78300 3.89108 3.98081 4.17461 4.18524 4.24369 4.26592 4.31544 4.38991 4.42384 4.49071 4.62372 4.66443 4.67703 4.79425 4.81402 4.89557 4.92095 4.95186 5.06484 5.08651 5.13286 5.18710 5.22348 5.23660 5.28974 5.36978 5.38592 5.40274 5.49220 5.55784 5.74727 6.19229 6.53293 7.03501 7.13270 7.77974 7.96610 9.16784 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.023350 B = 0.003490 C = 0.003194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1198.841484 B = 8021.311977 C = 8765.125225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.128 4.128 3 C -0.111 4.111 4 C -0.104 4.104 5 C -0.094 4.094 6 H 0.112 0.888 7 C -0.108 4.108 8 C -0.154 4.154 9 C 0.528 3.472 10 O -0.588 6.588 11 N -0.615 5.615 12 C 0.107 3.893 13 C -0.145 4.145 14 C 0.169 3.831 15 H 0.061 0.939 16 N -0.744 5.744 17 C -0.229 4.229 18 H 0.063 0.937 19 C -0.059 4.059 20 N -0.981 5.981 21 Si 0.950 3.050 22 H -0.282 1.282 23 H -0.295 1.295 24 H -0.252 1.252 25 C 0.104 3.896 26 H 0.053 0.947 27 H 0.057 0.943 28 H 0.058 0.942 29 H 0.058 0.942 30 H 0.056 0.944 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.055 0.945 34 H 0.062 0.938 35 H 0.101 0.899 36 H 0.053 0.947 37 H 0.068 0.932 38 H 0.067 0.933 39 H 0.025 0.975 40 H 0.091 0.909 41 H 0.091 0.909 42 H 0.081 0.919 43 H 0.070 0.930 44 H 0.366 0.634 45 H 0.258 0.742 46 H 0.063 0.937 47 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.802 2.333 14.336 27.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.166 4.166 3 C -0.148 4.148 4 C -0.142 4.142 5 C -0.115 4.115 6 H 0.130 0.870 7 C -0.145 4.145 8 C -0.211 4.211 9 C 0.319 3.681 10 O -0.468 6.468 11 N -0.349 5.349 12 C -0.015 4.015 13 C -0.186 4.186 14 C 0.059 3.941 15 H 0.079 0.921 16 N -0.387 5.387 17 C -0.360 4.360 18 H 0.081 0.919 19 C -0.251 4.251 20 N -0.631 5.631 21 Si 0.777 3.223 22 H -0.209 1.209 23 H -0.222 1.222 24 H -0.176 1.176 25 C -0.020 4.020 26 H 0.072 0.928 27 H 0.076 0.924 28 H 0.077 0.923 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.094 0.906 32 H 0.095 0.905 33 H 0.074 0.926 34 H 0.081 0.919 35 H 0.119 0.881 36 H 0.072 0.928 37 H 0.087 0.913 38 H 0.086 0.914 39 H 0.044 0.956 40 H 0.109 0.891 41 H 0.109 0.891 42 H 0.100 0.900 43 H 0.088 0.912 44 H 0.200 0.800 45 H 0.067 0.933 46 H 0.081 0.919 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -23.474 2.115 14.735 27.796 hybrid contribution 1.602 0.514 -0.004 1.683 sum -21.871 2.630 14.731 26.500 Atomic orbital electron populations 1.21761 0.95116 1.01804 1.02184 1.21543 0.96462 0.96804 1.01787 1.21628 0.92600 0.97219 1.03373 1.21479 0.97405 0.93129 1.02187 1.21466 0.88462 0.99686 1.01898 0.86956 1.21509 1.02581 0.95208 0.95214 1.21802 1.00060 0.96330 1.02899 1.21119 0.91898 0.74532 0.80586 1.90656 1.66406 1.52150 1.37626 1.48600 1.07470 1.70439 1.08349 1.22221 0.95087 1.02749 0.81432 1.23192 0.95716 1.01634 0.98036 1.21454 0.85615 0.97196 0.89818 0.92066 1.42576 1.22638 1.46977 1.26510 1.18975 1.02666 1.16058 0.98279 0.91860 1.25435 0.99235 1.02375 0.98035 1.69863 1.23098 1.47717 1.22397 0.85490 0.79111 0.79841 0.77811 1.20859 1.22186 1.17637 1.22278 0.82489 1.00936 0.96325 0.92794 0.92352 0.92299 0.92368 0.92550 0.90638 0.90515 0.92624 0.91890 0.88107 0.92843 0.91311 0.91360 0.95581 0.89074 0.89072 0.90008 0.91162 0.80045 0.93274 0.91922 0.91954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.53 9.91 71.98 0.71 -0.81 16 2 C -0.13 -1.55 5.93 30.59 0.18 -1.37 16 3 C -0.11 -1.27 4.98 30.60 0.15 -1.11 16 4 C -0.10 -1.72 4.67 30.60 0.14 -1.58 16 5 C -0.09 -1.73 1.91 -11.54 -0.02 -1.75 16 6 H 0.11 1.55 6.97 -2.39 -0.02 1.53 16 7 C -0.11 -1.85 5.05 30.60 0.15 -1.70 16 8 C -0.15 -2.71 9.64 71.98 0.69 -2.02 16 9 C 0.53 14.77 5.97 87.66 0.52 15.29 16 10 O -0.59 -21.50 16.32 -3.03 -0.05 -21.55 16 11 N -0.62 -16.95 3.33 -811.34 -2.70 -19.65 16 12 C 0.11 2.30 5.94 86.73 0.52 2.81 16 13 C -0.15 -4.19 6.64 31.78 0.21 -3.98 16 14 C 0.17 6.09 3.70 46.46 0.17 6.26 16 15 H 0.06 2.34 8.13 -2.38 -0.02 2.32 16 16 N -0.74 -33.60 5.08 -316.02 -1.61 -35.21 16 17 C -0.23 -12.62 10.47 84.03 0.88 -11.74 16 18 H 0.06 3.79 8.06 -2.91 -0.02 3.76 16 19 C -0.06 -3.41 5.50 84.86 0.47 -2.94 16 20 N -0.98 -61.88 13.97 21.65 0.30 -61.58 16 21 Si 0.95 45.01 27.74 68.60 1.90 46.92 16 22 H -0.28 -13.27 7.11 99.48 0.71 -12.56 16 23 H -0.30 -14.17 7.11 99.48 0.71 -13.46 16 24 H -0.25 -10.75 6.52 99.48 0.65 -10.11 16 25 C 0.10 3.44 6.51 86.93 0.57 4.01 16 26 H 0.05 0.53 8.14 -2.38 -0.02 0.51 16 27 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 28 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 29 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.08 0.75 6.45 -2.39 -0.02 0.73 16 32 H 0.08 0.72 8.14 -2.38 -0.02 0.70 16 33 H 0.05 1.09 8.14 -2.39 -0.02 1.08 16 34 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 35 H 0.10 1.16 6.32 -2.39 -0.02 1.15 16 36 H 0.05 1.17 7.66 -2.39 -0.02 1.15 16 37 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 38 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 39 H 0.02 0.61 7.46 -2.39 -0.02 0.59 16 40 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 41 H 0.09 1.52 7.99 -2.38 -0.02 1.50 16 42 H 0.08 2.33 8.14 -2.38 -0.02 2.31 16 43 H 0.07 2.12 8.14 -2.39 -0.02 2.11 16 44 H 0.37 16.10 5.57 -92.71 -0.52 15.58 16 45 H 0.26 15.58 8.31 -92.71 -0.77 14.80 16 46 H 0.06 2.10 8.00 -2.39 -0.02 2.08 16 47 H 0.06 2.23 8.08 -2.39 -0.02 2.21 16 Total: -1.00 -70.17 368.85 3.54 -66.63 By element: Atomic # 1 Polarization: 24.73 SS G_CDS: 0.34 Total: 25.07 kcal Atomic # 6 Polarization: -5.98 SS G_CDS: 5.35 Total: -0.63 kcal Atomic # 7 Polarization: -112.44 SS G_CDS: -4.00 Total: -116.44 kcal Atomic # 8 Polarization: -21.50 SS G_CDS: -0.05 Total: -21.55 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 1.90 Total: 46.92 kcal Total: -70.17 3.54 -66.63 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181144939.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.654 kcal (2) G-P(sol) polarization free energy of solvation -70.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.627 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds