Wall clock time and date at job start Tue Mar 31 2020 05:19:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47110 * 2 1 4 4 C 1.52992 * 109.47314 * 179.97438 * 3 2 1 5 5 C 1.52998 * 109.47447 * 176.60086 * 4 3 2 6 6 H 1.09003 * 109.46949 * 54.58498 * 5 4 3 7 7 C 1.52995 * 109.47101 * 294.59011 * 5 4 3 8 8 C 1.53006 * 109.47120 * 305.39946 * 7 5 4 9 9 C 1.50700 * 109.47336 * 174.58814 * 5 4 3 10 10 O 1.21276 * 120.00050 * 7.91415 * 9 5 4 11 11 N 1.34780 * 119.99866 * 187.91826 * 9 5 4 12 12 C 1.47014 * 125.64926 * 4.28164 * 11 9 5 13 13 C 1.54324 * 107.27087 * 181.02290 * 12 11 9 14 14 C 1.55156 * 102.94390 * 22.19412 * 13 12 11 15 15 H 1.09003 * 111.00528 * 82.60476 * 14 13 12 16 16 N 1.46492 * 111.00769 * 206.42453 * 14 13 12 17 17 C 1.36938 * 119.99812 * 273.54823 * 16 14 13 18 18 H 1.07996 * 120.00427 * 359.97438 * 17 16 14 19 19 C 1.38817 * 120.00029 * 180.02562 * 17 16 14 20 20 N 1.31619 * 120.00080 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00076 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.46976 * 59.99599 * 21 19 17 23 23 H 1.48504 * 109.47113 * 179.97438 * 21 19 17 24 24 H 1.48497 * 109.46913 * 299.99407 * 21 19 17 25 25 C 1.47423 * 125.64564 * 183.97675 * 11 9 5 26 26 H 1.09001 * 109.46923 * 60.00257 * 1 2 3 27 27 H 1.09002 * 109.47177 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.47537 * 300.00226 * 1 2 3 29 29 H 1.08996 * 109.47403 * 239.99864 * 2 1 3 30 30 H 1.09001 * 109.46923 * 119.99743 * 2 1 3 31 31 H 1.09001 * 109.47018 * 299.99685 * 3 2 1 32 32 H 1.09005 * 109.47105 * 59.99510 * 3 2 1 33 33 H 1.09000 * 109.47404 * 296.60458 * 4 3 2 34 34 H 1.09006 * 109.47263 * 56.60035 * 4 3 2 35 35 H 1.08997 * 109.47695 * 65.40175 * 7 5 4 36 36 H 1.09006 * 109.47169 * 185.40558 * 7 5 4 37 37 H 1.09001 * 109.47106 * 306.72845 * 8 7 5 38 38 H 1.08999 * 109.46785 * 66.72523 * 8 7 5 39 39 H 1.08999 * 109.47231 * 186.72910 * 8 7 5 40 40 H 1.09000 * 109.88718 * 300.44054 * 12 11 9 41 41 H 1.09002 * 109.88499 * 61.61082 * 12 11 9 42 42 H 1.09005 * 110.72191 * 140.55942 * 13 12 11 43 43 H 1.09004 * 110.72300 * 263.83196 * 13 12 11 44 44 H 0.97000 * 120.00163 * 93.54191 * 16 14 13 45 45 H 0.96999 * 120.00260 * 180.02562 * 20 19 17 46 46 H 1.09003 * 110.36576 * 274.74235 * 25 11 9 47 47 H 1.08998 * 110.36832 * 37.06541 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4426 0.0006 5 6 4.0799 2.8825 -0.0849 6 1 3.6392 3.4724 0.7188 7 6 3.6846 3.4842 -1.4348 8 6 4.1893 2.5820 -2.5628 9 6 5.5809 2.8926 0.0494 10 8 6.1963 1.8476 0.0544 11 7 6.2394 4.0630 0.1640 12 6 5.6160 5.3909 0.2614 13 6 6.7563 6.4270 0.3497 14 6 7.9607 5.6721 -0.2723 15 1 7.9382 5.7297 -1.3606 16 7 9.2290 6.1845 0.2518 17 6 9.8281 7.2643 -0.3401 18 1 9.3658 7.7379 -1.1935 19 6 11.0303 7.7496 0.1562 20 7 11.5941 7.1722 1.1960 21 14 11.8479 9.2222 -0.6516 22 1 10.9351 10.3918 -0.5880 23 1 13.1105 9.5407 0.0623 24 1 12.1477 8.9049 -2.0710 25 6 7.7039 4.2231 0.2186 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5139 0.8900 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 1.6767 1.9563 -0.8900 32 1 1.6765 1.9564 0.8900 33 1 3.9329 0.9825 0.9197 34 1 3.9337 0.8767 -0.8571 35 1 2.5992 3.5655 -1.4926 36 1 4.1290 4.4745 -1.5354 37 1 5.2571 2.4039 -2.4355 38 1 3.6564 1.6315 -2.5338 39 1 4.0139 3.0677 -3.5227 40 1 5.0095 5.5816 -0.6239 41 1 4.9962 5.4447 1.1565 42 1 6.5156 7.3160 -0.2334 43 1 6.9599 6.6890 1.3880 44 1 9.6445 5.7590 1.0181 45 1 12.4339 7.5115 1.5430 46 1 8.0613 4.0975 1.2407 47 1 8.1888 3.5067 -0.4445 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001181144940.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:49 Heat of formation + Delta-G solvation = -51.978260 kcal Electronic energy + Delta-G solvation = -22822.248629 eV Core-core repulsion = 19618.160567 eV Total energy + Delta-G solvation = -3204.088062 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.21748 -37.73103 -36.47925 -34.38729 -33.96555 -31.46657 -30.17884 -29.53930 -28.28957 -26.73627 -23.90768 -23.72530 -22.96253 -21.73051 -20.42223 -20.06695 -18.58672 -17.31628 -16.77063 -16.19850 -15.93843 -15.51451 -14.91800 -14.46366 -14.11972 -13.89538 -13.57034 -13.47638 -13.26466 -13.19032 -12.76132 -12.68142 -12.48315 -12.35750 -11.97092 -11.64187 -11.63766 -11.53459 -11.19710 -11.12122 -11.07311 -10.96010 -10.83357 -10.70603 -10.62854 -10.53415 -10.28051 -10.07783 -9.77502 -9.47199 -8.96739 -8.36697 -7.06122 -5.83341 -3.14069 2.82017 3.18236 3.40453 3.45257 3.46202 4.44934 4.51749 4.53674 4.68195 4.83369 4.88921 4.92307 5.05266 5.07545 5.19600 5.26610 5.31433 5.36903 5.47289 5.49102 5.55142 5.56158 5.59607 5.65667 5.69441 5.76651 5.79088 5.82567 5.89272 5.96443 6.01500 6.03848 6.13230 6.14603 6.18887 6.24980 6.34839 6.38642 6.56606 6.62033 6.90909 7.63473 7.78022 8.33696 8.37444 9.45481 9.99769 10.34668 11.38792 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.043726 B = 0.002920 C = 0.002874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 640.195911 B = 9586.642246 C = 9739.324929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.125 4.125 3 C -0.120 4.120 4 C -0.103 4.103 5 C -0.103 4.103 6 H 0.091 0.909 7 C -0.119 4.119 8 C -0.156 4.156 9 C 0.531 3.469 10 O -0.546 6.546 11 N -0.613 5.613 12 C 0.099 3.901 13 C -0.155 4.155 14 C 0.172 3.828 15 H 0.063 0.937 16 N -0.715 5.715 17 C -0.245 4.245 18 H 0.072 0.928 19 C -0.010 4.010 20 N -0.930 5.930 21 Si 0.910 3.090 22 H -0.285 1.285 23 H -0.291 1.291 24 H -0.285 1.285 25 C 0.099 3.901 26 H 0.053 0.947 27 H 0.051 0.949 28 H 0.053 0.947 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.065 0.935 32 H 0.060 0.940 33 H 0.066 0.934 34 H 0.075 0.925 35 H 0.073 0.927 36 H 0.072 0.928 37 H 0.057 0.943 38 H 0.059 0.941 39 H 0.054 0.946 40 H 0.066 0.934 41 H 0.060 0.940 42 H 0.074 0.926 43 H 0.075 0.925 44 H 0.386 0.614 45 H 0.257 0.743 46 H 0.067 0.933 47 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.803 -9.062 -3.234 23.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.163 4.163 3 C -0.158 4.158 4 C -0.141 4.141 5 C -0.124 4.124 6 H 0.109 0.891 7 C -0.156 4.156 8 C -0.213 4.213 9 C 0.320 3.680 10 O -0.424 6.424 11 N -0.347 5.347 12 C -0.025 4.025 13 C -0.197 4.197 14 C 0.060 3.940 15 H 0.080 0.920 16 N -0.356 5.356 17 C -0.376 4.376 18 H 0.089 0.911 19 C -0.207 4.207 20 N -0.578 5.578 21 Si 0.740 3.260 22 H -0.212 1.212 23 H -0.217 1.217 24 H -0.212 1.212 25 C -0.024 4.024 26 H 0.072 0.928 27 H 0.071 0.929 28 H 0.072 0.928 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.083 0.917 32 H 0.079 0.921 33 H 0.085 0.915 34 H 0.093 0.907 35 H 0.092 0.908 36 H 0.090 0.910 37 H 0.076 0.924 38 H 0.078 0.922 39 H 0.073 0.927 40 H 0.084 0.916 41 H 0.078 0.922 42 H 0.092 0.908 43 H 0.094 0.906 44 H 0.221 0.779 45 H 0.067 0.933 46 H 0.085 0.915 47 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -21.409 -9.544 -3.333 23.676 hybrid contribution 0.613 0.871 -0.006 1.065 sum -20.796 -8.674 -3.340 22.779 Atomic orbital electron populations 1.21778 0.96055 1.01438 1.01698 1.21523 0.95579 0.97040 1.02147 1.21676 0.95266 0.96776 1.02071 1.21475 0.94574 0.94469 1.03560 1.21339 0.92062 0.99308 0.99739 0.89111 1.21599 1.01429 0.99653 0.92918 1.21852 1.01890 0.99741 0.97803 1.20258 0.89607 0.82216 0.75964 1.90681 1.69621 1.31114 1.50986 1.48469 1.08056 1.06141 1.72010 1.22207 0.96928 0.82700 1.00632 1.23421 0.95814 0.97408 1.03025 1.21333 0.86827 0.89099 0.96692 0.91957 1.42255 1.20825 1.35688 1.36803 1.19156 1.02598 1.05351 1.10457 0.91050 1.24779 0.97894 0.99736 0.98271 1.69652 1.19729 1.42735 1.25666 0.86240 0.78740 0.82429 0.78576 1.21183 1.21652 1.21172 1.22551 0.79317 0.98879 1.01648 0.92832 0.92943 0.92833 0.92020 0.92039 0.91676 0.92122 0.91495 0.90663 0.90849 0.90967 0.92400 0.92226 0.92679 0.91553 0.92157 0.90764 0.90581 0.77938 0.93292 0.91454 0.90749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 9.91 37.16 0.37 -0.62 16 2 C -0.13 -0.95 5.93 -26.73 -0.16 -1.11 16 3 C -0.12 -0.96 5.05 -26.73 -0.14 -1.09 16 4 C -0.10 -1.07 3.66 -26.74 -0.10 -1.17 16 5 C -0.10 -1.13 1.90 -91.78 -0.17 -1.31 16 6 H 0.09 0.88 8.03 -51.93 -0.42 0.46 16 7 C -0.12 -1.12 5.26 -26.73 -0.14 -1.26 16 8 C -0.16 -1.60 9.10 37.16 0.34 -1.26 16 9 C 0.53 8.12 6.01 -10.98 -0.07 8.05 16 10 O -0.55 -10.32 16.29 5.56 0.09 -10.23 16 11 N -0.61 -9.43 3.32 -170.39 -0.57 -10.00 16 12 C 0.10 1.28 6.18 -3.07 -0.02 1.26 16 13 C -0.16 -2.50 6.64 -24.90 -0.17 -2.67 16 14 C 0.17 3.32 3.70 -65.67 -0.24 3.07 16 15 H 0.06 1.22 8.13 -51.93 -0.42 0.80 16 16 N -0.72 -17.40 5.28 -51.24 -0.27 -17.67 16 17 C -0.24 -6.58 9.98 -15.06 -0.15 -6.73 16 18 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 19 C -0.01 -0.29 5.50 -17.43 -0.10 -0.38 16 20 N -0.93 -27.62 13.06 55.49 0.72 -26.90 16 21 Si 0.91 21.92 29.55 -169.99 -5.02 16.89 16 22 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 23 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 24 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 25 C 0.10 1.78 6.51 -2.41 -0.02 1.77 16 26 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.06 0.48 6.55 -51.93 -0.34 0.14 16 32 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.07 0.79 8.06 -51.93 -0.42 0.37 16 34 H 0.07 0.86 6.18 -51.93 -0.32 0.53 16 35 H 0.07 0.55 6.77 -51.93 -0.35 0.20 16 36 H 0.07 0.70 5.38 -51.93 -0.28 0.42 16 37 H 0.06 0.75 7.20 -51.93 -0.37 0.37 16 38 H 0.06 0.56 6.63 -51.93 -0.34 0.22 16 39 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.07 0.74 5.72 -51.93 -0.30 0.44 16 41 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 43 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 44 H 0.39 10.06 7.71 -40.82 -0.31 9.75 16 45 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 46 H 0.07 1.27 8.00 -51.93 -0.42 0.85 16 47 H 0.07 1.41 8.08 -51.93 -0.42 0.99 16 LS Contribution 364.16 15.07 5.49 5.49 Total: -1.00 -30.57 364.16 -8.80 -39.37 By element: Atomic # 1 Polarization: 14.97 SS G_CDS: -8.49 Total: 6.49 kcal Atomic # 6 Polarization: -2.69 SS G_CDS: -0.76 Total: -3.44 kcal Atomic # 7 Polarization: -54.45 SS G_CDS: -0.11 Total: -54.57 kcal Atomic # 8 Polarization: -10.32 SS G_CDS: 0.09 Total: -10.23 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -30.57 -8.80 -39.37 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181144940.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.607 kcal (2) G-P(sol) polarization free energy of solvation -30.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds